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Haemophilus ducreyi




Three different base composition analyses were performed on the coding regions in the Haemophilus ducreyi genome: G+C content (%), genome signature, and codon bias. The genome signature and codon bias were determined according to methods established by Samuel Karlin (Trends Microbiol. 2001 Jul;9(7):335-43.). The codon bias of each gene was calculated against both the whole genome and the set of ribosomal proteins. Ribosomal proteins in microbial genomes are typically encoded by genes that have a codon usage distinct from the genome mean. Ribosomal proteins and genes with codon usage patterns similar to them have been linked to gene expression (Karlin S, Mrazek J. J Bacteriol. 2000 Sep;182(18):5238-50.). Genes that deviate from the genome, but not the set of ribosomal proteins are considered putative highly expressed, whereas genes that deviate from both the genome mean and the ribosomal proteins are considered putative alien genes. Each of these analyses is displayed below as well as a measure of deviation from the genome mean value. The table is ordered by gene ID numbers, which reflect genome position. Thus, gene clusters with deviant base composition can be identified. These clusters may have been the result of a lateral gene transfer event and are catalogued in the Genomic Island Table. Genes that are 3 or more standard deviations from the mean in any of the base composition metrics are catalogued the Deviant Gene Table.




Metric Mean Value Standard Deviation
 G+C Content (%) 38.75   4.38  
 Genome Signature 138   70  
 Codon Bias (Genome) 372   149  
 Codon Bias (Ribosomal) 476   141  


Standard deviations are indicated by a number of stars:
*       difference from mean is greater than 1.5  standard deviations
**      difference from mean is greater than 2    standard deviations
***     difference from mean is greater than 3    standard deviations
****    difference from mean is greater than 4    standard deviations
*****   difference from mean is greater than 5    standard deviations





 Gene       G+C        Genome      Codon Bias   Codon Bias     Database
  ID 	  Content(%)  Signature     (Genome)    (Ribosomal)    Definition
-------   -------    -----------   ----------   -----------    --------------------
HD0001     42.05         75           166           379        glucose inhibited division protein A
HD0002     38.73         83           319           514        glucose inhibited division protein B
HD0003     33.33        183           330           499        conserved hypothetical protein
HD0004     36.63         95           268           307        ATP synthase F0, subunit a
HD0005     35.29        151           587           361        ATP synthase F0, subunit c
HD0006     38.22        217           345           337        ATP synthase F0, subunit b
HD0007     36.52        151           330           352        ATP synthase F1, subunit delta
HD0008     40.08        108           309           212        ATP synthase F1, subunit alpha
HD0009     36.79         62           261           282        ATP synthase F1, subunit gamma
HD0010      39.3        149           396           268        ATP synthase F1, subunit beta
HD0011     33.33        170           416           352        ATP synthase F1, subunit epsilon
HD0013     37.02        137           368           511        integrase/recombinase (site-specific)
HD0014     37.53         77           351           399        cell-cycle protein, mesJ
HD0015      43.6         74           283           451        tldD protein
HD0016     41.95         63           273           404        ribosomal protein L11 methyltransferase, prmA
HD0017      42.2        139           456           584        possible glucokinase regulatory protein
HD0018     42.68         85           444           536        possible glucokinase regulatory protein (fragment?)
HD0019     43.91        121           444           543        conserved hypothetical protein
HD0020     47.86 **     187           526           697 *      conserved hypothetical protein
HD0021     42.46        176           491           631        conserved hypothetical protein
HD0022     32.68        190           612 *         745 *      hypothetical protein
HD0023     36.71        131           349           619        permease
HD0024     36.27        257 *         390           594        crcB protein (chromosome folding)
HD0025     41.15        115           227           342        anaerobic C4-dicarboxylate transporter
HD0026     41.79         72           278           501        diaminopimelate epimerase, dapF
HD0029     41.36        111           321           423        lysine--tRNA ligase, genX
HD0030     41.89         64           193           322        fumarate reductase flavoprotein subunit A
HD0032      38.5        102           272           328        fumarate reductase iron-sulfur protein
HD0033     36.43        158           473           586        fumarate reductase 15 kD hydrophobic protein
HD0034     39.71        148           403           544        fumarate reductase 13 kD hydrophobic protein
HD0035     35.35        263 *         546           601        hypothetical protein
HD0036     42.16         66           278           455        diaminopimelate decarboxylase, lysA
HD0037     37.91         84           210           380        oxygen-independent coproporphyrinogen
HD0038     42.17         68           283           478        conserved hypothetical protein
HD0039     40.47         87           241           375        thiophene and furan oxidation protein
HD0040     39.23         78           230           306        inner membrane protein, 60 kDa (yidC)
HD0041     30.21 *      355 ***       785 **        748 *      hypothetical protein
HD0042     39.12        148           362           485        conserved hypothetical protein
HD0043      32.5        313 **        719 **        803 **     hypothetical protein
HD0044     31.67 *      267 *         657 *         647        hypothetical protein
HD0045     37.05        137           299           274        major outer membrane protein P5 precursor (OMP P5)
HD0046     35.38        146           351           230        major outer membrane protein homolog, ompA2
HD0047     38.71        334 **        737 **        917 ***    hypothetical protein
HD0048     38.54        324 **        681 **        750 *      hypothetical protein
HD0049     36.91         87           344           524        1-acyl-sn-glycerol-3-phosphate acyltransferase
HD0050     40.31         64           253           458        sufI protein precursor homolog
HD0051     40.99         64           239           291        acetyl-coenzyme-A carboxylase subunit a
HD0052     31.25 *      187           658 *         710 *      hypothetical protein
HD0053     33.92        151           257           420        possible beta-galactoside
HD0054     41.99        180           520           282        elongation factor Tu (tufA)
HD0055     27.08 **     479 ****      759 **        971 ***    hypothetical protein
HD0056     37.07        125           445           519        pantothenate kinase
HD0057     34.63         93           333           435        pantothenate kinase
HD0058     38.15         84           419           619        cytochrome c biogenesis protein
HD0059     36.52        104           370           460        cytochrome c-type biogenesis protein precursor
HD0060     34.98        119           274           421        cytochrome c-type biogenesis protein precursor
HD0061     41.03        135           407           530        molybdopterin biosynthesis protein, mog
HD0062     38.64        134           349           487        nitrogen regulatory protein p-II
HD0063     34.98        129           372           538        lipoprotein signal peptidase
HD0064     42.12         72           269           445        penicillin tolerance protein/isoprenoid biosynthesis
HD0065     40.16        185           523           594        conserved hypothetical protein
HD0066     36.97         62           260           415        conserved hypothetical protein
