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Haemophilus ducreyi Search Results

Record: 1 of 1  
MiniMap tRNA-Glu-3 rRNA-16S-6 rRNA-23S-6 IGR1402 IGR1404 IGR1407 IGR1405 IGR1406 IGR1408 IGR1403 IGR1401 IGR1400 udp, - HD1908 udp, - HD1909 asnC, - HD1911 udp, - HD1907 HD1915 murI, - HD1906 HD1916 proS, - HD1919 HD1912 yhdM, - HD1917 asnA, - HD1913 udp, - HD1908 udp, - HD1909 asnC, - HD1911 udp, - HD1907 HD1915 murI, - HD1906 HD1916 proS, - HD1919 HD1912 yhdM, - HD1917 asnA, - HD1913 udp, - HD1909 asnC, - HD1911 udp, - HD1907 HD1915 murI, - HD1906 HD1916 proS, - HD1919 udp, - HD1908 HD1912 yhdM, - HD1917 asnA, - HD1913 HD1918 HD1918
* Calculated from Protein Sequence

Gene ID: HD1909

DNA Molecule Name:
1  

Genbank ID:
0

Gene Name:
udp  

Definition:
uridine phosphorylase fragment

Gene Start:
1608188

Gene Stop:
1607982

Gene Length:
207

Molecular Weight*:
7323

pI*:
7.30

Net Charge*:
0.18

EC:
2.4.2.3  

Functional Class:
Purines, pyrimidines, nucleosides, and nucleotides; Salvage of nucleosides and nucleotides  

Pathway: pathway table
Pyrimidine metabolism

Secondary Evidence:
Walton,L., Richards,C.A. and Elwell,L.P.
Nucleotide sequence of the Escherichia coli uridine phosphorylase
udp) gene
Nucleic Acids Res. 17 (16), 6741 (1989)
MEDLINE: 89386014

Comment:
See HD1907, HD1908.

Blast Summary:  PSI-Blast Search
Some significant hits using gapped BLAST to uridine phosphorylase from H. influenzae (1174872), Salmonella typhimurium (2168160, 6960234), Klebsiella aerogenes (3122987), among others.

HD1909 is similar to uridine phosphorylase from T. apllidum (TP1027). No similarities to C. trachomatis, C. pneumoniae, U. urealyticum, T. pallidum, M. genitalium, or M. pneumoniae.

COGS Summary:  COGS Search
BeTs to 4 clades of COG0813
COG name: Purine-nucleoside (and uridine) phosphorylase
Functional Class:  F
The phylogenetic pattern of COG0813 is --------Eb-HUJgp-L---
Number of proteins in this genome belonging to this COG is 2

Blocks Summary:  Blocks Search
***** IPB000845 (Purine and other phosphorylases, family 1) with a combined E-value of 2.8e-07.
    IPB000845A    23-34
    IPB000845B    46-68


ProDom Summary:  Protein Domain Search
Residues 30-68 are 74% similar to a (PHOSPHORYLASE NUCLEOSIDASE COMPLETE PROTEOME) protein domain (PD003928) which is seen in UDP_HAEIN.



Paralogs:  Local Blast Search

HD1909 is paralogously related to HD0889 (7e-04).


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

PDB Hit:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MSDVFHLGLTKAMLKGAKVAIVPGDPARSERIAKKMENPEFLVSTREFTS
WLGYLDGEAVIVCSTGIG$

Gene Nucleotide Sequence:  Sequence Viewer
ATGTCTGACGTATTCCATTTAGGTTTAACTAAAGCAATGTTAAAAGGGGC
AAAAGTAGCCATTGTCCCGGGTGATCCAGCACGTAGTGAACGGATTGCCA
AAAAAATGGAGAATCCAGAGTTTTTAGTTTCAACCCGTGAATTTACCTCA
TGGTTAGGTTATTTAGACGGCGAAGCTGTTATCGTTTGTTCCACCGGAAT
TGGTTGA


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