Basic Search | Intermediate Search | Advanced SQL Search | Gene Image Map| Home

Repeat Table for Mycoplasma genitalium

Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
49  2.00 283521,283540
283521,283540
20 MG239 , MG239   ATP-dependent protease La-1 (Lon)
ATP-dependent protease La-1 (Lon) 
50  2.00 315266,315287
315266,315287
22 IGR190, IGR190   
51  2.00 74745,74764
425674,425693
20 MG064 , MG338   conserved hypothetical protein; possible MSD element in the ABC transport system
lipoprotein, putative 
52  2.00 235650,235670
571592,571612
21 MG196 , MG468   translation initiation factor IF3
conserved hypothetical protein (possible 5'-3' exonuclease) 
53  15.00 169476,169501
169479,169504
169482,169507
169485,169510
169488,169513
169491,169516
169494,169519
169497,169522
227131,227156
227134,227159
227137,227162
351453,351478
351456,351481
429309,429334
430015,430040
26 IGR98, IGR98, IGR98, IGR98, IGR98, IGR98, IGR98, IGR98, MG192 , MG192 , MG192 , IGR213, IGR213, IGR253, IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both.
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
54  5.00 169500,169524
227140,227164
351459,351483
429312,429336
430016,430040
25 IGR98, MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
55  6.00 169503,169524
224535,224556
227143,227164
351462,351483
429315,429336
430019,430040
22 IGR98, MG191 , MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
56  7.00 258368,258387
258425,258444
273015,273034
344025,344044
403192,403211
448788,448807
448789,448808
20 MG217 , MG217 , MG226 , IGR208, IGR239, IGR263, IGR263  Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein)
Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein)
amino acid permease of the ABC transport system
MG350.1 was added sometime after the initial annotation by TIGR. The date on the genbank record for MG350.1 is Nov. 5,1998. This call seems consistant with gene sequences predicted in M. pneumoniae.
MG350.1 was added sometime after the initial annotation by TIGR. The date on the genbank record for MG350.1 is Nov. 5,1998. This call seems consistant with gene sequences predicted in M. pneumoniae. 
57  2.00 83756,83777
498599,498620
22 MG068 , MG395   Mycoplasma-specific conserved hypothetical protein
Mycoplasma-specific conserved hypothetical protein 
58  4.00 123469,123489
182164,182184
351817,351837
467386,467406
21 MG096 , MG142 , MG288 , MG369   conserved hypothetical protein
translation initiation factor 2
conserved hypothetical protein
conserved hypothetical protein 
59  2.00 4285,4306
4285,4306
22 MG003 , MG003   DNA gyrase subunit B (DNA topoisomerase IV subunit B)
DNA gyrase subunit B (DNA topoisomerase IV subunit B) 
60  5.00 169475,169498
227130,227153
351452,351475
429308,429331
430015,430038
24 IGR98, MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
61  2.00 224534,224556
430016,430038
23 MG191 , IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1 
62  6.00 169475,169495
224534,224554
227130,227150
351452,351472
429308,429328
430015,430035
21 IGR98, MG191 , MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
63  10.00 82463,82482
141342,141361
165668,165687
217866,217885
373384,373403
385849,385868
417193,417212
479223,479242
498455,498474
576617,576636
20 MG067 , MG113 , MG114 , MG139 , MG187 , MG303 , MG309 , MG334 , MG380 , MG395 , MG468.1   Mycoplasma-specific conserved hypothetical protein
asparaginyl-tRNA synthetase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (phosphatidylglycerophosphate synthase)
conserved hypothetical protein (possible Zn-dependent hydrolase)
ABC transporter ATP-binding protein
ABC transporter; predicted NBD protein
Mycoplasma-specific protein; possible solute binding protein in ABC transport system
valyl-tRNA synthetase
glucose inhibited division protein B
Mycoplasma-specific conserved hypothetical protein
ABC transporter, ATP binding protein 
64  2.00 427794,427817
427794,427817
24 MG339 , MG339   RecA protein
RecA protein 
65  2.00 5991,6010
65910,65929
20 MG004 , MG057   DNA gyrase subunit A (topoisomerase IV subunit A)
conserved hypothetical protein 
66  2.00 78862,78881
576554,576573
20 MG065 , MG468.1   ABC transporter, ATP-binding protein
ABC transporter, ATP binding protein 



Copy #is the number of repeat units
Location is given in genome coordinates
Length is the size of the consensus repeat unit in nucleotides
Gene & Intergenic Id(s) are the ids of the gene and intergenic space records in which the repeat is located
Definitions-Comments are the definition lines from the genes and the comments from the intergenic space records in the previous columns


LOS ALAMOS NATIONAL LABORATORY
Operated by the University of California for the National Nuclear Security Administration,
of the US Department of Energy.     Copyright © 2002 UC | Disclaimer/Privacy