Bugspray Comparison

Human Cytomegalovirus

This graphical representation of Human Cytomegalovirus and the Chimpanzee Cytomegalovirus was drawn by Bugspray, a genome comparison tool. The alignment is based on protein similarity using BLAST2 with a cutoff for a best hit of p = 0.0001. In this case, Bugspray connected the start of a protein from the HCMV genome on the top with the respective start of the best hit from the CCMV genome on the bottom. A green line represents a pair of genes found on strands of the same sense and red lines connect pairs of genes from strands of the opposite sense. There are 136 pairs of genes in this alignment and most of them are clearly from the same sense strand and show almost complete conservation of gene order. They are listed below along with the E value of the best BLAST hit.

Gene ID	Start	Stop	Gene ID	Start	Stop	E value
HCMV001	970	1905	CCMV001	714	1628	4e-51
HCMV0010	8182	8697	CCMV002	6664	7191	1e-25
HCMV0011	8726	9430	CCMV003	7202	7900	7e-44
HCMV0012	9434	10684	CCMV004	7939	9021	2e-28
HCMV0014	11143	11703	CCMV005	9123	10124	9e-27
HCMV0016	13047	12865	CCMV006	10432	10256	4e-16
HCMV0019	14013	14513	CCMV008	11469	11924	2e-06
HCMV0020	14612	15466	CCMV009	12130	12981	1e-40
HCMV0021	15526	16194	CCMV0010	13052	13693	5e-25
HCMV0022	16234	16602	CCMV0011	13799	14305	3e-13
HCMV0023	16612	17298	CCMV0014	15758	16468	2e-08
HCMV0024	17426	18202	CCMV0013	14959	15657	1e-18
HCMV0025	18295	19122	CCMV0014	15758	16468	6e-15
HCMV0026	19320	20741	CCMV0015	16623	18392	2e-50
HCMV0028	20891	21874	CCMV0016	18719	19780	1e-121
HCMV0029	22416	23108	CCMV0018	20188	20880	2e-62
HCMV0031	23216	23530	CCMV0019	21011	21316	4e-10
HCMV0032	23639	24745	CCMV020	21423	22532	1e-99
HCMV0033	24742	25038	CCMV021	22529	22837	3e-35
HCMV034	25301	26323	CCMV022	22980	24020	8e-57
HCMV037	28719	27865	CCMV025	26439	25564	1e-108
HCMV038	29837	28935	CCMV026	27518	26616	1e-147
HCMV039	30059	32029	CCMV027	27787	29835	1e-178
HCMV040	32777	32211	CCMV028	30695	30123	8e-83
HCMV041	34659	32833	CCMV029	32676	30754	0.0
HCMV042	35895	34756	CCMV030	33879	32817	1e-168
HCMV043	37007	35925	CCMV031	35132	34074	1e-163
HCMV044	37502	37137	CCMV032	35579	35220	2e-18
HCMV045	37981	39768	CCMV033	36007	37698	0.0
HCMV046	42995	39849	CCMV034	40798	37754	1e-150
HCMV047	43066	44425	CCMV035	40885	42299	1e-154
HCMV048	44793	46016	CCMV036	42681	43778	1e-129
HCMV049	46095	48017	CCMV037	43857	45815	0.0
HCMV050	49778	48245	CCMV038	47603	46071	0.0
HCMV051	52125	51130	CCMV039	49967	48924	1e-118
HCMV052	52708	49912	CCMV040	50491	47771	2e-79
HCMV054	53880	53215	CCMV041	51606	51007	2e-45
HCMV056	54760	54383	CCMV043	52488	52048	9e-28
HCMV057	56095	54824	CCMV044	53796	52531	4e-47
HCMV058	57443	56142	CCMV045	55122	53845	0.0
HCMV059	60304	57584	CCMV046	58171	55334	0.0
HCMV060	61319	60447	CCMV048	59185	58307	1e-146
HCMV061	61318	64269	CCMV047	59184	62132	0.0
HCMV062	64266	70991	CCMV049	62129	68956	0.0
HCMV063	73043	71331	CCMV051	70959	69265	0.0
HCMV064	74193	73000	CCMV052	72148	70907	1e-96
HCMV065	74688	74215	CCMV053	72660	72178	3e-44
HCMV066	74727	76733	CCMV054	72724	74646	0.0
HCMV067	76726	77856	CCMV055	74639	75835	1e-136
HCMV068	81562	77834	CCMV056	79886	75813	0.0
HCMV069	84423	81703	CCMV057	82783	80018	0.0
HCMV070	86938	84386	CCMV058	85265	82746	0.0
HCMV071	91212	87505	CCMV059	89146	85475	0.0
HCMV083	101364	99130	CCMV060	101154	98395	1e-171
HCMV084	104320	105405	CCMV062	104250	105371	1e-110
HCMV085	104304	101464	CCMV061	104234	101280	0.0
HCMV086	106652	105486	CCMV063	106724	105564	1e-157
HCMV087	106668	107084	CCMV064	106752	107168	9e-25
HCMV088	108456	107056	CCMV065	108534	107149	1e-100
HCMV089	111063	108832	CCMV066	111281	108978	0.0
HCMV090	111258	112235	CCMV067	111462	112424	6e-78
