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Chlamydia pneumoniae Search Results

Record: 1 of 1  
MiniMap IGR503 IGR506 IGR510 IGR500 IGR504 IGR508 IGR512 IGR499 IGR502 IGR509 IGR511 IGR505 IGR498 IGR501 IGR507 IGR513 IGR514 rs17, - CPn0638 rs19, - CPn0643 rl23, - CPn0645 rl24, - CPn0636 rl22, - CPn0642 rl14, - CPn0637 rl18, - CPn0632 rs8, - CPn0634 rl16, - CPn0640 rs5, - CPn0631 rl5, - CPn0635 rl6, - CPn0633 rs3, - CPn0641 rl4, - CPn0646 rl3, - CPn0647 rl2, - CPn0644 CPn0648 secY, - CPn0629 rs17, - CPn0638 rs19, - CPn0643 rl23, - CPn0645 rl24, - CPn0636 rl22, - CPn0642 rl14, - CPn0637 rl18, - CPn0632 rs8, - CPn0634 rl16, - CPn0640 rs5, - CPn0631 rl5, - CPn0635 rl6, - CPn0633 rs3, - CPn0641 rl4, - CPn0646 rl3, - CPn0647 rl2, - CPn0644 CPn0648 secY, - CPn0629 rl23, - CPn0645 rl22, - CPn0642 rl14, - CPn0637 rl18, - CPn0632 rs8, - CPn0634 rs5, - CPn0631 rl5, - CPn0635 rl6, - CPn0633 rs3, - CPn0641 rl4, - CPn0646 rl3, - CPn0647 rl2, - CPn0644 CPn0648 secY, - CPn0629 rl29, - CPn0639 rl15, - CPn0630 rl15, - CPn0630 rl16, - CPn0640 rs17, - CPn0638 rs19, - CPn0643 rl24, - CPn0636 rl29, - CPn0639
* Calculated from Protein Sequence

Gene ID: CPn0640

DNA Molecule Name:
1  

Genbank ID:


Gene Name:
rl16  

Definition:
50S ribosomal protein L16

Gene Start:
726377

Gene Stop:
725961

Gene Length:
417

Molecular Weight*:
15789

pI*:
11.80

Net Charge*:
21.18

EC:
 

Functional Class:
translation; ribosomal proteins  

Pathway: pathway table
Molecular Assembly; Ribosome assembly

Comment:
The L16 protein is thought to bind directly to
23S RNA.

Blast Summary:  PSI-Blast Search
CPn0640 is similar to TP0196 in T. pallidum,
UU238 in U. urealyticum and MG158 in M. genitalium.

CPn0640 is orthologously related to CT521 and
they share 94% similarity.

COGS Summary:  COGS Search
BeTs to 17 clades of COG0197
COG name: Ribosomal protein L16/L10E
Functional Class:  J
The phylogenetic pattern of COG0197 is amtkYqvcebrhujgpolinx
Number of proteins in this genome belonging to this COG is 1

Blocks Summary:  Blocks Search


ProDom Summary:  Protein Domain Search


Paralogs:  Local Blast Search
No evidence of paralogs in C. pneumoniae.



Pfam Summary:  Pfam Search
Residues 1 to 132 (E-value = 1.3e-80) place CPn0640 in the Ribosomal_L16 family which is described as Ribosomal protein L16 (PF00252)

PDB Hit:


Gene Protein Sequence:
MLMPKRTKFRKQQKGQFAGLSKGATFVDFGEYAMQTLERGWVTSRQIEAC
RVAINRYLKRRGKVWIRIFPDKSVTKKPAETRMGKGKGAPDHWVAVVRPG
RILFEVANVSKEDAQDALRRAAAKLGIKTRFVKRVERV$

Gene Nucleotide Sequence:  Sequence Viewer
ATGTTAATGCCTAAACGAACAAAATTTCGTAAGCAACAAAAAGGACAGTT
TGCAGGATTAAGTAAGGGAGCTACATTTGTAGACTTCGGAGAATATGCAA
TGCAAACTCTTGAGCGTGGCTGGGTCACCAGTCGTCAAATTGAAGCCTGC
AGGGTTGCGATTAATAGATATTTAAAACGTCGAGGAAAAGTATGGATTCG
TATTTTTCCAGACAAAAGTGTAACAAAAAAGCCTGCAGAAACTCGTATGG
GTAAAGGTAAAGGGGCCCCAGATCATTGGGTAGCAGTAGTTCGTCCAGGA
CGTATATTGTTTGAAGTAGCGAATGTCTCTAAAGAAGATGCTCAAGATGC
CCTCCGAAGAGCTGCTGCCAAACTAGGAATAAAAACACGTTTTGTTAAGC
GAGTGGAAAGGGTATAA


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