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Haemophilus ducreyi Search Results

Record: 1 of 1  
MiniMap IGR365 IGR361 IGR366 IGR362 IGR364 IGR367 IGR368 IGR363 HD0516 HD0526 HD0520 HD0517 HD0525 HD0522 HD0523 HD0519 HD0529 HD0518 HD0515 HD0527 HD0516 HD0526 HD0520 HD0517 HD0525 HD0522 HD0523 HD0519 HD0529 HD0518 HD0515 HD0527 HD0516 HD0526 HD0517 HD0525 HD0523 HD0519 HD0529 HD0518 HD0515 HD0527 HD0521 HD0520 HD0522 HD0521
* Calculated from Protein Sequence

Gene ID: HD0523

DNA Molecule Name:
1  

Genbank ID:
0

Gene Name:


Definition:
conserved hypothetical protein

Gene Start:
398549

Gene Stop:
399292

Gene Length:
744

Molecular Weight*:
27348

pI*:
5.30

Net Charge*:
-4.26

EC:
 

Functional Class:
Unknown  

Pathway: pathway table

Comment:


Blast Summary:  PSI-Blast Search
Residues 5-245 are 31% similar to >17545582|ref|NP_518984.1| conserved hypothetical protein [Ralstonia solanacearum]. Otherwise, a weak significant hit in gapped BLAST to a hypothetical protein sequence,e.g. residues 1-245 are 23% similar to a hypothetical protein in Xylella fastidiosa (11346118|).

COGS Summary:  COGS Search
No hits to the COGs database.

Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

ProDom Summary:  Protein Domain Search
No significant hits to the ProDom database.

Paralogs:  Local Blast Search
HD0523 is paralogously related to HD1565 (1e-139) and HD0136 (4e-97).


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

PDB Hit:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MRTESYSYGQGAVYLAERLPNGQPGAFRWVGDVSELSVSLSVEEFTHKES
YSGQRQEVKKIITGKSGEVLIKFHEMSKENLSLMLLGEASTIKAGNVTKE
ALPDDIKAGDRIALAHQNVSDVKIAELKENTDFVVDAIFGTIEFLKEQKS
KKLTVDYNYGDVDVIALLTTNPKDLFLRFEGINLAETNEWNLVELYKINF
NPTEALNLINNENALDALSAKAKVLADTTKAGDSTLGRFGRVVKIKK$

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGAACAGAAAGTTACAGCTACGGTCAAGGTGCAGTCTATCTGGCTGA
ACGTTTACCGAACGGGCAACCCGGCGCATTCCGCTGGGTCGGTGATGTGT
CGGAACTATCCGTGTCTTTAAGCGTGGAAGAATTTACACACAAAGAATCT
TACAGCGGTCAGCGTCAAGAAGTGAAGAAAATCATCACAGGTAAATCCGG
TGAAGTTTTAATCAAATTTCACGAAATGAGCAAAGAAAACCTGAGCTTAA
TGCTTTTGGGCGAAGCCAGCACAATTAAAGCAGGTAATGTAACAAAAGAA
GCATTGCCTGATGATATTAAAGCCGGCGATCGTATTGCTTTAGCACATCA
AAATGTGAGCGATGTGAAAATTGCTGAATTAAAAGAAAACACGGATTTTG
TTGTTGATGCGATTTTCGGGACGATTGAGTTTTTAAAAGAACAAAAAAGC
AAGAAATTAACTGTCGATTACAACTATGGCGATGTTGATGTTATTGCACT
TTTAACTACTAACCCGAAAGATTTATTCCTACGTTTCGAAGGCATTAACT
TAGCTGAAACGAATGAATGGAATCTTGTTGAGTTGTACAAAATCAACTTC
AATCCGACAGAAGCCTTGAATTTAATCAACAACGAAAATGCGCTTGATGC
GTTAAGTGCGAAAGCCAAAGTGTTAGCCGATACGACTAAGGCGGGTGATA
GCACGCTCGGGCGTTTCGGGCGCGTTGTTAAGATTAAAAAATAA


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