Basic Search | Intermediate Search | Advanced SQL Search | Gene Image Map |  Home

Haemophilus ducreyi Search Results

Record: 1 of 1  
MiniMap IGR1059 IGR1058 IGR1068 IGR1061 IGR1062 IGR1069 IGR1067 IGR1060 IGR1064 IGR1065 IGR1066 IGR1057 IGR1063 HD1441 HD1449 HD1448 HD1446 HD1437 HD1451 HD1443 HD1439 gspD, - HD1436 HD1444 HD1452 nadV, - HD1445 ompP2,ompH, - HD1435 nadV, - HD1447 HD1441 HD1449 HD1448 HD1446 HD1437 HD1451 HD1443 HD1439 gspD, - HD1436 HD1444 HD1452 nadV, - HD1445 ompP2,ompH, - HD1435 nadV, - HD1447 HD1448 HD1446 HD1437 HD1439 gspD, - HD1436 HD1444 HD1440 HD1442 HD1450 HD1443 HD1452 HD1441 HD1451 HD1442 HD1449 HD1440 HD1450 nadV, - HD1445 ompP2,ompH, - HD1435 nadV, - HD1447
* Calculated from Protein Sequence

Gene ID: HD1444

DNA Molecule Name:
1  

Genbank ID:
0

Gene Name:


Definition:
conserved hypothetical protein

Gene Start:
1182383

Gene Stop:
1181229

Gene Length:
1155

Molecular Weight*:
44219

pI*:
8.90

Net Charge*:
10.47

EC:
 

Functional Class:
Unknown  

Pathway: pathway table

Comment:


Blast Summary:  PSI-Blast Search
Two significant hits using gapped BLAST to hypothetical protein from Bacteriophage If1 (6136513) and Pseudomonas sp (94979). HD1444 is 51% similar to residues 3-319 from Y320_BPIF1.

No similarities to C. trachomatis, C. pneumoniae, U. urealyticum, T. pallidum, M. genitalium, or M. pneumoniae.

COGS Summary:  COGS Search
No hits to the COGs database.

Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

ProDom Summary:  Protein Domain Search
Residues 64-381 are 51% similar to a (ORF320) protein domain (PD182759) which is seen in Y320_BPIF1.



Paralogs:  Local Blast Search
HD1444 is paralogously related to HD1452 (0.0).


Pfam Summary:  Pfam Search
Residues 289 to 379 (E-value = 4.2e-09) place HD1444 in the Phage_X family which is described as Phage X family (PF05155)

PDB Hit:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MNYHIDWLTIEQDFGFEIPESILAAIFDFGMVGIHLDTGEMQEGIKTGKY
RHKGSFCDEVSIKVSGSVIKMEGNPSRWGKVENVLGFTDVDSCVACFNNI
LFSLNLPLFTRCTEVFYLQGKEGEKVKKFSNGAIIKRLDITTNKSVGKGN
ERTFLKALSQMRYRNSVGRLHTNHCTVDWLSEKGNANLIYPSCYIKHEEM
KLHSYDKIKNKFGQQAKEFQYYQKVFDYCLENGVVRFEQKLKSRYLQREN
LCYWGLSDFSKLNEIQDGFINMYKKLSVSEVKLETIAQQLVSQGVVDTLR
KANTTAYYAMRWSSGEDLSLLPIATFKRHRAILRKIGIDIANPCDIEKFQ
AVRVISCEQIFVKPFKAPDFYQYPSNMPQLRLVA$

Gene Nucleotide Sequence:  Sequence Viewer
ATGAATTATCACATTGACTGGCTGACAATAGAACAAGATTTTGGATTCGA
AATCCCTGAGTCCATACTTGCGGCCATCTTTGATTTCGGCATGGTAGGTA
TACATTTAGATACAGGTGAAATGCAAGAAGGGATTAAAACAGGCAAATAC
AGACACAAAGGTAGCTTTTGTGATGAAGTTAGCATAAAAGTTTCTGGCTC
AGTGATAAAAATGGAAGGCAACCCCAGTCGTTGGGGTAAAGTTGAGAATG
TACTTGGCTTTACAGATGTCGATTCATGTGTCGCCTGTTTCAATAACATT
TTATTTTCTTTGAATTTACCCCTGTTCACCCGTTGCACTGAGGTTTTCTA
TTTACAAGGTAAAGAGGGTGAGAAAGTTAAAAAGTTTTCTAACGGCGCAA
TTATTAAACGCCTGGACATCACAACAAATAAATCTGTCGGTAAAGGCAAT
GAGCGCACCTTTCTCAAAGCACTTTCGCAAATGCGTTATCGTAATTCTGT
TGGAAGATTACACACAAACCACTGCACGGTAGATTGGTTAAGTGAAAAGG
GTAATGCCAATTTAATTTACCCGAGTTGTTATATTAAACATGAAGAGATG
AAGCTTCATTCTTACGACAAGATAAAAAACAAATTTGGGCAACAGGCTAA
AGAGTTTCAATATTACCAAAAGGTATTTGATTACTGTTTAGAGAATGGAG
TGGTTAGATTTGAACAGAAGTTAAAGTCAAGGTATTTACAACGAGAGAAT
TTGTGTTATTGGGGTTTAAGTGATTTTTCAAAATTAAATGAAATTCAAGA
TGGGTTTATAAACATGTATAAAAAATTAAGCGTAAGTGAAGTGAAATTAG
AAACCATTGCACAACAACTTGTTTCTCAAGGAGTGGTAGACACTTTACGT
AAAGCCAATACCACTGCTTATTATGCAATGCGATGGTCAAGTGGTGAAGA
TTTGAGTTTGTTGCCGATTGCAACTTTTAAAAGACACAGAGCTATTCTTA
GAAAAATTGGTATCGACATTGCCAATCCTTGCGACATTGAAAAATTCCAG
GCTGTTCGTGTTATTTCATGTGAACAGATTTTTGTTAAACCATTTAAAGC
CCCTGATTTTTATCAATATCCAAGCAATATGCCTCAATTACGGCTAGTTG
CTTAA


Los Alamos National Laboratory     
Operated by the University of California for the National Nuclear Security Administration,
of the US Department of Energy.     Copyright © 2001 UC | Disclaimer/Privacy