Basic Search | Intermediate Search | Advanced SQL Search | Gene Image Map |  Home

Haemophilus ducreyi Search Results

Record: 1 of 1  
MiniMap IGR1236 IGR1244 IGR1238 IGR1234 IGR1239 IGR1241 IGR1240 IGR1237 IGR1235 IGR1242 IGR1243 HD1694 greA, - HD1699 HD1698 mod, - HD1693 mod, - HD1691 res, - HD1690 purH, - HD1702 pbp4, - HD1701 HD1697 tpn, - HD1696 pbp4,dacB, - HD1700 purH, - HD1703 HD1694 greA, - HD1699 HD1698 mod, - HD1693 mod, - HD1691 res, - HD1690 purH, - HD1702 pbp4, - HD1701 HD1697 tpn, - HD1696 pbp4,dacB, - HD1700 purH, - HD1703 Type: tandem, Name:  - 18 HD1694 greA, - HD1699 HD1698 mod, - HD1693 mod, - HD1691 res, - HD1690 mod, - HD1692 mod, - HD1692 purH, - HD1702 pbp4, - HD1701 HD1697 tpn, - HD1696 pbp4,dacB, - HD1700 purH, - HD1703 tpn, - HD1695 tpn, - HD1695
* Calculated from Protein Sequence

Gene ID: HD1695

DNA Molecule Name:
1  

Genbank ID:
0

Gene Name:
tpn  

Definition:
transposase

Gene Start:
1412933

Gene Stop:
1413400

Gene Length:
468

Molecular Weight*:
17599

pI*:
10.00

Net Charge*:
11.10

EC:
 

Functional Class:
Other categories; Transposase  

Pathway: pathway table

Comment:


Blast Summary:  PSI-Blast Search
Residues 1-154 are 37% similar to 21109571 transposase [Xanthomonas axonopodis pv. citri str. 306].

Three significant hitts in gapped BLAST to putative transposase proteins; e.g. residues 35-150 are 24% similar to (AF225215) putative transposase of Xanthomonas oryzae pv. oryzae, residues 22-150 are 24% similar to (AF016485) putative ISH4 transposase of Halobacterium, residues 36-150 are 27% similar to (AF249895) putative transposase of Xanthomonas pv. mangiferaeindicae.

COGS Summary:  COGS Search
No hits to the COGs database.

Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

ProDom Summary:  Protein Domain Search
Residues 35-150 are 24% similar to a (MEMBRANE OUTER TRANSPOSASE TBUX) protein domain (PD039757) which is seen in Q9L792_BBBBB.



Paralogs:  Local Blast Search
HD1695 is paralogously related to HD0291 (2e-91), HD1612 (8e-74), HD1616 (4e-37), HD1689 (9e-35) and HD0295 (1e-24).


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

PDB Hit:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MAQHFLLNSKAKTLSTLQIARLSDEQAFDLLCDMRWGSKQHVTCPKCGVQ
HQAYFIASHKQWRCKHCHHTFSVTSGTIFANRKASIQTYLYVLARFVNAV
KGVSALEISRDAKINYRTAFVLCHKLRKALLENRDMHPLSGEVDMDGTYV
HPAPP$

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCTCAACACTTCCTCTTAAACTCAAAAGCAAAAACGCTTTCTACGTT
ACAGATAGCCCGCCTATCTGACGAACAAGCGTTCGACTTGCTTTGTGATA
TGCGTTGGGGAAGTAAACAGCACGTAACGTGTCCTAAATGCGGTGTACAA
CATCAAGCCTATTTTATTGCTAGTCATAAACAATGGCGTTGCAAACATTG
TCATCATACCTTTTCAGTGACATCAGGCACAATCTTTGCCAACCGTAAGG
CTTCCATTCAAACCTACTTGTATGTATTAGCTCGTTTTGTGAATGCGGTT
AAGGGCGTATCTGCACTAGAAATCTCTCGTGACGCTAAAATTAATTATCG
TACAGCTTTTGTGCTTTGTCATAAATTGCGTAAAGCCTTGTTAGAAAATC
GAGATATGCACCCCCTTTCAGGCGAAGTTGATATGGACGGCACTTATGTT
CACCCTGCACCTCCGTAA


Los Alamos National Laboratory     
Operated by the University of California for the National Nuclear Security Administration,
of the US Department of Energy.     Copyright © 2001 UC | Disclaimer/Privacy