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Chlamydia pneumoniae Search Results

Record: 1 of 1  
MiniMap IGR288 IGR285 IGR284 IGR286 IGR291 IGR283 IGR287 IGR289 IGR290 CPn0358 CPn0356 CPn0357 CPn0355 gnd, - CPn0360 CPn0353 CPn0352 CPn0354 adt, - CPn0351 lepA, - CPn0359 CPn0358 CPn0356 CPn0357 CPn0355 gnd, - CPn0360 CPn0353 CPn0352 CPn0354 adt, - CPn0351 lepA, - CPn0359 CPn0358 CPn0357 CPn0355 gnd, - CPn0360 CPn0356 CPn0353 CPn0352 CPn0354 adt, - CPn0351 lepA, - CPn0359
* Calculated from Protein Sequence

Gene ID: CPn0355

DNA Molecule Name:
1  

Genbank ID:


Gene Name:


Definition:
Chlamydia pneumoniae-specific conserved hypothetical protein

Gene Start:
399889

Gene Stop:
398588

Gene Length:
1302

Molecular Weight*:
48606

pI*:
7.40

Net Charge*:
2.15

EC:
 

Functional Class:
unknown; Chlamydia pneumoniae-specific proteins  

Pathway: pathway table

Comment:


Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST outside of sequences in C.pneumoniae.
No significant similarity to C.trachomatis, T.pallidum, M.genitalium, or U.urealyticum.

COGS Summary:  COGS Search
No hit to the COGs database.

Blocks Summary:  Blocks Search
None.

ProDom Summary:  Protein Domain Search
None.

Paralogs:  Local Blast Search
Several significant hits to hypothetical proteins in C.pneumoniae:

Residues 3-368 are 28% similar to residues 6-368 of CPn0352.
Residues 3-359 are 25% similar to residues 1-395 of CPn0354.
Residues 22-266 are 26% similar to residues 26-253 of CPn0357.

Pfam Summary:  Pfam Search
Residues 4 to 359 (E-value = 5.1e-256) place CPn0355 in the DUF1389 family which is described as Protein of unknown function (DUF1389) (PF07146)

Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
29  
53
transmembrane  
58  
75
coil-coil  
221  
254

PDB Hit:


Gene Protein Sequence:
MSMTIVPHALFKNHCECHSTFPLSSRTIVRIAIASLFCIGALAALGCLAP
PVSYIVGSVLAFIAFVILSLVILALIFGEKKLPPTPRIIPDRFTHVIDEA
YGLSISAFVREQQVTLAEFRQFSTALLCNISPEEKIKQLPSELRSKVESF
GISRLAGDLEKNNWPIFEDLLSQTCPLYWLQKFISAGDPQVCRDLGVPRE
CYGYYWLGPLGYSTAKATIFCKETHHILQQLTKEDVLLLKNKALQEKWDT
DEVKAIVERIYTTYTARGTLKTEAGGLTKETISKELLLLSLHGYSFDQLQ
LITQLPRDAWDWLCFVDNSTAYNLQLCALVGALSSQNLLDESSIDFDVNL
GLYVIQDLKEAVQAFSASDEPKKELGKFLLRHLSSVSKRLESVLRQGLHR
IALEHGNARARVYDVNFVTGARIHRKTSIFFKD$

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGCATGACGATCGTTCCACATGCTTTATTTAAAAATCATTGCGAGTG
TCATTCTACCTTTCCTTTGAGTTCAAGGACTATTGTAAGAATAGCCATTG
CCAGCCTCTTTTGTATAGGTGCATTAGCAGCTTTAGGCTGTTTGGCTCCT
CCCGTTTCTTATATTGTTGGGAGTGTTTTAGCTTTTATTGCCTTTGTCAT
TCTTTCTTTAGTAATTTTAGCTTTGATTTTTGGAGAGAAGAAGCTTCCAC
CAACACCAAGAATCATTCCTGATAGATTTACTCACGTGATAGATGAAGCT
TATGGCCTTTCAATCTCTGCATTTGTAAGAGAACAGCAGGTAACATTAGC
CGAGTTTAGACAATTTTCTACTGCCCTGTTGTGTAACATATCTCCTGAAG
AGAAAATCAAACAATTGCCTTCTGAATTGCGAAGTAAAGTAGAGAGTTTT
GGTATTAGCAGGCTCGCAGGTGATTTAGAAAAGAATAATTGGCCAATATT
TGAAGATCTTTTAAGCCAAACCTGCCCGTTATATTGGCTTCAGAAATTTA
TATCAGCAGGAGATCCACAAGTTTGTAGAGACCTAGGTGTCCCTAGAGAA
TGTTATGGGTACTATTGGCTAGGGCCTTTGGGATACAGTACAGCTAAGGC
TACAATTTTTTGTAAAGAGACGCATCATATTCTTCAACAATTAACGAAAG
AGGACGTTCTTTTATTAAAAAACAAGGCTCTTCAAGAGAAATGGGATACT
GATGAAGTCAAAGCAATTGTAGAGCGTATCTACACTACCTATACGGCACG
AGGAACTCTAAAGACCGAAGCAGGGGGACTTACAAAAGAGACAATCAGTA
AGGAATTGCTATTGTTGAGCTTGCATGGCTATTCTTTTGATCAGCTACAG
CTGATCACTCAACTTCCTAGAGATGCTTGGGATTGGCTGTGTTTTGTAGA
TAACAGTACCGCATACAACCTTCAGCTTTGTGCTCTTGTAGGAGCTTTGT
CATCCCAAAATCTTCTTGACGAATCTTCTATCGATTTTGATGTAAACCTA
GGCCTGTATGTGATTCAGGATCTAAAAGAAGCTGTTCAAGCATTTTCTGC
TTCTGATGAGCCAAAGAAAGAACTAGGTAAATTCTTGTTAAGGCATTTGA
GTTCAGTTTCTAAGCGATTAGAGAGTGTATTAAGACAGGGTCTTCACAGA
ATAGCTCTAGAGCATGGAAATGCCAGAGCTAGGGTTTATGACGTCAATTT
TGTAACAGGAGCTAGAATTCATAGGAAGACGAGTATCTTCTTTAAAGACT
AA


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