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Repeat Table for Mycoplasma genitalium

Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
1  tandem 2.30 72455,72479 11 MG062   fructose-permease II ABC component 
2  tandem 16.70 169475,169524 3 IGR98   
3  tandem 1.90 195240,195308 36 MG159   50S ribosomal protein L29 
4  tandem 11.70 227130,227164 3 MG192   Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
5  tandem 2.40 258124,258210 36 MG217   Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein) 
6  tandem 5.70 258160,258493 59 MG217   Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein) 
7  tandem 2.30 262800,262832 15 MG218   adhesin accessory 
8  tandem 2.00 328933,328958 13 MG271   dihydrolipoamide dehydrogenase component E3 
9  tandem 10.70 351452,351483 3 IGR213  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
10  tandem 5.70 384455,384488 6 MG309   Mycoplasma-specific protein; possible solute binding protein in ABC transport system 
11  tandem 1.90 390613,390812 105 MG312   cytadherence high molecular weight protein (cytadherence-accessory protein) 
12  tandem 2.90 390758,390932 60 MG312   cytadherence high molecular weight protein (cytadherence-accessory protein) 
13  tandem 2.10 397570,397794 108 MG318   cytadhesin P32 
14  tandem 11.30 425824,425857 3 MG338   lipoprotein, putative 
15  tandem 9.70 429308,429336 3 IGR253   
16  tandem 16.70 429967,430016 3 IGR253   
17  tandem 10.70 430015,430046 3 IGR253   
18  tandem 3.20 483237,483265 9 MG384   probable OBG-related Spo0B-associated GTP-binding protein 
19  tandem 3.10 485718,485782 21 MG386   protein P200, cytadherence accessory protein 
20  tandem 3.00 532007,532035 10 MG425   probable ATP-dependent RNA helicase 
21  direct 2.00 230454,230641
350277,350464
188 IGR139, IGR213  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
22  direct 2.00 167754,167878
214097,214221
125 IGR98, IGR134   
23  direct 2.00 226957,227087
351279,351409
131 MG192 , IGR213  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
24  direct 2.00 258166,258266
258286,258386
101 MG217 , MG217   Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein)
Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein) 
25  direct 2.00 226780,226893
428958,429071
114 MG192 , IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
26  direct 3.00 167684,167811
223941,224068
273409,273536
128 IGR98, MG191 , IGR166  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1 
27  direct 2.00 389256,389488
390168,390400
233 MG312 , MG312   cytadherence high molecular weight protein (cytadherence-accessory protein)
cytadherence high molecular weight protein (cytadherence-accessory protein) 
28  direct 2.00 485509,485614
485968,486073
106 MG386 , MG386   protein P200, cytadherence accessory protein
protein P200, cytadherence accessory protein 
29  direct 2.00 168519,168667
350490,350638
149 IGR98, IGR213  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
30  direct 2.00 86926,87035
350490,350599
110 IGR49, IGR213  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
31  direct 2.00 214802,214920
226111,226229
119 IGR134, MG192   Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
32  direct 2.00 86677,86783
168261,168367
107 IGR49, IGR98   
33  direct 2.00 215261,215362
350895,350996
102 IGR134, IGR213  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
34  direct 2.00 229813,229928
349623,349738
116 IGR139, IGR213  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
35  direct 2.00 226975,227158
429153,429336
184 MG192 , IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
36  direct 2.00 351297,351409
429153,429265
113 IGR213, IGR253  tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
37  direct 2.00 224061,224176
430173,430288
116 MG191 , IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1 
38  direct 2.00 227226,227331
351545,351650
106 MG192 , IGR213  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
39  direct 2.00 168773,168889
226425,226541
117 IGR98, MG192   Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
40  direct 2.00 169593,169726
429405,429538
134 IGR98, IGR253   
41  direct 2.00 169490,169609
227130,227249
120 IGR98, MG192   Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
42  direct 2.00 223902,224075
273370,273543
174 MG191 , IGR166  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1 
43  direct 2.00 169394,169509
227049,227164
116 IGR98, MG192   Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon) 
44  direct 2.00 169394,169503
429227,429336
110 IGR98, IGR253   
45  direct 2.00 389734,389845
390646,390757
112 MG312 , MG312   cytadherence high molecular weight protein (cytadherence-accessory protein)
cytadherence high molecular weight protein (cytadherence-accessory protein) 
46  direct 2.00 86885,87035
168478,168628
151 IGR49, IGR98   
47  direct 2.00 168196,168302
214568,214674
107 IGR98, IGR134   
48  direct 2.00 389490,389732
390402,390644
243 MG312 , MG312   cytadherence high molecular weight protein (cytadherence-accessory protein)
cytadherence high molecular weight protein (cytadherence-accessory protein) 
