Basic Search | Intermediate Search | Advanced SQL Search | Gene Image Map| Home

Repeat Table for Neisseria gonorrhoeae

Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
100  2.00 1081281,1085264
1103992,1107975
3983 NG1138 , NG1139 , NG1140 , NG1141 , IGR0918, IGR0919, IGR0920, NG1165 , NG1166 , NG1167 , IGR0940.2, IGR0941, IGR0942, IGR0943  conserved hypothetical protein (possible phage-related protein)
Neisseria-specific protein (possible integral membrane protein)
TspB-related protein
Neisseria-specific protein, uncharacterized
conserved hypothetical protein
Neisseria-specific protein, uncharacterized
TspB related protein 
101  2.00 1260093,1263840
1651674,1655421
3747 NG1306 , IGR1063, IGR1385.1  hypothetical protein 
102  2.00 1649321,1652633
1872473,1875785
3312 NG1698 , IGR1385.1, NG1903 , NG1902 , IGR1561  competence protein, DNA-binding
competence protein, DNA-binding
Neisseria-specific protein, uncharacterized 
103  2.00 1083418,1086119
1219078,1221779
2701 NG1139 , NG1140 , NG1141 , NG1142 , NG1143 , IGR0920, IGR0921, IGR0922, IGR0923, NG1264 , NG1265 , NG1266 , NG1267 , NG1268 , IGR1030, IGR1031, IGR1032  Neisseria-specific protein (possible integral membrane protein)
TspB-related protein
Neisseria-specific protein, uncharacterized
Neisseria-specific protein, uncharacterized
Neisseria-specific protein (possible membrane protein)
Neisseria-specific protein, uncharacterized
TspB related protein
Neisseria-specific protein, uncharacterized
Neisseria-specific protein, uncharacterized
Neisseria-specific protein (possible integral membrane protein) 
104  2.00 1257348,1259950
1872082,1874684
2602 NG1305 , IGR1062.1, IGR1063, NG1903 , NG1902 , IGR1560.1, IGR1561  competence protein, DNA-binding
competence protein, DNA-binding
Neisseria-specific protein, uncharacterized 
105  2.00 1261431,1263842
1876164,1878575
2411 NG1306 , IGR1063, IGR1561  hypothetical protein 
106  2.00 1108457,1110867
1221396,1223806
2410 NG1168 , NG1169 , NG1170 , NG1171 , NG1172 , NG1167.1 , IGR0943.1, IGR0944, IGR0945, IGR0946, IGR0947, NG1267 , NG1268 , NG1269 , NG1270 , NG1271 , NG1272 , IGR1032, IGR1033, IGR1034, IGR1035, IGR1036  Neisseria-specific protein, possible membrane protein
Neisseria-specific protein, uncharacterized
Neisseria-specific protein, uncharacterized
phage replication protein
hypothetical protein
Neisseria-specific protein, uncharacterized
Neisseria-specific protein, uncharacterized
Neisseria-specific protein (possible integral membrane protein)
Neisseria-specific protein, uncharacterized
Neisseria-specific protein, uncharacterized
probable phage protein
hypothetical protein 
107  2.00 1653012,1655421
1876164,1878573
2409 IGR1385.1, IGR1561   
108  2.00 1257739,1259950
1649321,1651532
2211 NG1305 , IGR1063, NG1698 , IGR1385.1  competence protein, DNA-binding
competence protein, DNA-binding 
109  4.00 1119629,1121561
1261721,1263653
1653302,1655234
1876454,1878386
1932 NG1179 , IGR0950, NG1306 , IGR1063, IGR1385.1, IGR1561  Neisseria-specific protein, uncharacterized
hypothetical protein 
110  2.00 1117636,1119560
1651314,1653238
1924 IGR0950, IGR1385.1   
111  2.00 1106129,1107975
1219078,1220924
1846 NG1166 , NG1167 , IGR0942, IGR0943, NG1264 , NG1265 , NG1266 , IGR1030  Neisseria-specific protein, uncharacterized
TspB related protein
Neisseria-specific protein, uncharacterized
TspB related protein
Neisseria-specific protein, uncharacterized 
112  2.00 1217602,1219332
1601019,1602749
1730 NG1263 , NG1264 , NG1265 , IGR1028, IGR1029, IGR1030, NG1642 , NG1643 , NG1644 , IGR1339, IGR1340  conserved hypothetical protein
Neisseria-specific protein, uncharacterized
TspB related protein
hypothetical protein
conserved hypothetical protein (possibly phage associated)
TspB protein 
113  2.00 1117996,1119560
1260093,1261657
1564 IGR0950, IGR1063   
114  2.00 1117636,1118955
1874466,1875785
1319 IGR0950, IGR1561   
115  2.00 52520,53785
1887248,1888513
1265 NG0055 , IGR0043, NG1912 , IGR1569  pilus-associated protein
pilus associated protein 
116  2.00 491768,492910
1606987,1608129
1142 NG0518 , NG0519 , NG0520 , IGR0430, IGR0431, NG1649 , NG1650 , IGR1345, IGR1346  hypothetical protein
Neisseria-specific protein, uncharacterized
hypothetical protein
conserved hypothetical protein
Neisseria-specific protein, uncharacterized 
117  2.00 863594,864701
888361,889468
1107 NG0881 , NG0882 , IGR0732, IGR731.1, NG0909 , NG0910 , IGR0755, IGR0756  probable OrfB transposase
conserved hypothetical protein
IS150 transposase orfB protein
conserved hypothetical protein 
118  2.00 1807697,1808792
1827216,1828311
1095 NG1842 , IGR1511, NG1858 , IGR1526  translation elongation factor TU
