.
A variety of genomic analyses in various stages of completion are presented below. For example, while the proteome comparison section contains information on Chlamydia and Mycoplasma, a similar comparison of the Treponema pallidum genome awaits the completion of the Treponema denticola genome. We will be expanding this section as analyses are deepened and new analyses are performed.
In the proteome comparisons section, Blastp analysis of Chlamydia trachomatis and Chlamydia pneumoniae is presented under Chlamydia proteome comparison. Similar comparisons are included for Mycoplasma genitalium and Mycoplasma pneumoniae and are presented in Mycoplasma proteome comparison. The comparisons for Haemophilus ducreyi and Haemophilus influenzae are presented in Haemophilus proteome comparison. The comparisons for Haemophilus ducreyi and E.coli are presented in Haemophilus ducreyi vs E.coli proteome comparison. The comparison of the
proteomes of Neisseria gonorrhoeae, Neisseria
meningitidis Z2491, and Neisseria meningitidis MC58
are presented in Neisseria proteome comparison .
The section on chlamydial major outer membrane proteins attempts a comparative analysis of the available chlamydial MOMP sequences, using three nucleotide and amino acid alignments. One alignment represents the variation within species, one alignment represents variation between species and one alignment contains all Chlamydiaceae MOMP sequences.
Summaries of sets of ABC transporters found in sexually transmitted, completely sequenced bacteria are presented in the ABC transporters 
analysis subsection. Operon organization and ABC component domains become the bases of these analyses.
Summaries of sets of two-component system found in sexually transmitted, completely sequenced bacteria are presented in the two-component system analysis subsection.
Summaries of aromatic amino acid biosynthesis pathway in Chlamydia species are presented in the aromatic amino acid biosynthesis pathway analysis subsection.