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Repeat Table for Neisseria gonorrhoeae

Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
1  4.20 13411,13456 11 NG0015   Neisseria-specific protein, uncharacterized 
2  2.10 18283,18307 12 NG0021   iron receptor; TonB-dependent receptor protein 
3  1.90 21170,21209 20 NG0024   hypothetical protein 
4  1.90 30496,30535 20 NG0034   fructose-1,6-bisphosphate aldolase 
5  4.10 48332,49471 281 NG0049.1 , NG0049.2 , IGR0040, IGR0040.1, IGR0040.2  hypothetical protein
hypothetical protein 
6  3.40 56098,57057 280 IGR0044   
7  13.80 69754,69822 5 IGR0053   
8  9.80 75510,75558 5 NG0070   outer membrane opacity protein B (opaB) 
9  3.80 76175,76224 13 IGR0056   
10  1.90 138380,138408 15 NG0127   tRNA processing exoribonuclease BN 
11  2.70 139721,139761 15 NG0129   possible aluminum resistance protein (YbaX) 
12  3.10 171739,171775 12 NG0168   periplasmic binding protein MntC, possible ABC solute binding protein 
13  3.00 194581,195057 159 NG0192 , NG0195 , IGR0157  spermidine/putrescine ABC transporter, ATP-binding protein
spermidine/putrescine ABC transporter, permease protein 
14  4.60 210383,210414 7 NG0207   glycosyl transferase 
15  1.90 307027,307057 16 IGR0258   
16  12.40 317722,317808 7 IGR0265   
17  21.40 358510,358616 5 NG0366   hypothetical protein 
18  2.80 399762,399794 12 NG0406   DNA restriction and modification endonuclease 
19  2.30 435789,435813 11 NG0441   ribose-phosphate pyrophosphokinase (phosphoribosyl pyrophosphate synthetase) 
20  2.30 460736,460763 12 IGR0393   
21  20.60 461420,461666 12 NG0473 , IGR0394  conserved hypothetical protein 
22  40.80 461422,461666 6 NG0473   conserved hypothetical protein 
23  5.40 466312,466429 22 NG0484   hypothetical protein 
24  2.50 466293,466454 66 NG0484   hypothetical protein 
25  2.10 466463,466487 12 NG0484   hypothetical protein 
26  6.80 479586,479649 9 NG0499   hypothetical protein 
27  2.50 479594,479668 30 NG0499   hypothetical protein 
28  12.80 518019,518082 5 NG0545   site-specific DNA-methyltransferase; type III restriction-modification system methyltransferase, subunit mod 
29  2.20 545396,545454 27 NG0564   dihydrolipoamide S-acetyltransferase complex (E2 component of pyruvate dehydrogenase complex) 
30  2.90 554533,554575 15 NG0571   conserved hypothetical protein (possible membrane protein) 
31  37.20 631784,631932 4 NG0641   type III restriction/modification system modification methylase 
32  2.70 639364,639404 15 NG0650   ATP-dependent RNA helicase 
33  2.20 644536,644575 18 NG0655   exonuclease VII large subunit 
34  2.30 723525,723554 13 IGR0606   
35  2.10 805795,805832 18 IGR0673   
36  2.20 838721,838754 16 NG0851   cell-division protein FtsK 
37  2.10 863422,863446 12 IGR731.1   
38  16.80 924955,925038 5 IGR0785   
39  2.00 925883,925939 28 IGR0785   
40  12.40 952929,953114 15 NG0983   Neisseria-specific protein, probable proline-rich repeat protein 
41  5.20 952957,953113 30 NG0983   Neisseria-specific protein, probable proline-rich repeat protein 
42  2.90 983404,983455 18 NG1020   conserved hypothetical protein 
43  20.80 1000484,1000587 5 IGR0848   
44  2.20 1004801,1004827 12 IGR0852   
45  2.00 1032133,1032158 13 NG1074   conserved hypothetical protein 
46  2.00 1036104,1036160 28 NG1077   hypothetical protein 
47  2.00 1040014,1040039 13 IGR0879   
48  2.00 1040159,1040218 30 IGR0879   
49  2.40 1053995,1054023 12 NG1092   possible DNA methylase fragment 
50  2.10 1055263,1055309 22 NG1093   hypothetical protein 
51  2.10 1068399,1068423 12 NG1111   conserved hypothetical protein 
52  5.20 1068457,1068571 22 NG1111   conserved hypothetical protein 
53  3.50 1068432,1068659 66 NG1111   conserved hypothetical protein 
