Ureaplasma urealyticum
The Ureaplasma urealyticum circular genome of 0.760 Mb was sequenced in 1999 by
the University of Alabama at
Birmingham, Department of Microbiology. The key publication describing this
sequenced genome is "The complete sequence of the mucosal pathogen
Ureaplasma urealyticum" by J.I. Glass, E.J. Lefkowitz, J.S. Glass,
C.R. Heiner, E.Y. Chen and G.H. Cassell, Nature 407: 757-762, 2000.
Approximately 124 additional references pertaining to Ureaplasma species can be
extracted from the Molecular Subset of MEDLINE (U.urealyticum References).
The core information in this relational database is the table of annotated
records for each gene. UU001 through UU604 identify the gene records of
U.urealyticum. To these records analyses and links are appended, and
from these, tables and graphics are dynamically derived. For a general
perspective of the genome, go to the
Gene Image Map and browse blocks of
coordinates. Caution: The entire 751,719 base pair genome can be viewed at one
time, however this large file can cause some machines to freeze. For a text
discussion of the proteome and how it was annotated, go to the U.urealyticum
Properties file. Finally, browsing is facilitated by the
Functional Classes,
EC Table, and
Biochemical Pathways
summaries. For precise inquiries on the other
hand, start with the Search capabilities and their associated tables.
User Defined Database Searches
Basic Search
Intermediate Search
Advanced SQL Search
Sequence Search
Gene Image Map
Predefined Database Searches
Definition Search
Functional Classes Search
EC Table
Biochemical Pathways
PDB Table
Repeat Search
      
Repeat Table - Tandem
      
Repeat Table - All
Specialized Analysis
Base Composition
Analysis
BLAST Taxonomy Analysis
RNA Tables and Maps
Transfer RNA Table
Transfer RNA Map
Ribosomal RNA Table
L O S A L A M O S N A T I O N A L L A B O R A T O R Y
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the US Department of Energy
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