HD0068     38.57         90           301           332        fine tangled pili major subunit
HD0069     38.07        104           230           383        possible integral membrane protein
HD0070     32.43        258 *         779 **        726 *      hypothetical protein
HD0072     41.67        131           348           438        ferredoxin-type protein, napF
HD0073     35.98        197           433           498        napD protein homolog
HD0074     41.55         74           182           294        periplasmic nitrate reductase precursor
HD0076        43        109           275           437        ferredoxin-type protein (napG)
HD0077     40.16         77           256           435        ferredoxin-type protein napH
HD0078     41.04        115           376           438        periplasmic nitrate reductase (napB)
HD0079     38.51         96           278           339        probable cytochrome c-type protein/denitrification
                                                               system component
HD0081     38.74         85           264           402        UDP-n-acetylenolpyruvoylglucosamine reductase
HD0082     38.35         83           257           424        biotin operon repressor / biotin acetyl coenzyme A
                                                               carboxylase synthetase (birA)
HD0083     26.19 **     243           613 *         570        hypothetical protein
HD0084     42.84        101           200           347        l-lactate dehydrogenase, lctD
HD0085     40.44        165           661 *         785 **     hypothetical protein
HD0086      37.6         86           260           365        RNA polymerase sigma-32 factor
HD0087     31.43 *      244 *         881 ***       999 ***    hypothetical protein
HD0089     43.88        107           483           676        transcriptional regulatory protein
HD0090     44.06        153           530           622        DNA-binding protein (ner)
HD0093     49.18 **     140           539           703 *      Mu-phage transposase A
HD0094     48.95 **     206           584           737 *      Mu-phage transposase A
HD0095     45.97 *      135           486           617        Mu phage DNA transposition protein B
HD0096     47.01 *      183           652 *         757 *      hypothetical protein
HD0097     48.87 **     148           650 *         775 **     conserved hypothetical protein
HD0098     49.37 **     179           587           682        hypothetical protein
HD0099     52.08 ***    260 *        1014 ****     1105 ****   hypothetical protein
HD0100     37.04        240           598 *         499        hypothetical protein
HD0101     45.66 *      192           687 **        867 **     hypothetical protein
HD0102     36.19        207           604 *         694 *      hypothetical protein
HD0103     33.33        227           472           533        hypothetical protein
HD0104     37.76        193           588           644        hypothetical protein
HD0105      43.9        126           446           639        conserved hypothetical protein
HD0106     41.67        200           543           685        hypothetical protein
HD0107     49.68 **     177           654 *         823 **     conserved hypothetical protein
HD0108     44.17        250 *         567           746 *      conserved hypothetical protein
HD0109      44.6        101           575           744 *      hypothetical protein
HD0110     45.65 *       88           653 *         771 **     Mu-like prophage FluMu protein gp16
HD0111     47.62 **     177           553           683        gene C protein - phage Mu
HD0112     50.57 **     130           581           731 *      N-acetylmuramoyl-L-alanine amidase-like protein
HD0113     42.68        151           607 *         720 *      hypothetical protein
HD0114     43.72        226           635 *         807 **     conserved hypothetical protein
HD0115     42.11        256 *         461           626        conserved hypothetical protein
HD0117     51.95 ***    252 *         668 *         786 **     conserved hypothetical protein
HD0118     40.18        194           534           644        hypothetical protein
HD0119     44.34        191           497           709 *      hypothetical protein
HD0120     50.46 **     171           723 **        875 **     hypothetical protein
HD0121     48.77 **     204           495           643        Mu-like prophage FluMu protein gp27
HD0123      50.1 **     129           568           756 *      Mu-like prophage FluMu protein gp28
HD0124     51.78 **     175           572           768 **     Mu-like prophage FluMu protein gp29
HD0125      49.8 **     108           526           683        Mu phage gp30
HD0126      43.4        226           572           738 *      Mu-like prophage FluMu F protein
HD0127     47.07 *      159           541           705 *      Mu-like prophage FluMu G protein 1
HD0128     33.33        502 *****     627 *         811 **     hypothetical protein
HD0129     51.92 ***    187           629 *         830 **     Mu phage I protein
HD0130     51.24 **     206           608 *         777 **     Mu phage I protein
HD0132     50.22 **     139           583           711 *      conserved hypothetical protein
HD0133     45.41 *       93           433           543        hypothetical protein
HD0134      51.9 ***    153           673 **        836 **     Mu-like prophage FluMu protein GP36
HD0135     53.67 ***    159           529           777 **     conserved hypothetical protein
HD0136     46.02 *      130           491           629        conserved hypothetical protein
HD0137     48.48 **     128           641 *         834 **     hypothetical protein
HD0138     48.33 **     221           792 **        958 ***    hypothetical protein
HD0140     51.18 **     188           570           762 **     tail length tape measure protein
HD0141     46.99 *      180           947 ***      1081 ****   hypothetical protein
HD0142     47.25 *      137           633 *         770 **     hypothetical protein
HD0143     60.71 *****  129           678 **        950 ***    bacteriophage TM4 gp14 protein homolog
HD0144     45.83 *      300 **        752 **        920 ***    hypothetical protein
HD0145     49.55 **     132           535           743 *      hypothetical protein
HD0146     46.48 *      142           471           649        hypothetical protein
HD0147     45.79 *      147           571           687        hypothetical protein
HD0148     52.52 ***    170           627 *         843 **     conserved hypothetical protein
HD0149     51.85 **     261 *         927 ***      1035 ***    hypothetical protein
HD0150     49.04 **     130           554           754 *      conserved hypothetical protein
HD0151     52.21 ***    183           664 *         752 *      hypothetical protein
HD0152     50.72 **     213           795 **        929 ***    hypothetical protein
HD0153     47.35 *      207           485           708 *      conserved hypothetical protein
HD0154     51.03 **     146           561           746 *      conserved hypothetical protein
HD0155     44.78        165           527           741 *      hypothetical protein
HD0156      44.4        113           515           668        conserved hypothetical protein
HD0157     38.43        161           533           501        hypothetical protein
HD0158     42.11        165           716 **        770 **     hypothetical protein
HD0159     45.88 *      102           504           679        conserved hypothetical protein
HD0160     40.54        237           681 **        872 **     hypothetical protein
HD0161     37.44        174           459           482        hypothetical protein
HD0162     23.23 ***    499 *****     568           678        hypothetical protein
HD0163     32.66        151           260           392        tfpB protein homolog
HD0164     25.96 **     162           416           537        conserved hypothetical protein
HD0165     39.25         82           248           454        malate:quinone oxidoreductase
HD0166     39.56        112           364           466        S-adenosylmethionine:2-demethylmenaquinone
                                                               methyltransferase.
