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Haemophilus ducreyi Search Results

Record: 1 of 1  
MiniMap IGR74 IGR72 IGR78 IGR73 IGR77 IGR69 IGR81 IGR71 IGR79 IGR75 IGR80 IGR70 IGR76 HD0109 HD0119 HD0099 HD0100 HD0120 HD0101 HD0114 HD0096 HD0106 HD0115 HD0104 HD0103 HD0118 HD0107 HD0110 HD0112 HD0097 HD0105 muB, - HD0095 HD0123 HD0109 HD0119 HD0099 HD0100 HD0120 HD0101 HD0114 HD0096 HD0106 HD0115 HD0104 HD0103 HD0118 HD0107 HD0110 HD0112 HD0097 HD0105 muB, - HD0095 HD0123 HD0109 HD0119 HD0097 HD0105 muB, - HD0095 HD0123 HD0102 HD0117 HD0098 HD0113 mor, - HD0111 HD0108 HD0121 HD0121 HD0100 HD0115 HD0103 HD0118 HD0107 HD0110 HD0112 HD0096 HD0117 HD0098 mor, - HD0111 HD0108 HD0120 HD0101 HD0114 HD0106 HD0104 HD0113 HD0099 HD0102
* Calculated from Protein Sequence

Gene ID: HD0108

DNA Molecule Name:
1  

Genomic Island ID:
1

Genbank ID:
0

Gene Name:


Definition:
conserved hypothetical protein

Gene Start:
80772

Gene Stop:
81140

Gene Length:
369

Molecular Weight*:
14400

pI*:
10.40

Net Charge*:
8.19

EC:
 

Functional Class:
Unknown  

Pathway: pathway table

Comment:


Blast Summary:  PSI-Blast Search
Residues 2-112 are weakly similar (32%) to 15794761 hypothetical protein [Neisseria meningitidis Z2491]. No other matches in gapped BLAST.

COGS Summary:  COGS Search
No hits to the COGs database.

Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

ProDom Summary:  Protein Domain Search
Residues 2-112 are 32% similar to a (PROTEOME COMPLETE NMA1873) protein domain (PD301421) which is seen in Q9JQV7_NEIME.



Paralogs:  Local Blast Search
HD0108 is paralogously related to HD1519 (5e-31).


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

PDB Hit:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MDEQWLKRAIANGFAMLVLLKLKNAPREDEIKHVMEAWFRAITYKKRFEQ
TIDEPRFNAAFAKLAQTCEWFPTPKELFDALPARKEPKLTQIEYKSDPET
ARKNIEKLKKMIKGAYVRINKT$

Gene Nucleotide Sequence:  Sequence Viewer
ATGGATGAACAATGGCTAAAACGGGCTATCGCCAACGGGTTTGCTATGTT
AGTGCTGTTGAAACTCAAAAACGCGCCGCGCGAGGACGAAATTAAGCATG
TGATGGAAGCGTGGTTTAGGGCGATAACCTATAAAAAACGCTTTGAGCAG
ACAATCGACGAGCCGAGATTTAACGCTGCATTTGCCAAACTTGCACAGAC
CTGCGAATGGTTTCCGACTCCGAAAGAATTATTTGACGCGTTGCCGGCAA
GAAAAGAGCCGAAATTAACGCAGATTGAATATAAAAGCGACCCCGAAACG
GCGCGCAAAAACATTGAAAAACTGAAAAAAATGATTAAGGGTGCTTATGT
ACGCATTAACAAAACCTAA


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