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UTR Table for Pseudorabies Virus


Gene Name 5' Start 5' Stop 3' Start 3' Stop
ORF1 1616 1635 2260 2287
UL54 3816 3841 2705 2729
UL53 4834 4859 2705 3894
UL52 7677 7690 2705 4787
UL51 7522 7662 8374 8458
UL50 9334 9427 8423 8526
UL49.5 best TATA 9204 9256 9554 10361
UL49.5 2nd TATA 9046 9256 9554 10361
UL49 9579 9590 10341 10361
UL48 10366 10403 11646 16176
UL47 11727 11745 13999 16176
UL46 13994 14016 16099 16176
UL27 19596 19691 16808 16853
UL28 21641 21713 16808 19465
UL29 25316 25488 21714 21787
UL30 25544 25605 28753 28793
UL31 29489 29584 28599 28672
UL32 30894 31212 28599 29480
UL33 none none 31240 32590
UL34 31275 31397 32187 32590
UL35 32213 32240 32553 32590
UL36 none none 33036 33061
subUL37 45031 45087 42331 42351
UL37 45112 45221 42331 42351
UL38 45140 45167 46275 46350
subUL39 46569 46604 48978 49984
UL39 46356 46469 48978 49984
UL40 48900 48986 49899 49984
UL41 51499 51541 50380 50400
UL42 best TATA 51596 51627 52783 52800
UL42 2nd TATA 51556 51627 52783 52800
UL43 52829 52841 53964 53988
UL44 54016 54028 55469 55525
UL26 57274 57304 55634 55698
UL26.5 56536 56545 55634 55698
UL25 58912 58927 55634 57306
UL24 59520 59633 55634 59003
UL23 none none 60475 60610
UL22 60590 60609 62671 62677
UL21 66066 66097 64477 64487
UL20 66151 66171 66658 66678
UL19 major transcript 66683 66743 70737 70858
UL19 minor transcript 66683 66743 70737 71866
UL18 70867 70895 71784 71866
UL17 73092 73165 74960 75982
UL16 74734 74985 75973 75982
UL15 77066 77173 71872 71978
UL14 76996 77063 77544 80300
UL13 77304 77512 78710 80300
UL12 78351 78674 80127 80300
UL11 none none 80276 80300
UL10 81936 82189 80733 80753
UL9 81907 81933 84466 86541
UL8.5 none none 84466 86541
UL8 84350 84461 86514 86541
UL7 87480 87537 86507 86678
UL6 none none 86507 87369
UL5 89257 89299 91805 92419
subUL4 91925 91970 92301 92419
UL4 91789 91862 92301 92419
UL3.5 93151 93332 92455 92475
UL3 93861 94047 92455 92475
UL2 94867 94908 92455 93915
UL1 95315 95330 92455 94843
subEP0 97585 97707 none none
EP0 none none 96247 96480
IE180 complement 107512 107773 102696 103170
US1 first third 115241 115395 117091 117215
US1 second third 115517 115569 117091 117215
US1 last third 115725 115994 117091 117215
US3 major transcript 118268 118331 119337 120976
US3 minor transcript 118108 118169 119337 120976
US4 119363 119395 120893 120976
US6 121054 121074 122278 123418
US7 122285 122297 123399 123418
US8 123484 123501 125236 125722
US9 125261 125268 125590 125722
US2 125726 125810 126582 126653
US1 complement first third 129207 129361 127387 127511
US1 complement second third 129033 129085 127387 127511
US1 complement last third 128608 128877 127387 127511
IE180 136829 137090 141432 141906

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