translation elongation factor Tu 
119  2.00 38018,39079
252020,253081
1061 NG0041 , IGR0032, IGR0033, NG0252 , NG0253 , IGR0211, IGR0212  transposase fragment, undefined
Neisseria-specific protein, possible lipoprotein
transposase fragment, undefined 
120  3.00 38021,39079
252023,253081
745949,747007
1058 NG0041 , IGR0032, IGR0033, NG0252 , NG0253 , IGR0211, IGR0212, NG0749 , IGR0625, IGR0625.1  transposase fragment, undefined
Neisseria-specific protein, possible lipoprotein
transposase fragment, undefined
putative IS1016 transposase 
121  3.00 1115565,1116577
1257668,1258680
1872402,1873414
1012 NG1178 , IGR0950, NG1305 , IGR1063, NG1903 , NG1902 , IGR1561  competence protein, DNA-binding
competence protein, DNA-binding
competence protein, DNA-binding
Neisseria-specific protein, uncharacterized 
122  2.00 1103678,1104651
1216628,1217601
973 NG1164 , IGR0940.2, NG1262 , IGR1028  pilin gene inverting protein
pilin gene inverting protein homolog PivNG 
123  2.00 1260093,1261052
1874826,1875785
959 IGR1063, IGR1561   
124  2.00 1115636,1116577
1649321,1650262
941 NG1178 , IGR0950, NG1698 , IGR1385.1  competence protein, DNA-binding
competence protein, DNA-binding 
125  4.00 1082581,1083419
1105292,1106130
1218242,1219080
1601659,1602497
838 NG1138 , NG1139 , IGR0919, NG1165 , NG1166 , IGR0941, NG1263 , NG1264 , IGR1029, NG1643 , NG1644 , IGR1340  conserved hypothetical protein (possible phage-related protein)
Neisseria-specific protein (possible integral membrane protein)
conserved hypothetical protein
Neisseria-specific protein, uncharacterized
conserved hypothetical protein
Neisseria-specific protein, uncharacterized
conserved hypothetical protein (possibly phage associated)
TspB protein 
126  2.00 767994,768825
1659302,1660133
831 NG0773 , IGR0645, NG1703 , IGR1389  pilin gene inverting protein homolog PivNG
pilin gene inverting protein homolog PivNG 
127  4.00 1083753,1084581
1106464,1107292
1219413,1220241
1602834,1603662
828 NG1140 , NG1167 , NG1265 , NG1644   TspB-related protein
TspB related protein
TspB related protein
TspB protein 
128  2.00 74739,75558
2036351,2037170
819 NG0070 , IGR0055, IGR1702  outer membrane opacity protein B (opaB) 
129  2.00 925014,925823
1531358,1532167
809 IGR0785, IGR1269.1   
130  2.00 458182,458988
1586504,1587310
806 NG0465 , NG0466 , NG0467 , IGR0389, IGR0390, NG1616 , NG1617 , NG1618 , IGR1318, IGR1319  hypothetical protein
hypothetical protein
conserved hypothetical protein (possible phage origin)
hypothetical protein
hypothetical protein
conserved hypothetical protein - putative phage origin 
131  2.00 459913,460681
1588235,1589003
768 NG0469 , NG0470 , NG0471 , IGR0392, NG1620 , NG1621 , NG1622 , IGR1321  hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein 
132  2.00 1284893,1285627
1418781,1419515
734 NG1326 , IGR1081, NG1453 , IGR1186.1  transposase fragment, undefined
transposase fragment, undefined 
133  2.00 617535,618239
2064355,2065059
704 NG0628 , IGR0525, IGR0526, NG2087 , NG2086 , IGR1720  IS1016 transposase
IS1016 transposase
conserved hypothetical protein (possible adhesin) 
134  2.00 976311,976994
1285139,1285822
683 NG1006 , NG1007 , IGR0830, NG1326 , NG1327 , IGR1081  Neisseria-specific protein, possible transposase
conserved hypothetical protein
transposase fragment, undefined
Neisseria-specific protein, uncharacterized 
135  2.00 1081281,1081940
1216942,1217601
659 IGR0918, IGR1028   
136  4.00 1081941,1082580
1104652,1105291
1217602,1218241
1601019,1601658
639 NG1138 , IGR0918, NG1165 , IGR0940.2, NG1263 , IGR1028, NG1642 , NG1643 , IGR1339  conserved hypothetical protein (possible phage-related protein)
conserved hypothetical protein
conserved hypothetical protein
hypothetical protein
conserved hypothetical protein (possibly phage associated) 
137  2.00 459273,459884
1587595,1588206
611 NG0467 , NG0468 , NG0469 , IGR0391, NG1618 , NG1619 , NG1620 , IGR1320  conserved hypothetical protein (possible phage origin)
hypothetical protein
hypothetical protein
conserved hypothetical protein - putative phage origin
hypothetical protein
hypothetical protein 



Copy #is the number of repeat units
Location is given in genome coordinates
Length is the size of the consensus repeat unit in nucleotides
Gene & Intergenic Id(s) are the ids of the gene and intergenic space records in which the repeat is located
Definitions-Comments are the definition lines from the genes and the comments from the intergenic space records in the previous columns


LOS ALAMOS NATIONAL LABORATORY
Operated by the University of California for the National Nuclear Security Administration,
of the US Department of Energy.     Copyright © 2002 UC | Disclaimer/Privacy