HD0167     35.24        291 **        628 *         610        hypothetical protein
HD0168     41.29        186           528           515        conserved hypothetical protein
HD0169     38.45        162           445           405        inorganic pyrophosphatase, chain A
HD0170     33.96        243           530           487        hypothetical protein
HD0171     33.33        327 **        771 **        703 *      hypothetical protein
HD0172     41.08        100           267           446        (di)nucleoside polyphosphate hydrolase; possible
                                                               invasion protein
HD0173     39.65        164           371           625        conserved hypothetical protein
HD0174     42.11        137           257           491        prolipoprotein diacylglyceryl transferase
HD0175     31.82 *      204           765 **        708 *      hypothetical protein
HD0176     38.31        157           324           532        phosphoglycolate phosphatase
HD0177     37.61         66           200           367        tryptophanyl-tRNA synthetase (TrpS)
HD0178     33.33        175           328           420        conserved hypothetical protein
HD0179     35.41         67           188           374        lon protease
HD0180     30.11 *      257 *         664 *         702 *      hypothetical protein
HD0181     39.17        144           295           349        D-3-hydroxydecanoyl-(acyl-carrier protein)
                                                               dehydratase
HD0182     29.63 **     106           305           427        conserved hypothetical protein
HD0183     28.89 **     123           336           461        conserved hypothetical protein
HD0184     28.68 **     116           362           469        hypothetical protein
HD0185     34.02        176           468           549        conserved hypothetical protein
HD0186     32.76         83           208           392        exodeoxyribonuclease V gamma chain
HD0187     35.36         50           150           348        protease III precursor
HD0188     42.77        100           275           356        heat shock protein, dnaJ
HD0189     38.58        112           364           211        heat shock protein 70, dnaK
HD0190     24.51 ***    250 *         509           540        hypothetical protein
HD0191     36.69         67           174           392        metallopeptidase
HD0192        38        363 ***       445           379        hypothetical protein
HD0193     31.25 *      421 ****      665 *         802 **     hypothetical protein
HD0194      41.9        123           214           325        ribonuclease E (rne)
HD0195     36.04         89           260           484        conserved hypothetical protein
HD0196     33.91        143           481           578        conserved hypothetical protein
HD0197     40.51         86           217           360        3-octaprenyl-4-hydroxybenzoate carboxy-lyase
                                                               (Polyprenyl p-hydroxybenzoate decarboxylase)
HD0198     39.34         92           298           439        periplasmic zinc transporter / adhesin B precursor
HD0199     40.76        100           332           420        ribose 5-phosphate isomerase A
HD0201     41.65         89           214           340        mrsA protein (mrsA)
HD0202     41.93        161           334           283        FKBP-type peptidyl-prolyl cis-trans isomerase slyD
                                                               (PPiase)
HD0203     40.71        274 *         416           342        50S ribosomal protein L21
HD0205     39.92        203           506           221        50S ribosomal protein L27
HD0206      34.3         99           247           444        conserved hypothetical protein
HD0207     36.05         68           277           408        conserved hypothetical protein (possible
                                                               phosphoserine phosphatase)
HD0209      40.4        120           432           617        probable competence protein F
HD0210     40.71         98           317           428        ribosomal RNA small subunit methyltransferase C
HD0211     38.27        200           419           561        DNA polymerase III, psi subunit (holD)
HD0212      37.9         72           355           486        ribosomal-protein-alanine acetyltransferase
HD0213     41.01        120           198           395        ATP-dependent RNA helicase protein, srmB
HD0214     41.27         71           288           433        pyridoxamine-5'-phosphate oxidase
HD0215     39.34         58           179           359        heme-binding protein A precursor, dppA
HD0216     38.69        104           440           530        conserved hypothetical protein
HD0217     41.03        107           205           369        tetraacyldisaccharide 4'-kinase (lipid A
                                                               biosynthesis protein)
HD0218     38.66         36           161           296        ATP-dependent Clp protease ATP-binding subunit clpX
HD0221     39.25         90           318           411        ATP-dependent Clp protease proteolytic subunit
                                                               (Endopeptidase Clp)
HD0222     38.17        142           387           500        conserved hypothetical protein
HD0223     39.43         58           329           437        DNA polymerase III, epsilon subunit (dnaQ)
HD0224     41.71         78           317           317        ABC transporter, ATP-binding protein
HD0226     40.55         98           348           285        conserved hypothetical protein
HD0227     35.32         99           404           304        PTS system, glucose-specific IIA component (crr)
HD0228     39.43         83           283           336        phosphoenolpyruvate-protein phosphotransferase
                                                               (ptsI)
HD0229     36.19        265 *         531           413        phosphocarrier protein HPr (histidine-containing
                                                               protein)
HD0230     39.07        140           320           579        thiamin ABC transporter, permease protein
HD0231     40.81         78           416           590        thiamine transport ATP-binding protein
HD0232     37.91        103           244           321        ornithine carbamoyltransferase (OTCase)
HD0233     40.83         51           161           278        carbamoyl-phosphate synthase, large subunit
HD0235     40.43         92           320           397        carbamoyl-phosphate synthase, small subunit
HD0236     35.33        200           777 **        687        hypothetical protein
HD0237     38.28        109           234           396        anaerobic C4-dicarboxylate transporter
HD0238     34.11        309 **        779 **        786 **     hypothetical protein
HD0239     39.83         48           267           407        S-adenosyl-methyltransferase (involved in cell
                                                               envelope biogenesis)
HD0240     35.87        106           386           562        cell division protein L
HD0241     39.59        113           242           454        penicillin-binding protein 3/cell division protein I
HD0242     40.11         81           257           442        UDP-N-acetylmuramyl-tripeptide synthetase
HD0243     40.17         81           268           461        UDP-MurNAc-pentapeptide synthetase
HD0244     38.13        107           218           423        UDP-MurNAc-pentapeptide phosphotransferase
HD0245      40.9         83           264           465        UDP-N-acetylmuramoylalanine--D-glutamate ligase
HD0246     38.19         96           245           534        cell division protein W
HD0247     38.62        139           302           457        hypothetical protein
HD0248     37.79        116           259           341        methionine aminopeptidase
HD0250     35.74         93           362           499        conserved hypothetical protein
HD0251     36.91         84           340           439        phosphoribosylaminoimidazole-succinocarboxamide
                                                               (SAICAR synthase)
HD0252     39.27        190           488           552        phosphoribosylaminoimidazole-succinocarboxamide
                                                               synthase
HD0253      43.4         47           249           372        UDP-N-acetylglucosamine enolpyruvyl transferase
HD0254     37.55        138           395           401        conserved hypothetical protein
HD0255     33.04        154           436           432        conserved hypothetical protein
HD0256     34.08        105           280           256        conserved hypothetical protein; possible ABC
                                                               transporter
HD0257     34.57         93           408           523        conserved hypothetical protein; possible ABC
                                                               transporter
HD0258     40.64        163           329           480        conserved hypothetical protein; possible membrane
                                                               transport protein
HD0259     41.16         71           339           484        ABC transporter ATP binding protein
HD0260     37.29         60           205           284        periplasmic serine protease do/hhoA-like precursor
HD0261     42.28        118           260           461        sugar nucleotide epimerase
HD0262     37.66         62           323           507        arginine repressor
HD0264     43.18         62           312           483        malate dehydrogenase
HD0266     41.19        185           421           361        15 kDa peptidoglycan-associated protein
HD0267     36.01        107           321           468        conserved hypothetical protein
HD0268     37.62         56           194           291        arginyl-tRNA synthetase (argS)
HD0269     41.75         91           226           352        OBG-related GTP-binding protein
HD0270     40.62         77           298           362        tRNA/rRNA methyltransferase
HD0271     36.41         65           206           321        phosphatidylserine synthetase
HD0272     40.53         49           200           288        isoleucyl-tRNA synthetase
HD0273     35.98         59           224           394        riboflavin biosynthesis protein, ribF
HD0274     35.92         80           229           441        nadAB transcriptional regulator
HD0275     32.29        188           537           581        nadAB transcriptional regulator (fragment?)
