Treponema pallidum
Gene Image Map
The Treponema pallidum circular genome of 1.138 Mb was sequenced in 1998 by
teams at The Institute for Genomic Research (TIGR) and the University of Texas at
Houston, working under the aegis of the STD Branch, NIAID/NIH. The key
publication describing this newly sequenced genome is "Complete Genome Sequence
of Treponema pallidum, the Syphilis Spirochete" by C.M. Fraser, S.J. Norris,
G.M. Weinstock and colleagues, Science 281:375-388, 1998. Approximately 300
additional references pertaining to Treponema species can be extracted from
the Molecular Subset of MEDLINE (T.pallidum References).
The core information in this relational database is the table of annotated
records for each gene. TP0001 through TP1041 (with some minor exceptions) identify
the gene records for T.pallidum. To these records analyses and links are appended, and
from these, tables and graphics are dynamically derived. For a general
perspective of the genome, go to the
Gene Image Map and browse blocks of
coordinates. Caution: The entire 1,138,006 base pair genome can be viewed at one
time, however this large file can cause some machines to freeze. For a text
discussion of the proteome and how it was annotated, go to the T.pallidum Properties file. Finally, browsing is facilitated by the
Functional Classes,
EC table, and
Biochemical Pathways
summaries. For precise inquiries
on the other hand, the user should start with the Search capabilities and the tables
associated with those.
User Defined Database Searches
Gene Image Map
Basic Search
Intermediate Search
Advanced SQL Search
Sequence Search
Predefined Database Searches
Genomic Island Table
Definition Search
Functional Classes Search
EC Table
Biochemical Pathways
PDB Table
Repeat Search
      
Repeat Table - Tandem
      
Repeat Table - All
Specialized Analysis
Base Composition
Analysis
BLAST Taxonomy Analysis
RNA Tables and Maps
Transfer RNA Table
Transfer RNA Map
Ribosomal RNA Table
L O S A L A M O S N A T I O N A L L A B O R A T O R Y
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the US Department of Energy
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