Inventory of Haemophilus
ducreyi ABC transporters
|
NBD protein |
MSD protein |
SBP protein |
|
|
|||||||
|
NBD1 |
NBD2 |
MSD1 |
TM |
EAA |
MSD2 |
TM |
EAA |
SBP1 |
SBP2 |
Domain |
Function |
|
A. Importers |
|
|
|
|
|
|
|
|
|
|
|
|
HD231 |
|
HD230 |
12 |
-2 |
HD230 |
12 |
-2 |
HD601 |
|
8 |
Thiamine |
|
HD315 |
HD316 |
HD313 |
7 |
-1 |
HD312 |
6 |
0 |
|
|
1 |
dipeptides |
|
HD1235 |
HD863 |
HD1232 |
6 |
-2 |
HD1231 |
8 |
-2 |
HD1230 |
|
1 |
oligopeptides? |
|
|
|
HD1736 |
6 |
|
|
|
|
HD1735 |
|
|
oligopeptides? |
|
HD572 |
|
HD573 |
8 |
0 |
HD574 |
6 |
0 |
HD1074 |
|
2 |
spermidine/putrescine |
|
|
|
|
|
|
|
|
|
HD994 |
|
|
spermidine/putrescine |
|
HD786 |
|
HD787 |
6 |
-2 |
HD789 |
6 |
-2 |
HD790 |
|
2 |
heme |
|
|
|
|
|
|
|
|
|
HD215 |
|
|
heme |
|
HD2032 |
|
HD2033 |
5 |
-1 |
|
|
|
HD2035 |
|
3 |
glutamine? |
|
HD811 |
|
HD813 |
5 |
|
HD814 |
6 |
|
HD812 |
|
2 |
arginine |
|
HD586 |
|
|
|
|
|
|
|
HD587? |
|
|
iron |
|
HD1817 |
|
HD1814 |
6 |
|
|
|
|
HD1816 |
|
|
iron (chelated) |
|
|
|
HD1024 |
8 |
-2 |
HD1025 |
7 |
-2 |
|
|
|
|
|
HD1820 |
HD1826 |
HD1824 |
7 |
0 |
HD1821 |
8 |
0 |
HD1823 |
|
1 |
molybdate |
|
|
|
|
|
|
|
|
|
HD198 |
|
|
Zine |
|
HD982 |
|
HD981 |
4 |
|
|
|
|
|
|
3 |
??? |
|
HD1338 |
|
HD1297 |
6 |
-2 |
|
|
|
HD1339 |
|
3 |
??? |
|
HD1630 |
|
HD1630 |
5 |
-2 |
|
|
|
HD1629? |
|
5 |
??? |
|
HD1671 |
HD1672 |
HD1671 |
6 |
-2 |
HD1670 |
8 |
|
HD1669 |
|
10 |
??? |
|
HD1098 |
|
HD1099 |
5 |
|
|
|
|
HD1100 |
|
3 |
??? |
|
HD259 |
|
HD258? |
6 |
|
|
|
|
HD256 |
HD257? |
3 |
??? |
|
HD1768 |
HD1768 |
|
|
|
|
|
|
|
|
|
??? |
|
HD1756 |
|
HD1756 |
11 |
|
HD1756 |
11 |
|
|
|
8 |
??? |
|
HD224 |
HD224 |
|
|
|
|
|
|
|
|
|
??? |
|
HD1745 |
HD1745 |
HD1744 |
2 |
-2 |
|
|
|
|
|
9 |
??? |
|
HD860 |
|
HD861 |
4 |
|
HD858 |
4 |
|
|
|
2 |
??? |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
B. Exporters |
|
|
|
|
|
|
|
|
|
|
|
|
HD1019 |
|
HD1019 |
4 |
-1 |
|
|
|
|
|
5 |
drug efflux? |
|
HD1651 |
HD1652 |
HD1651 |
5 |
-2 |
HD1652 |
6 |
|
|
|
6 |
Cyd homologues |
Table: The ABC transporters are split into importers and
exporters. For each ABC transporter, the nucleotide-binding domains (NBD1 and NBD2),
the membrane-spanning domains (MSD1 and MSD2), and the solute-binding proteins
(SBP1 and SBP2) are reported. The functions were assigned based on the
similarity searches against Genbank.
TM: Transmembrane segments predicted with the PHD htm
program
EAA motifs predicted with the Pattern Search.