HD0276     34.85        212           476           479        conserved hypothetical protein
HD0277     40.39        160           379           543        probable phosphoesterase
HD0278      38.1        151           291           438        aerobic respiration control protein
HD0279     35.06        159           315           331        conserved hypothetical protein (possible outer
                                                               membrane protein)
HD0280     26.07 **     248 *         512           534        hypothetical protein
HD0281     36.86        202           439           384        major pilin protein precursor/adhesin B precursor
HD0282     30.72 *      164           366           492        possible fimbrial structural subunit papA
HD0283     35.45         94           217           415        outer membrane usher protein
HD0284     35.09        115           253           373        probable periplasmic fimbrial chaperone stfD
HD0285     33.33        126           447           531        minor fimbrial subunit
HD0286     35.25        223           408           601        hypothetical protein
HD0287     34.61        249 *         469           509        hypothetical protein
HD0288     34.62        171           502           690 *      hypothetical protein
HD0289     34.18         97           381           435        hypothetical protein
HD0290     37.91        179           383           441        transposase (transposase fragment)
HD0291     42.31        122           398           445        transposase
HD0292     32.45        159           476           548        hypothetical protein
HD0293     26.32 **     232           342           410        type IIS restriction enzyme M protein (mod)
HD0294      28.9 **     228           348           439        conserved hypothetical protein
HD0295     39.12        159           492           576        transposase
HD0296     35.77        184           423           585        hypothetical protein
HD0297     40.04         85           330           431        conserved hypothetical protein
HD0298     39.89        110           304           461        conserved hypothetical protein
HD0299     39.34        131           257           300        GTP-binding protein, elongation factor typA/bipA
HD0300     34.47        156           366           404        glutaredoxin
HD0301      43.1         76           341           399        ribonuclease PH (RNase PH)
HD0302     37.96        122           258           409        conserved hypothetical protein
HD0303      37.5         77           253           413        conserved hypothetical protein
HD0304     37.93        308 **        426           440        ferredoxin (fdx-2)
HD0305     36.92        110           357           428        nitrate/nitrite response regulator
HD0306      30.7 *      183           601 *         581        hypothetical protein
HD0307     37.71         47           158           353        possible oxidoreductase
HD0308        35        121           405           490        tRNA/rRNA methyltransferase
HD0310     38.71        122           255           354        transaldolase B, talB
HD0311     32.48        313 **        731 **        764 **     hypothetical protein
HD0312     36.62        162           392           509        dipeptide transport system permease protein dppB
HD0313     38.33         82           298           443        dipeptide transport system permease protein dppC
HD0315      40.9         89           271           392        dipeptide transport ATP-binding protein, dppD
HD0316      39.5         90           242           426        dipeptide transport ATP-binding protein, dppF
HD0317     40.41         39           167           371        transcription accessory protein tex homolog
HD0318     35.16        187           357           387        fimbrial biogenesis and twitching motility protein
HD0319     37.23        125           189           372        conserved hypothetical protein
HD0320     39.24         57           241           326        glutamyl-tRNA synthetase
HD0321     39.88         55           304           318        manganese superoxide dismutase
HD0322     39.83        132           398           410        conserved hypothetical protein
HD0323     36.36        272 *         919 ***      1017 ***    hypothetical protein
HD0324     35.19        196           544           418        conserved hypothetical protein
HD0325      40.1         63           370           437        recombination DNA repair protein, recR
HD0326     40.61        121           412           405        conserved hypothetical protein
HD0327     41.31        148           193           280        energy transducer protein
HD0328     32.56         92           337           404        biopolymer transport protein
HD0329      37.9        116           395           448        biopolymer transport protein, exbB
HD0330     38.74        130           368           522        glpE protein homolog
HD0331     36.29        133           284           415        possible thioredoxin trxA homolog
HD0332     34.29        193           845 ***       857 **     hypothetical protein
HD0333     41.87         76           236           423        thioredoxin reductase
HD0334     41.99         69           323           532        3-deoxy-manno-octulosonate cytidylyltransferase
HD0336     37.04        276 *         867 ***       898 **     hypothetical protein
HD0337     39.42         96           326           474        ribosomal large subunit pseudouridine synthase c
HD0338     37.83        133           413           548        conserved hypothetical protein
HD0339      37.5        210           489           580        conserved hypothetical protein
HD0340     37.96        182           390           397        conserved hypothetical protein
HD0342     41.07        111           389           481        GTP-binding protein
HD0343     39.48        134           401           495        conserved hypothetical protein
HD0344     40.97         81           201           285        formate dependent nitrite reductase, cytochrome
                                                               c552, nrfA
HD0347     40.16        171           317           427        formate dependent nitrite reductase, cytochrome-C
                                                               type protein
HD0349        41        137           398           460        formate dependent nitrite reductase, Fe-S protein/
                                                               anaerobic DMSO reductase B
HD0350     34.58        103           266           387        formate dependent nitrite reductase, transmembrane
                                                               protein, nrfD
HD0351     38.52         67           215           335        peptide chain release factor 3
HD0352     25.81 **     349 **        645 *         680        hypothetical protein
HD0353     37.61        102           293           442        heat shock protein htpX/possible protease
HD0354     40.92         82           243           453        glutathione reductase
HD0356     39.95        124           303           458        possible deoxyribonuclease
HD0357      38.5        129           354           251        probable carbon starvation protein
HD0358     35.77        138           413           434        conserved hypothetical protein
HD0359     34.04        256 *         606 *         544        hypothetical protein
HD0360     34.84        155           235           434        conserved hypothetical protein
HD0361      37.9        155           577           448        translation initiation factor 1 (infA)
HD0362     39.55         72           247           442        conserved hypothetical protein
HD0363     38.91        132           232           344        aspartate semialdehyde dehydrogenase/USG-1 protein
HD0364     39.87         88           325           493        possible transcription regulator
HD0365     39.06        125           518           638        conserved hypothetical protein
HD0366     39.62        166           342           278        flavodoxin
HD0367     34.73        125           343           406        ferric uptake regulation protein
HD0369     38.23         58           161           398        paraquat-inducible protein pqiB homolog
HD0370     36.27         89           278           368        autoinducer-2 production protein luxS
HD0371     30.38 *      100           259           436        conserved hypothetical protein
HD0372     41.14         76           283           422        L-asparaginase II precursor
HD0373      39.8         80           304           366        CTP synthase
HD0374      35.5        132           252           468        conserved hypothetical protein
HD0375     34.58        143           306           504        conserved hypothetical protein (probable
                                                               glycosyltransferase)
HD0376     40.43         60           218           373        conserved hypothetical protein
HD0377     39.52        117           251           366        adenosine deaminase
