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UTR Table for Pseudorabies Virus
Gene Name | 5' Start | 5' Stop | 3' Start | 3' Stop |
ORF1 | 1616 | 1635 | 2260 | 2287 |
UL54 | 3816 | 3841 | 2705 | 2729 |
UL53 | 4834 | 4859 | 2705 | 3894 |
UL52 | 7677 | 7690 | 2705 | 4787 |
UL51 | 7522 | 7662 | 8374 | 8458 |
UL50 | 9334 | 9427 | 8423 | 8526 |
UL49.5 best TATA | 9204 | 9256 | 9554 | 10361 |
UL49.5 2nd TATA | 9046 | 9256 | 9554 | 10361 |
UL49 | 9579 | 9590 | 10341 | 10361 |
UL48 | 10366 | 10403 | 11646 | 16176 |
UL47 | 11727 | 11745 | 13999 | 16176 |
UL46 | 13994 | 14016 | 16099 | 16176 |
UL27 | 19596 | 19691 | 16808 | 16853 |
UL28 | 21641 | 21713 | 16808 | 19465 |
UL29 | 25316 | 25488 | 21714 | 21787 |
UL30 | 25544 | 25605 | 28753 | 28793 |
UL31 | 29489 | 29584 | 28599 | 28672 |
UL32 | 30894 | 31212 | 28599 | 29480 |
UL33 | none | none | 31240 | 32590 |
UL34 | 31275 | 31397 | 32187 | 32590 |
UL35 | 32213 | 32240 | 32553 | 32590 |
UL36 | none | none | 33036 | 33061 |
subUL37 | 45031 | 45087 | 42331 | 42351 |
UL37 | 45112 | 45221 | 42331 | 42351 |
UL38 | 45140 | 45167 | 46275 | 46350 |
subUL39 | 46569 | 46604 | 48978 | 49984 |
UL39 | 46356 | 46469 | 48978 | 49984 |
UL40 | 48900 | 48986 | 49899 | 49984 |
UL41 | 51499 | 51541 | 50380 | 50400 |
UL42 best TATA | 51596 | 51627 | 52783 | 52800 |
UL42 2nd TATA | 51556 | 51627 | 52783 | 52800 |
UL43 | 52829 | 52841 | 53964 | 53988 |
UL44 | 54016 | 54028 | 55469 | 55525 |
UL26 | 57274 | 57304 | 55634 | 55698 |
UL26.5 | 56536 | 56545 | 55634 | 55698 |
UL25 | 58912 | 58927 | 55634 | 57306 |
UL24 | 59520 | 59633 | 55634 | 59003 |
UL23 | none | none | 60475 | 60610 |
UL22 | 60590 | 60609 | 62671 | 62677 |
UL21 | 66066 | 66097 | 64477 | 64487 |
UL20 | 66151 | 66171 | 66658 | 66678 |
UL19 major transcript | 66683 | 66743 | 70737 | 70858 |
UL19 minor transcript | 66683 | 66743 | 70737 | 71866 |
UL18 | 70867 | 70895 | 71784 | 71866 |
UL17 | 73092 | 73165 | 74960 | 75982 |
UL16 | 74734 | 74985 | 75973 | 75982 |
UL15 | 77066 | 77173 | 71872 | 71978 |
UL14 | 76996 | 77063 | 77544 | 80300 |
UL13 | 77304 | 77512 | 78710 | 80300 |
UL12 | 78351 | 78674 | 80127 | 80300 |
UL11 | none | none | 80276 | 80300 |
UL10 | 81936 | 82189 | 80733 | 80753 |
UL9 | 81907 | 81933 | 84466 | 86541 |
UL8.5 | none | none | 84466 | 86541 |
UL8 | 84350 | 84461 | 86514 | 86541 |
UL7 | 87480 | 87537 | 86507 | 86678 |
UL6 | none | none | 86507 | 87369 |
UL5 | 89257 | 89299 | 91805 | 92419 |
subUL4 | 91925 | 91970 | 92301 | 92419 |
UL4 | 91789 | 91862 | 92301 | 92419 |
UL3.5 | 93151 | 93332 | 92455 | 92475 |
UL3 | 93861 | 94047 | 92455 | 92475 |
UL2 | 94867 | 94908 | 92455 | 93915 |
UL1 | 95315 | 95330 | 92455 | 94843 |
subEP0 | 97585 | 97707 | none | none |
EP0 | none | none | 96247 | 96480 |
IE180 complement | 107512 | 107773 | 102696 | 103170 |
US1 first third | 115241 | 115395 | 117091 | 117215 |
US1 second third | 115517 | 115569 | 117091 | 117215 |
US1 last third | 115725 | 115994 | 117091 | 117215 |
US3 major transcript | 118268 | 118331 | 119337 | 120976 |
US3 minor transcript | 118108 | 118169 | 119337 | 120976 |
US4 | 119363 | 119395 | 120893 | 120976 |
US6 | 121054 | 121074 | 122278 | 123418 |
US7 | 122285 | 122297 | 123399 | 123418 |
US8 | 123484 | 123501 | 125236 | 125722 |
US9 | 125261 | 125268 | 125590 | 125722 |
US2 | 125726 | 125810 | 126582 | 126653 |
US1 complement first third | 129207 | 129361 | 127387 | 127511 |
US1 complement second third | 129033 | 129085 | 127387 | 127511 |
US1 complement last third | 128608 | 128877 | 127387 | 127511 |
IE180 | 136829 | 137090 | 141432 | 141906 |
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