49  inverted 2.00 283521,283540
283521,283540
20 MG239 , MG239   ATP-dependent protease La-1 (Lon)
ATP-dependent protease La-1 (Lon) 
50  inverted 2.00 315266,315287
315266,315287
22 IGR190, IGR190   
51  inverted 2.00 74745,74764
425674,425693
20 MG064 , MG338   conserved hypothetical protein; possible MSD element in the ABC transport system
lipoprotein, putative 
52  inverted 2.00 235650,235670
571592,571612
21 MG196 , MG468   translation initiation factor IF3
conserved hypothetical protein (possible 5'-3' exonuclease) 
53  inverted 15.00 169476,169501
169479,169504
169482,169507
169485,169510
169488,169513
169491,169516
169494,169519
169497,169522
227131,227156
227134,227159
227137,227162
351453,351478
351456,351481
429309,429334
430015,430040
26 IGR98, IGR98, IGR98, IGR98, IGR98, IGR98, IGR98, IGR98, MG192 , MG192 , MG192 , IGR213, IGR213, IGR253, IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both.
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
54  inverted 5.00 169500,169524
227140,227164
351459,351483
429312,429336
430016,430040
25 IGR98, MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
55  inverted 6.00 169503,169524
224535,224556
227143,227164
351462,351483
429315,429336
430019,430040
22 IGR98, MG191 , MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
56  inverted 7.00 258368,258387
258425,258444
273015,273034
344025,344044
403192,403211
448788,448807
448789,448808
20 MG217 , MG217 , MG226 , IGR208, IGR239, IGR263, IGR263  Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein)
Mycoplasma-specific conserved hypothetical protein (possible proline-rich P65 protein)
amino acid permease of the ABC transport system
MG350.1 was added sometime after the initial annotation by TIGR. The date on the genbank record for MG350.1 is Nov. 5,1998. This call seems consistant with gene sequences predicted in M. pneumoniae.
MG350.1 was added sometime after the initial annotation by TIGR. The date on the genbank record for MG350.1 is Nov. 5,1998. This call seems consistant with gene sequences predicted in M. pneumoniae. 
57  inverted 2.00 83756,83777
498599,498620
22 MG068 , MG395   Mycoplasma-specific conserved hypothetical protein
Mycoplasma-specific conserved hypothetical protein 
58  inverted 4.00 123469,123489
182164,182184
351817,351837
467386,467406
21 MG096 , MG142 , MG288 , MG369   conserved hypothetical protein
translation initiation factor 2
conserved hypothetical protein
conserved hypothetical protein 
59  inverted 2.00 4285,4306
4285,4306
22 MG003 , MG003   DNA gyrase subunit B (DNA topoisomerase IV subunit B)
DNA gyrase subunit B (DNA topoisomerase IV subunit B) 
60  inverted 5.00 169475,169498
227130,227153
351452,351475
429308,429331
430015,430038
24 IGR98, MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
61  inverted 2.00 224534,224556
430016,430038
23 MG191 , IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1 
62  inverted 6.00 169475,169495
224534,224554
227130,227150
351452,351472
429308,429328
430015,430035
21 IGR98, MG191 , MG192 , IGR213, IGR253, IGR253  Mycoplasma-specific attachment protein, MgPa operon, adhesin P1
Mycoplasma-specific conserved hypothetical protein (114 kDa protein, MgPa operon)
tRNA-Trp-2 overlaps with MG287 (possible acyl carrier protein). The length of the overlap is 7 nucleotides and the region of overlap is on the C-terminus of MG287 and on the 5' end on tRNA-Trp-2. This indicates the possibility of a promoter located within MG287 or that one transcript encodes both. 
63  inverted 10.00 82463,82482
141342,141361
165668,165687
217866,217885
373384,373403
385849,385868
417193,417212
479223,479242
498455,498474
576617,576636
20 MG067 , MG113 , MG114 , MG139 , MG187 , MG303 , MG309 , MG334 , MG380 , MG395 , MG468.1   Mycoplasma-specific conserved hypothetical protein
asparaginyl-tRNA synthetase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (phosphatidylglycerophosphate synthase)
conserved hypothetical protein (possible Zn-dependent hydrolase)
ABC transporter ATP-binding protein
ABC transporter; predicted NBD protein
Mycoplasma-specific protein; possible solute binding protein in ABC transport system
valyl-tRNA synthetase
glucose inhibited division protein B
Mycoplasma-specific conserved hypothetical protein
ABC transporter, ATP binding protein 
64  inverted 2.00 427794,427817
427794,427817
24 MG339 , MG339   RecA protein
RecA protein 
65  inverted 2.00 5991,6010
65910,65929
20 MG004 , MG057   DNA gyrase subunit A (topoisomerase IV subunit A)
conserved hypothetical protein 
66  inverted 2.00 78862,78881
576554,576573
20 MG065 , MG468.1   ABC transporter, ATP-binding protein
ABC transporter, ATP binding protein 



Copy #is the number of repeat units
Location is given in genome coordinates
Length is the size of the consensus repeat unit in nucleotides
Gene & Intergenic Id(s) are the ids of the gene and intergenic space records in which the repeat is located
Definitions-Comments are the definition lines from the genes and the comments from the intergenic space records in the previous columns


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