HD0378     40.33        121           253           389        transformation locus protein orfG homolog
HD0379     40.13         84           235           310        Na+ translocating NADH-quinone reductase subunit A
HD0380     41.93        108           228           317        Na(+)-translocating NADH-quinone reductase subunit B
HD0381      36.3        121           292           316        Na(+)-translocating NADH-quinone reductase subunit C
HD0382     35.74        100           381           274        Na(+)-translocating NADH-quinone reductase subunit D
HD0383     38.02        135           386           409        Na(+)-translocating NADH-quinone reductase subunit E
HD0384     38.54         91           279           271        Na(+)-translocating NADH-quinone reductase subunit F
HD0386     36.77         23           254           416        thiamine biosynthesis lipoprotein precursor
HD0387     32.53        200           441           480        conserved hypothetical protein
HD0388     38.42         83           221           333        ton-dependent heme receptor A
HD0389     39.67         86           234           417        tRNA (5-methylaminomethyl-2-thiouridylate)
                                                               methyltransferase
HD0391     37.83        159           247           384        3-phenylpropionic acid transporter
HD0392     36.66         89           229           421        recombination associated protein rdgC
HD0393     37.49         75           171           325        ribonucleoside-triphosphate reductase
HD0394      40.3        112           318           435        hypothetical protein
HD0396     39.69         65           316           511        electron transport complex protein rnfA
HD0397     38.62        142           235           373        electron transport complex protein rnfB
HD0398     43.48         84           166           342        electron transport complex protein rnfC
HD0400      40.4        105           285           500        electron transport complex protein rnfD
HD0401     36.65         81           317           481        electron transport complex protein rnfG
HD0403     37.87        152           338           505        electron transport complex protein rnfE
HD0404     38.04         83           279           456        lipid A acyltransferase
HD0405     35.33        199           376           397        conserved hypothetical protein (possible periplasmic
                                                               protein)
HD0406     37.76        101           297           439        anthranilate synthase component II/possible para-
                                                               amino benzoate component II
HD0407     35.54         69           187           338        conserved hypothetical protein
HD0408     36.23        102           289           468        para-aminobenzoate synthase component I/possible
                                                               anthranilate synthase component I
HD0409        35        144           329           543        conserved hypothetical protein
HD0410     39.32         64           234           320        recombinase recA
HD0411     33.11        110           318           460        regulatory protein (recX)
HD0412     29.45 **     220           397           426        conserved hypothetical protein
HD0413     36.31        138           337           480        conserved hypothetical protein; possible DNA
                                                               topoisomerase I
HD0414     34.95         95           353           439        conserved hypothetical protein
HD0415     39.23        137           322           464        shikimate 5-dehydrogenase, aroE
HD0417     35.71        231           597 *         636        conserved hypothetical protein
HD0418     36.38        100           280           436        glucose-6-phosphate isomerase
HD0419     35.96        115           217           383        conserved hypothetical protein
HD0420     36.08         99           296           393        DNA adenine methylase
HD0421     38.74        316 **        767 **        773 **     hypothetical protein
HD0422     40.22         85           310           384        3-dehydroquinate synthase
HD0423     39.05        106           326           263        shikimate kinase (shikimic acid kinase I)
HD0424     34.13        301 **        642 *         741 *      hypothetical protein
HD0425     32.67        263 *         654 *         814 **     hypothetical protein
HD0426     38.56         41           169           353        penicillin-binding protein 1A
HD0427     33.12        153           340           480        possible competence protein A homolog
HD0428     38.73        174           602 *         688 *      hypothetical protein
HD0429     24.51 ***    318 **        585           565        hypothetical protein
HD0430     28.89 **     157           611 *         747 *      hypothetical protein
HD0431     32.26        182           553           623        hypothetical protein
HD0432     29.28 **     213           371           473        hypothetical protein (possible comB protein)
HD0433     27.27 **     174           385           506        hypothetical protein
HD0434     31.51 *      103           300           417        competence protein E precursor
HD0435     34.54        186           437           516        N utilization substance protein B (NusB protein)
HD0436     39.54        102           306           447        thiamin-monophosphate kinase, thiL
HD0437     32.73        164           315           486        phosphatidylglycerophosphatase A
HD0438     38.19         66           193           358        tRNA/rRNA methylase
HD0440     39.61         98           346           355        extragenic suppressor protein SuhB
HD0441        39         67           219           398        1-deoxyxylulose-5-phosphate synthase
HD0442     33.33         54           357           464        chorismate mutase/prephenate dehydrogenase
HD0443     38.05        151           392           553        prephenate dehydrogenase
HD0444      38.7         61           253           333        phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP
                                                               synthase)
HD0445     37.44        109           295           365        saccharide biosynthesis regulatory protein
HD0446     40.56         90           255           250        pyruvate kinase II
HD0447     37.98        106           382           561        phosphohistidine phosphatase sixA
HD0448     38.42         71           243           406        conserved hypothetical protein
HD0449     37.71        184           572           423        DNA-binding protein fis
HD0450     35.47        110           242           367        N-acetylmuramoyl-L-alanine amidase II
HD0451     41.92        139           365           529        conserved hypothetical protein
HD0452     35.33         97           350           416        oligoribonuclease
HD0453     38.68         58           314           494        phosphopantetheine adenylyltransferase
HD0454     39.49         89           278           405        3-deoxy-D-manno-octulosonic-acid transferase
HD0455     37.75         84           242           353        collagenase prtC homolog, possible protease
HD0457     31.06 *      222           315           383        soluble cytochrome b562 precursor (Cytochrome b-562)
HD0458     33.33        206           668 *         760 **     hypothetical protein
HD0459     35.02        104           228           460        conserved hypothetical protein
HD0460     42.55        129           669 *         736 *      hypothetical protein
HD0461     42.11         97           262           537        possible amino-acid transporter
HD0463     33.33        460 ****      997 ****     1131 ****   hypothetical protein
HD0464     40.81         95           316           572        aminotransferase nifS protein
HD0465     40.21         94           252           409        6-phosphofructokinase
HD0466     32.12 *      110           273           436        N-acetylglucosamine glycosyltransferase
HD0467     36.43        152           328           553        conserved hypothetical protein
HD0469     40.18         77           289           359        large subunit pseudouridylate synthase D
HD0470     33.59        110           289           353        lipooligosaccharide galactosyltransferase II (comL
                                                               related)
HD0471     40.11         70           285           376        sialylglycoprotease
HD0472     24.79 ***    171           387           481        galactosyltransferase II
HD0473     38.56        192           417           524        cyaY protein
HD0475     37.76         67           176           390        ATP-dependent DNA helicase
HD0477     38.25         83           325           201        enolase/ 2-phosphoglycerate dehydratase
HD0478     37.38         90           356           474        RNA methyltransferase (trmA family)
HD0479     37.13        146           420           477        conserved hypothetical protein (possible DNA-binding
