Pseudorabies Virus

 PRV - VZV Proteome Comparison  

This graphical representation of Pseudorabies Virus and the Varicella-Zoster Virus was drawn by Bugspray, a genome comparison tool. The alignment is based on protein similarity using BLAST2 with a cutoff for a best hit of p = 0.0001. In this case, Bugspray connected the start of a protein from the PRV genome on the top with the respective start of the best hit from the VZV genome on the bottom. A green line represents a pair of genes found on strands of the same sense and red lines connect pairs of genes from strands of the opposite sense. There are 60 pairs of genes in this alignment and most of them are clearly from the same sense strand and show almost complete conservation of gene order.The genes on the opposite sense strand are inverted but they show complete synteny. They are listed below along with the E value of the best BLAST hit.

Gene ID Start Stop Gene ID Start Stop E value
PRV00338152730VZV005414127831e-39
PRV00448333895VZV006527442523e-29
PRV00576638373VZV008860793862e-25
PRV00676764788VZV007857753261e-91
PRV00792579533VZV01010678109051e-91
PRV00893338527VZV0091066794774e-18
PRV009959110340VZV01111009119175e-17
PRV0101040411645VZV01212160133922e-72
PRV0111174613998VZV01313590160499e-27
PRV0121401716098VZV01416214181997e-81
PRV0131959516854VZV03357008596140.0
PRV0142164019466VZV03254651569632e-76
PRV0152531521788VZV03150857544710.0
PRV0162560628752VZV03050636470520.0
PRV0172948828673VZV02946127471282e-78
PRV0183089231239VZV02744618441489e-16
PRV0193089329481VZV02844506462632e-81
PRV0203139832186VZV02644021432124e-60
PRV0213224132552VZV02543138424312e-15
PRV0224231433060VZV02434083423741e-142
PRV0234511142352VZV02330759338751e-100
PRV0244516846274VZV02230475423744e-58
PRV0254647048977VZV02128845265180.0
PRV0264898749898VZV02026493255731e-108
PRV0275149850401VZV01924149255162e-48
PRV0285162852782VZV018023794225685e-15
PRV0305402955468VZV01621113194311e-31
PRV0325727355699VZV03562138603211e-55
PRV0335891157307VZV036663910621713e-97
PRV0345951260474VZV03864807658328e-56
PRV0355951959004VZV03764753639778e-36
PRV0366061062670VZV03966074685991e-30
PRV0376606564488VZV04070293686688e-52
PRV0396674470736VZV04271540757300.0
PRV0407089671783VZV04375847767973e-71
PRV0417316674959VZV04578170802001e-65
PRV0427498675972VZV04680360814511e-30
PRV0437706477543VZV04782719833182e-20
PRV0457751378709VZV04883168847002e-38
PRV0467867580126VZV04984667863223e-75
PRV0488193484465VZV05287881903881e-170
PRV0498193580754VZV05187882865757e-38
PRV0508305384465VZV05287881903883e-86
PRV0518446286513VZV05390493928081e-54
PRV0528747986679VZV05493850928559e-35
PRV0538930091804VZV05695996986410.0
PRV0548930187370VZV05595984936751e-151
PRV0559186392300VZV05798568993025e-11
PRV0579386093147VZV059100272996075e-21
PRV0589486693916VZV0601012191003022e-68
PRV0599531494844VZV0611016491011704e-06
PRV0639771396481VZV0621044851030827e-15
PRV065107511103171VZV0721207641246961e-117
PRV066115995117089VZV0711193161184801e-25
PRV067118170119336VZV0671130371142184e-52
PRV068118332119336VZV0671130371142184e-52
PRV071122298123398VZV0681144961155607e-10
PRV072123502125235VZV0691158081176791e-26
PRV075128607127513VZV0711193161184801e-25
PRV076137091141431VZV0721207641246961e-117

LOS ALAMOS NATIONAL LABORATORY
Operated by the University of California for the National Nuclear Security Administration,
of the US Department of Energy.     Copyright © 2001 UC | Disclaimer/Privacy

Monica Misra
Last modified: Thu Aug 7 16:54:24 MDT 2003