HCMV091	111838	113766	CCMV068	112078	113994	0.0
HCMV092	113855	115150	CCMV069	114146	115408	1e-134
HCMV093	116092	115205	CCMV070	116367	115480	1e-131
HCMV094	116129	118255	CCMV071	116400	118532	1e-107
HCMV095	117134	118255	CCMV071	116400	118532	3e-50
HCMV097	120096	118417	CCMV073	120456	118780	0.0
HCMV098	121968	120283	CCMV074	122340	120673	0.0
HCMV099	124000	122240	CCMV075	124393	122672	1e-170
HCMV100	124952	124032	CCMV076	125339	124425	1e-146
HCMV101	129226	125114	CCMV077	129675	125515	0.0
HCMV102	129286	132111	CCMV078	129706	132726	0.0
HCMV103	132108	133397	CCMV079	132723	134267	7e-79
HCMV104	134766	135101	CCMV080	135679	136110	3e-34
HCMV106	135071	135676	CCMV081	136080	136688	1e-111
HCMV107	135642	137426	CCMV082	136654	138474	0.0
HCMV108	137284	138321	CCMV083	138332	139372	1e-154
HCMV109	139319	140914	CCMV084	140375	141913	0.0
HCMV110	139320	133394	CCMV085	140376	134264	0.0
HCMV111	140911	141294	CCMV086	141910	142305	5e-41
HCMV112	141415	143538	CCMV087	142371	144683	0.0
HCMV113	143632	145386	CCMV088	144859	146550	0.0
HCMV114	145323	145895	CCMV089	146487	147170	1e-15
HCMV115	147275	146157	CCMV090	148571	147480	1e-171
HCMV117	147453	150074	CCMV091	148816	151524	0.0
HCMV118	150988	150239	CCMV092	152472	151729	4e-98
HCMV119	152857	155727	CCMV093	154266	157145	0.0
HCMV120	153029	150936	CCMV094	154435	152420	0.0
HCMV130	161520	163731	CCMV095	162822	165230	6e-95
HCMV131	164653	163901	CCMV096	166258	165506	1e-132
HCMV132	165461	164625	CCMV097	167054	166230	2e-90
HCMV133	166405	165461	CCMV098	168040	167054	5e-25
HCMV134	167676	166402	CCMV099	169353	168037	1e-145
HCMV137	169574	168969	CCMV101	171344	170742	6e-52
HCMV138	170167	169625	CCMV102	171931	171395	2e-41
HCMV140	173696	171937	CCMV104	175490	173873	1e-168
HCMV141	173729	174187	CCMV105	175724	176185	4e-15
HCMV145	176553	175796	CCMV106	178262	177809	2e-23
HCMV147	177237	176593	CCMV107	179307	178579	2e-76
HCMV149	178674	177862	CCMV109	180717	179905	4e-45
HCMV152	180964	179714	CCMV004	7939	9021	2e-28
HCMV153	181672	180968	CCMV003	7202	7900	7e-44
HCMV154	182216	181701	CCMV002	6664	7191	1e-25
HCMV163	189428	188493	CCMV001	714	1628	4e-51
HCMV165	190696	193236	CCMV165	240404	237846	1e-120
HCMV166	193730	193260	CCMV134	204541	203984	2e-51
HCMV167	194646	194047	CCMV135	205494	204883	4e-77
HCMV168	195621	195061	CCMV136	206426	205863	1e-44
HCMV171	196882	196331	CCMV137	207633	207055	3e-31
HCMV172	197982	197305	CCMV138	208883	208185	4e-43
HCMV173	198867	198184	CCMV139	209685	209038	3e-55
HCMV174	199625	198882	CCMV140	210469	209696	1e-78
HCMV175	200568	200011	CCMV141	211459	210797	2e-36
HCMV176	201291	200644	CCMV142	212144	211467	2e-49
HCMV177	202322	201477	CCMV143	213235	212315	4e-87
HCMV178	203187	202402	CCMV144	214092	213304	1e-111
HCMV179	204188	203256	CCMV145	215059	214199	2e-98
HCMV180	205021	204233	CCMV146	215870	215097	3e-77
HCMV181	206010	205081	CCMV147	216888	215938	4e-54
HCMV182	207036	206155	CCMV148	217876	217013	3e-94
HCMV183	208128	207304	CCMV149	218979	218098	8e-97
HCMV184	208988	208266	CCMV150	219926	219108	2e-40
HCMV185	209799	209035	CCMV151	220758	219994	1e-111
HCMV186	210625	209906	CCMV152	221598	220912	1e-104
HCMV187	212532	210802	CCMV153	223610	221781	0.0
HCMV188	214424	212646	CCMV154	225538	223742	0.0
HCMV189	216025	214520	CCMV155	227188	225644	0.0
HCMV191	218470	216659	CCMV156	229540	227792	0.0
HCMV192	218836	219924	CCMV157	229954	231021	1e-106
HCMV193	220132	221196	CCMV158	231222	232277	1e-122
HCMV194	221359	222747	CCMV159	232436	233776	1e-117
HCMV195	222551	223600	CCMV160	233577	234674	4e-63
HCMV196	223715	224200	CCMV161	234781	235242	1e-54
HCMV197	224318	224869	CCMV162	235376	235957	2e-49
HCMV198	225413	225904	CCMV163	236551	237060	5e-29
HCMV202	229411	227045	CCMV165	240404	237846	1e-120