                                                               protein)
HD0480     34.47        218           499           496        conserved hypothetical protein
HD0481     43.79        103           289           452        phage transposase
HD0482     42.31        146           326           479        phage transposase
HD0483     29.22 **     158           491           433        hypothetical protein
HD0484     40.55        157           380           493        possible phage transposase
HD0485     44.02        118           568           629        phage transposase
HD0486     45.41 *      179           535           709 *      hypothetical protein
HD0488     39.71        150           441           542        conserved hypothetical protein
HD0489     44.17        104           419           545        conserved hypothetical protein
HD0490     39.76        177           484           557        conserved hypothetical protein
HD0492     42.22        308 **        665 *         732 *      conserved hypothetical protein
HD0493     34.68        185           458           534        hypothetical protein
HD0494     38.24        293 **        590           627        hypothetical protein
HD0495     35.84        109           455           490        hypothetical protein
HD0496        40        128           427           561        conserved hypothetical protein
HD0497     44.06        147           530           694 *      conserved hypothetical protein
HD0498     43.67        174           402           530        phage anti-repressor protein
HD0499     42.38        204           593           665        hypothetical protein
HD0500     43.12        127           447           706 *      conserved hypothetical protein
HD0501      43.4         89           418           495        N-acetylmuramoyl-L-alanine amidase-like protein
HD0502     33.62        140           360           557        hypothetical protein
HD0503     41.45        146           543           701 *      conserved hypothetical protein
HD0504     43.59        164           502           547        hypothetical protein
HD0506     34.05        190           375           489        hypothetical protein
HD0507     35.69        175           487           436        hypothetical protein
HD0509     41.72        168           389           466        conserved hypothetical protein (possible DNA-binding
                                                               protein)
HD0510     41.67        249 *         633 *         618        hypothetical protein
HD0511     43.71         70           416           537        conserved hypothetical protein
HD0512      44.3         87           311           470        conserved hypothetical protein
HD0514     43.16         57           248           459        conserved hypothetical protein
HD0515     42.03         70           296           535        conserved hypothetical protein
HD0516     35.59        241           617 *         742 *      hypothetical protein
HD0517     44.85        133           517           612        G protein (muG-2)
HD0518     45.21         94           323           486        bacteriophage Mu protein GP32
HD0519     43.61         88           362           476        bacteriophage mu T protein homolog
HD0520     40.63        162           570           609        hypothetical protein
HD0521     38.76        143           384           521        conserved hypothetical protein
HD0522     42.06        120           508           614        conserved hypothetical protein
HD0523     40.73        135           388           460        conserved hypothetical protein
HD0525     42.62        144           444           563        conserved hypothetical protein
HD0526     43.53        121           476           661        hypothetical protein
HD0527     46.71 *      115           243           478        tail length tape measure protein
HD0529     45.05         76           343           460        hypothetical protein
HD0530     42.89        122           309           487        hypothetical protein
HD0531     45.36 *      139           394           562        hypothetical protein
HD0532      46.1 *      148           394           590        conserved hypothetical protein
HD0533     45.52 *      155           438           619        hypothetical protein
HD0534     44.24        244 *         696 **        747 *      hypothetical protein
HD0535     48.81 **     143           455           565        hypothetical protein
HD0536     45.59 *      239           568           591        hypothetical protein
HD0538     43.15         67           230           421        conserved hypothetical protein
HD0539     41.11        222           584           686        hypothetical protein
HD0540     24.32 ***    438 ****      573           567        hypothetical protein
HD0541     35.23        156           348           467        RNA methyltransferase
HD0542     38.57         79           175           334        beta-hexosaminidase
HD0544     40.38        110           319           448        DNA mismatch repair protein
HD0545     39.78        121           289           380        probable LexA repressor
HD0546     38.01         61           214           389        glycerol-3-phosphate acyltransferase protein
HD0548     43.57         65           269           467        phosphoribosylglycinamide formyltransferase
HD0551     40.55         52           178           354        DNA polymerase III alpha subunit protein, dnaE
HD0552     38.97         61           303           405        conserved hypothetical protein
HD0553     38.77         69           293           466        conserved hypothetical protein
HD0554     30.77 *      209           599 *         695 *      hypothetical protein
HD0555     40.73         96           231           411        aminopeptidase A/I (pepA) (leucyl aminopeptidase)
                                                               (cytosol aminopeptidase)
HD0556     35.71         60           285           462        possible coenzyme PQQ
HD0557     35.93        130           366           360        6-pyruvoyl-tetrahydropterin synthase
HD0558     37.93         82           264           377        conserved hypothetical protein
HD0559      40.4        222           665 *         696 *      hypothetical protein
HD0560     36.02        241           514           715 *      hypothetical protein
HD0561     42.65         81           254           369        phosphoribosylformylglycinamidine cyclo-ligase
HD0563      31.6 *      232           435           475        conserved hypothetical protein
HD0564     38.38         59           233           409        aspartate ammonia-lyase
HD0565      39.4         49           240           352        ATP-dependent Clp protease, ATPase subunit (clpB)
HD0566     41.06         76           245           436        acetylornithine deacetylase
HD0567     35.42        305 **        895 ***       969 ***    hypothetical protein
HD0568     38.97        124           253           414        possible arginine/ornithine antiporter protein
HD0569        41         61           223           304        S-adenosylmethionine synthase, metX
HD0570     38.91        137           341           522        conserved hypothetical protein
HD0571     36.67         81           197           329        ATP-dependent DNA helicase (rep)
HD0572     37.72        115           296           375        spermidine / putrescine transport ATP-binding
HD0573     34.34         81           281           466        spermidine / putrescine transport system permease
HD0574     33.33         81           298           436        spermidine / putrescine transport system permease
HD0575      39.3         66           276           370        peptide chain release factor 2 (RF-2)
HD0577     41.26        109           248           445        selenophosphate synthase
HD0578     41.78        178           411           649        2-octaprenyl-6-methoxyphenol 4-monoxygenase
HD0579      39.7        156           310           480        2-octaprenyl-6-methoxyphenol hydroxylase
HD0580     33.49        254 *         393           265        lipoprotein 27 kDa
HD0581     33.95        310 **        309           324        lipoprotein, 27 kDa protein
HD0582     38.41        103           296           421        probable monoxygenase, visC homolog
HD0584     39.24        114           319           454        conserved hypothetical protein
HD0585     36.76         94           371           459        nitrogen regulatory IIA homolog, ptsN
HD0586     39.12         84           277           420        ABC transporter ATP-binding protein
HD0587     35.32        103           322           513        conserved hypothetical protein
HD0588      35.4        115           317           384        conserved hypothetical protein
HD0589     39.69        128           297           463        conserved hypothetical protein
HD0590     37.56        118           337           468        conserved hypothetical protein
HD0591     36.92        126           406           456        P70 protein (possible lemA protein homolog)
HD0592     27.66 **     317 **        632 *         580        hypothetical protein
