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Haemophilus ducreyi Search Results

Record: 1 of 1  
MiniMap IGR859 IGR864 IGR857 IGR860 IGR862 IGR861 IGR863 IGR854 IGR858 IGR855 IGR856 pyrR, - HD1181 HD1171 hel,lpp, - HD1170 ksgA, - HD1179 surA, - HD1180 rfaE,rbsK, - HD1182 rseC, - HD1174 rpoE, - HD1172 rseA,mclA, - HD1173 pyrR,upp, - HD1178 fadD, - HD1176 pyrR, - HD1181 HD1171 hel,lpp, - HD1170 ksgA, - HD1179 surA, - HD1180 rfaE,rbsK, - HD1182 rseC, - HD1174 rpoE, - HD1172 rseA,mclA, - HD1173 pyrR,upp, - HD1178 fadD, - HD1176 pyrR, - HD1181 HD1171 hel,lpp, - HD1170 ksgA, - HD1179 surA, - HD1180 rfaE,rbsK, - HD1182 rseC, - HD1174 rpoE, - HD1172 rseA,mclA, - HD1173 pyrR,upp, - HD1178 fadD, - HD1176 fadD, - HD1177 fadD, - HD1175 fadD, - HD1177 fadD, - HD1175
* Calculated from Protein Sequence

Gene ID: HD1175

DNA Molecule Name:
1  

Genbank ID:
0

Gene Name:
fadD  

Definition:
long-chain-fatty-acid-CoA ligase

Gene Start:
954520

Gene Stop:
955197

Gene Length:
678

Molecular Weight*:
25774

pI*:
10.50

Net Charge*:
11.15

EC:
6.2.1.3  

Functional Class:
Fatty acid and phospholipid metabolism  

Pathway: pathway table
Fatty acid metabolism

Secondary Evidence:
Weimar,J.D., DiRusso,C.C., Delio,R. and Black,P.N.
Functional role of fatty acyl-coenzyme A synthetase in the
transmembrane movement and activation of exogenous long-chain fatty acids. Amino acid residues within the ATP/AMP signature motif of Escherichia coli FadD are required for enzyme activity and fatty acid transport
J. Biol. Chem. 277 (33), 29369-29376 (2002)
MEDLINE: 22162442


Comment:
0

Blast Summary:  PSI-Blast Search
Many significant hits using gapped BLAST to long-chain-fatty-acid-CoA ligase from H. influenzae (1170729), E. coli (462484), Neisseria meningitidis (7226802), among others. HD1175 is % similar to residues 701-210 of LCFA_HAEIN, and 64% similar to residues 1-210 of LCFA_ECOLI.

No similarities to C. trachomatis, C. pneumoniae, U. urealyticum, T. pallidum, M. genitalium, or M. pneumoniae.

COGS Summary:  COGS Search
BeTs to 6 clades of COG0318
COG name: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Functional Class: I
The phylogenetic pattern of COG0318 is A-t-Y---EBRh------inx
Number of proteins in this genome belonging to this COG is 3

Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

ProDom Summary:  Protein Domain Search
Residues 90-148 are 84% similar to a (LIGASE COMPLETE PROTEOME) protein domain (PD021808) which is seen in Q9CMU9_PASMU.

Residues 30-89 are 80% similar to a (LIGASE SYNTHETASE PHOSPHOPANTETHEINE) protein domain (PD000102) which is seen in LCFA_HAEIN.



Paralogs:  Local Blast Search
HD1175 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

PDB Hit:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MDKIWLKNYPEGSAKTIDVHPYESLVEMFEMSIRKHPDTPAYINMGQILT
FRKLEERSRAFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLV
VVNVNPLYTPRELEHQLNDSGATAIVIISNFAATLEKVVFNTQIEHVILT
RMGDQLSFGKRTLVNFIVKYVKKLVPKYKLPHAVSFREALSVGKQRQYVK
PLLDKNDLAFFNIQVARPVLLKELC$

Gene Nucleotide Sequence:  Sequence Viewer
ATGGATAAAATTTGGTTAAAAAATTATCCGGAAGGTTCGGCAAAAACTAT
TGATGTTCATCCTTATGAATCATTAGTGGAAATGTTTGAAATGTCGATAC
GTAAACATCCAGATACTCCTGCGTATATTAATATGGGGCAAATTCTTACG
TTTCGTAAGTTGGAAGAACGTAGTCGTGCTTTTGCAGCATATTTACAAAA
TGAATTACGCTTAAAAAAAGGTGATCGAATTGCATTAATGATGCCAAATT
TATTGCAATATCCGATCGCTTTATTTGGTGCCTTGCGAGCAGGTTTAGTG
GTAGTAAATGTTAACCCACTTTATACGCCTCGTGAATTAGAACATCAATT
AAATGATAGCGGTGCAACAGCGATTGTTATTATTTCAAACTTTGCCGCTA
CTTTAGAAAAGGTAGTGTTTAATACTCAAATTGAACACGTGATTTTAACC
AGAATGGGCGATCAGCTTTCATTTGGTAAACGTACTTTAGTTAATTTTAT
TGTGAAGTACGTGAAGAAGTTAGTGCCAAAATATAAGTTGCCACATGCGG
TTAGTTTTCGTGAAGCTTTGAGCGTTGGTAAACAGCGACAGTATGTTAAG
CCATTGCTAGATAAAAATGATCTTGCTTTTTTCAATATACAGGTGGCACG
ACCGGTGTTGCTAAAGGAGCTATGTTAA


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