54  2.20 1068589,1068637 22 NG1111   conserved hypothetical protein 
55  40.80 1073421,1073665 6 NG1122   hypothetical protein 
56  2.30 1074324,1074351 12 NG1124   Neisseria-specific protein, uncharacterized 
57  2.00 1133958,1134130 87 NG1190   outer membrane protein precursor GNA2001 
58  2.00 1188140,1188180 20 IGR1003   
59  2.80 1198677,1198955 101 IGR1012   
60  11.80 1231522,1231580 5 IGR1041   
61  2.10 1356255,1356291 18 NG1393   Neisseria-specific protein MafA2 adhesin 
62  2.50 1396489,1396518 12 NG1433   ABC transporter, nitrate or taurine permease protein, possible MSD protein in ABC transport system 
63  2.00 1402374,1402409 18 NG1438   thiol:disulfide interchange protein DsbC 
64  20.80 1412273,1412355 4 IGR1180   
65  3.40 1425435,1426397 281 NG1458 , NG1459 , NG1460 , IGR1190, IGR1191, IGR1192  hypothetical protein
hypothetical protein
hypothetical protein 
66  2.00 1427527,1427623 48 NG1464 , IGR1194  outer membrane opacity protein; PII protein 
67  10.80 1428375,1428428 5 NG1464   outer membrane opacity protein; PII protein 
68  2.10 1465707,1465881 84 IGR1226   
69  2.10 1465426,1466202 365 NG1498 , NG1498.1 , IGR1225, IGR1226  hypothetical protein
conserved hypothetical protein 
70  12.80 1481471,1481534 5 NG1513   outer membrane opacity protein 
71  3.30 1482700,1482807 33 IGR1238   
72  1.90 1544090,1544128 20 NG1570   hypothetical protein (possible maltosephosphorylase) 
73  2.00 1544828,1544956 64 IGR1282.3   
74  2.30 1589057,1589084 12 NG1622   hypothetical protein 
75  1.90 1594092,1594126 18 IGR1330   
76  5.30 1595538,1595617 15 NG1634   conserved hypothetical protein - putative phage origin 
77  2.80 1595538,1595621 30 NG1634   conserved hypothetical protein - putative phage origin 
78  7.40 1595614,1595776 22 NG1634 , NG1635   conserved hypothetical protein - putative phage origin
hypothetical protein 
79  2.50 1595614,1595776 66 NG1634 , NG1635   conserved hypothetical protein - putative phage origin
hypothetical protein 
80  2.10 1595790,1595814 12 NG1635   hypothetical protein 
81  3.90 1712733,1712794 16 IGR1427   
82  2.20 1727027,1727052 12 IGR1438.1   
83  2.10 1729204,1729245 20 IGR1439   
84  15.60 1789800,1789908 7 IGR1484   
85  13.80 1830967,1831035 5 IGR1530   
86  2.00 1842980,1843435 228 NG1871 , NG1872 , NG1873 , IGR1537, IGR1538  polypeptide deformylase
hypothetical protein
conserved hypothetical protein 
87  2.00 1921078,1921107 15 NG1947   hypothetical protein 
88  2.10 1921168,1921199 15 NG1947   hypothetical protein 
89  2.30 1921216,1921283 30 NG1947   hypothetical protein 
90  1.90 1953815,1953839 13 NG1977   conserved hypothetical protein 
91  2.10 1958799,1958836 18 NG1984   Neisseria-specific protein, uncharacterized 
92  2.20 2013930,2013962 15 NG2042 , IGR1685  pilin silent gene cassette 
93  10.80 2037122,2037175 5 IGR1702   
94  2.20 2037598,2037630 15 IGR1702   
95  2.10 2039334,2039363 14 IGR1702.1   
96  2.00 2041192,2041237 23 IGR1703   
97  3.70 2058360,2058411 15 NG2078   ABC transporter, permease protein, MSD protein in ABC transport system 
98  2.80 2085602,2085635 12 NG2105   Cell envelope; Surface polysaccharides, lipopolysaccharides and antigensadhesin penetration protein; IgA-specific serine endopeptidase 
99  2.20 2091677,2091718 19 IGR1739   



Copy #is the number of repeat units
Location is given in genome coordinates
Length is the size of the consensus repeat unit in nucleotides
Gene & Intergenic Id(s) are the ids of the gene and intergenic space records in which the repeat is located
Definitions-Comments are the definition lines from the genes and the comments from the intergenic space records in the previous columns


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