HD0593     40.41         91           340           479        crossover junction endodeoxyribonuclease
HD0595     36.89        139           365           269        conserved hypothetical protein
HD0596     40.89         84           342           303        conserved hypothetical protein
HD0597        30 *      348 **        620 *         786 **     hypothetical protein
HD0598     35.48        145           352           476        datP pyrophosphohydrolase, ntpA
HD0599     40.23         63           238           299        aspartyl-tRNA synthetase, aspS
HD0600     39.51        126           256           387        conserved hypothetical protein
HD0601     37.87         74           264           460        thiamin ABC transporter, periplasmic-binding protein
                                                               (tbpA)
HD0602     28.76 **     287 **        661 *         782 **     hypothetical protein
HD0603     39.78        136           391           356        dnaK suppressor protein (dksA)
HD0604      38.3         67           215           388        poly(A) polymerase (pcnB)
HD0605     39.02        111           454           621        7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
HD0606     33.33        261 *         492           581        hypothetical protein
HD0607     36.21         81           196           407        conserved hypothetical protein
HD0608      32.1 *      248 *         545           587        hypothetical protein
HD0609     33.33        162           305           392        hypothetical protein
HD0610     38.48        171           352           481        lactoylglutathione lyase
HD0611     39.22         85           360           523        ribonuclease T (Exoribonuclease T) (RNase T)
HD0612     42.12         75           280           324        3-oxoacyl-[acyl-carrier-protein] synthase I
HD0613     34.09         62           191           416        adenylate cyclase
HD0614     38.76         79           202           377        glutathione-regulated potassium-efflux system
HD0615     38.61        103           199           485        cytochrome c-type biogenesis protein
HD0616     37.16        123           287           496        thiol:disulfide interchange protein
HD0617     36.84         82           506           627        cytochrome c-type biogenesis protein
HD0619     36.41         83           314           423        cytochrome c-type biogenesis protein
HD0620     37.52        121           373           404        conserved hypothetical protein
HD0621     37.35        131           221           315        probable menaquinone-specific isochorismate
HD0622     34.92        158           621 *         740 *      hypothetical protein
HD0623     39.28         60           232           468        primosomal protein N' (priA)
HD0624     41.87         56           206           408        alanine racemase
HD0625     29.03 **     261 *         732 **        772 **     hypothetical protein
HD0626     36.36         51           223           357        exodeoxyribonuclease V, alpha subunit
HD0627     33.33        337 **        786 **        844 **     hypothetical protein
HD0629     33.98        114           404           576        paraquat-inducible protein PqiA homolog
HD0630     40.36         93           263           327        2,3,4,5-tetrahydropyridine-2-carboxylate
HD0631     38.84        140           415           474        probable arsenate reductase
HD0632     33.79        144           360           473        probable 3-dehydroquinate dehydratase
HD0634      42.7        169           329           324        biotin carboxyl carrier protein
HD0635     40.48         63           304           360        biotin carboxylase (subunit of acetyl-CoA
                                                               carboxylase)
HD0636     37.78         77           254           404        molybdopterin-guanine dinucleotide biosynthesis
                                                               protein
HD0637     31.48 *      195           470           519        conserved hypothetical protein
HD0638     32.39        145           304           422        periplasmic oxidoreductase (por) (Thiol:disulfide
                                                               interchange protein dsbA precursor.)
HD0639     40.19        118           290           408        possible cell division protein N
HD0640     43.25         76           343           467        conserved hypothetical protein
HD0641     40.38        119           356           460        D,D-carboxypeptidase-related protein
HD0642     41.91         86           262           433        succinyl-diaminopimelate desuccinylase, dapE
HD0643     35.59        114           347           459        conserved hypothetical protein
HD0644     41.25        106           347           462        dihydropteroate synthase
HD0645     41.33         93           270           428        ribosomal large subunit pseudouridine synthase
HD0646     36.46         76           167           349        conserved hypothetical protein
HD0647     34.78         95           234           390        conserved hypothetical protein
HD0648     36.83        102           243           375        tryptophan-specific transport protein
HD0649     38.37         71           280           302        phosphatidylserine decarboxylase proenzyme
HD0650     35.56        127           375           432        conserved hypothetical protein
HD0651     37.07        123           247           343        opacity associated protein A
HD0652     36.69        139           373           492        opacity associated protein B
HD0653     40.95         90           394           512        ADP-heptose--LPS heptosyltransferase II
HD0654     29.63 **     184           445           535        hypothetical protein
HD0655     43.47        275 *         551           380        30S ribosomal protein S12 (streptomycin resistance
                                                               protein)
HD0656     40.63        172           481           238        30S ribosomal protein S7
HD0657     40.84        133           410           155        elongation factor G
HD0658     42.36        190           538           289        elongation factor Tu, tufB
HD0659     43.38         80           335           489        serine acetyltransferase
HD0660     42.14         91           383           464        glycerol-3-phosphate dehydrogenase
HD0661      36.8        168           395           356        protein-export protein
HD0662     36.24        122           359           491        conserved hypothetical protein
HD0663      38.4        118           335           235        trigger factor
HD0664     31.37 *      222           641 *         710 *      hypothetical protein
HD0665     36.04        100           421           380        conserved hypothetical protein
HD0667     40.91        108           319           444        DNA polymerase III, chi subunit
HD0668     26.69 **     180           351           432        conserved hypothetical protein
HD0669     40.78         49           206           327        valyl-tRNA synthetase, valS
HD0671     39.99        107           196           420        sodium- pantothenate symporter (pantothenate
                                                               permease)
HD0673     32.53        209           460           497        conserved hypothetical protein
HD0675     39.31        113           511           533        met repressor
HD0677     37.95        105           272           399        lipoprotein precursor, vacJ
HD0678     39.07         78           230           454        site-specific recombinase
HD0680     37.17        114           321           329        conserved hypothetical protein (possible periplasmic
                                                               protein)
HD0681     37.25        316 **        665 *         655        hypothetical protein
HD0682     42.04        102           247           421        conserved hypothetical protein
HD0683     38.61        122           316           569        1,4-dihydroxy-2-naphthoate octaprenyltransferase
HD0684     39.13        105           387           382        conserved hypothetical protein
HD0685     37.83        139           289           484        cytidine 5'monophosphate N-acetylneuraminic acid
HD0686     30.52 *      123           307           486        lipooligosaccharide sialyltransferase
HD0687      39.3        101           239           461        dTDP-D-glucose 4,6-dehydratase
HD0688      40.2         97           348           485        glucose-1-phosphate thymidyltransferase
HD0689     38.89        273 *         606 *         386        30S ribosomal protein S21
HD0690     42.18         67           210           467        DNA primase
HD0691     40.02        125           216           322        RNA polymerase sigma factor sigma-70
HD0693     39.26         74           315           310        tyrosyl-tRNA synthetase, tyrS
HD0694     34.15        151           667 *         806 **     hypothetical protein
HD0695     40.16         84           226           377        ribonuclease r, virulence associated protein
HD0697     36.99        123           396           429        thioredoxin
HD0698     41.79         98           286           468        transcriptional regulator (possible Bm3R1-related
                                                               protein)
HD0699     38.81        102           219           396        hydrogen peroxide-inducible activator
HD0700     39.32        115           406           241        peroxiredoxin 2 family protein/glutaredoxin
HD0702      39.2         90           314           422        fructose-1,6-bisphosphatase
HD0703      41.3        110           291           519        UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-
                                                               medo-diaminopimelate
HD0704     30.73 *      203           547           630        hypothetical protein
HD0705     40.76        167           221           390        octaprenyl-diphosphate synthase
HD0706     37.87         79           267           393        conserved hypothetical protein
HD0707     42.84        101           256           378        malonyl coA-acyl carrier protein transacylase
HD0708     40.79        105           294           370        3-oxoacyl-(acyl-carrier-protein) reductase/short-
                                                               chain alcohol dehydrogenase
HD0709      36.4        114           221           392        branched-chain amino acid carrier protein, brnQ
HD0710     40.36         76           212           354        formamidopyrimidine-DNA glycosylase (fpg)
HD0713     34.44        187           398           369        conserved hypothetical protein (possible dnaJ-family
                                                               protein)
HD0714     38.13        118           284           413        sec-independent protein translocase protein
HD0715     38.04        150           376           456        sec-independent protein translocase, tatB protein
HD0716     35.11        170           470           451        sec-independent protein translocase, tatA
HD0717        38         67           264           347        ubiquinone biosynthesis protein
HD0718     36.78         65           308           411        conserved hypothetical protein
HD0719     38.97         49           305           511        ubiquinone/menaquinone biosynthesis
HD0720     30.39 *      254 *         701 **        695 *      hypothetical protein
HD0721     38.26        157           262           367        magnesium and cobalt transport protein, corA
HD0723     39.82         62           300           455        tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-
                                                               methyltransferase)
HD0725     42.64        157           396           412        conserved hypothetical protein
HD0726     40.04         85           235           305        L-2,4-diaminobutyrate decarboxylase
HD0727      37.5        280 **        769 **        852 **     hypothetical protein
HD0729     41.47         50           249           297        diaminobutyrate--2-oxoglutarate aminotransferase
HD0730     30.41 *      265 *         594           415        50S ribosomal protein L33
HD0731     41.77        184           533           417        50S ribosomal protein L28
HD0732     38.69         91           379           478        DNA repair protein, radC
HD0733        40        105           292           452        DNA/pantothenate metabolism flavoprotein
HD0734     39.87        194           430           555        deoxyuridine 5'-triphosphate
HD0735     36.29        120           281           427        Ttk protein
HD0737     34.25        207           528           554        conserved hypothetical protein
HD0738     38.45         88           312           441        cyclic AMP receptor protein
HD0740        40         58           264           405        GTP-binding protein, hflX
HD0741     35.62        171           476           391        host factor-I protein
HD0742     42.04         58           254           361        tRNA delta(2)-isopentenylpyrophosphate transferase
HD0743     42.35         76           246           430        DNA mismatch repair protein, mutL
HD0744     36.71        132           270           530        ribonuclease BN
HD0745     41.16        113           327           464        conserved hypothetical protein
HD0746     41.85        148           325           461        conserved hypothetical protein (possible endo-1,4-
                                                               beta-xylanase A precursor)
HD0747     39.15        112           270           429        Na+/H+ antiporter 1 (exchanging protein), nhaA
HD0748     39.27        101           340           482        conserved hypothetical protein
HD0749     39.49         87           256           475        lacZ expression regulator
HD0750     38.71         98           251           321        glutamine synthetase
HD0751     47.47 *      208           741 **        782 **     hypothetical protein
HD0752     40.05        154           482           584        ribonuclease P protein component, rnpA
HD0753     42.22        373 ***       749 **        417        50S ribosomal protein L34
HD0754     32.35        243           779 **        699 *      hypothetical protein
HD0755     41.11        153           260           438        outer membrane antigenic lipoprotein b precursor
HD0756     39.55        156           317           318        possible outer membrane antigenic lipoprotein B
HD0757     40.68        165           357           550        conserved hypothetical protein
HD0758      43.7         91           348           559        stationary-phase survival protein, surE
HD0759     41.83        150           353           579        conserved hypothetical protein
HD0760     40.24        154           407           563        conserved hypothetical protein
HD0762     44.75        135           474           537        triosephosphate isomerase
HD0765     41.65         82           368           556        mannose-6-phosphate isomerase
HD0766     45.07        115           395           578        mannose-specific phosphotransferase system IID
HD0767     46.32 *      119           461           713 *      mannose-specific phosphotransferase system IIC
HD0768     44.34        116           366           593        mannose-specific phosphotransferase element
HD0769     37.08        119           330           432        serum resistance protein (weakly similar to yopA)
HD0770     42.03         97           540           664        conserved hypothetical protein (possible hemolysin)
HD0771     42.67        133           391           524        conserved hypothetical protein
HD0772     42.11        376 ***       572           351        50S ribosomal protein L32
HD0773     45.16        113           496           716 *      fatty acid/phospholipid synthesis protein plsX
HD0774     47.42 *      102           474           702 *      3-oxoacyl-[acyl-carrier-protein] synthase III
HD0775      43.2        119           474           656        conserved hypothetical protein
HD0776     39.77        163           495           486        conserved hypothetical protein
HD0777     39.14        129           396           612        conserved hypothetical protein
HD0778     43.88        183           712 **        860 **     conserved hypothetical protein
HD0779     42.24        124           481           449        cytochrome c peroxidase
HD0780     44.17        116           470           513        probable cytochrome c peroxidase
HD0781     36.42         98           483           493        alkylphosphonate uptake protein
HD0782     44.95        147           374           513        oxaloacetate decarboxylase beta chain
HD0783     40.81         52           161           309        oxaloacetate decarboxylase alpha chain
HD0784     39.92         69           374           515        oxaloacetate decarboxylase gamma chain
HD0785     32.07 *      104           332           518        conserved hypothetical protein
HD0786     38.86        113           387           547        heme exporter protein A
HD0787     40.12        139           414           559        heme exporter protein B (ccmB)
HD0789      39.3        189           324           445        heme exporter protein C (ccmC)
HD0790     32.35        176           531           618        heme exporter protein D (ccmD)
HD0791     39.74         97           352           488        cytochrome c-type biogenesis protein
HD0792     39.25         68           260           523        cytochrome c-type biogenesis protein, ccmF
HD0793     41.69        135           291           483        transport system permease protein
HD0794     31.37 *      231           542           646        hypothetical protein
HD0795     39.05         78           202           432        thiosulfate sulfur transferase
HD0796      36.5         97           247           353        oxidoreductase
HD0797     38.38        112           370           523        probable oxidoreductase
HD0798     38.13         66           196           426        conserved hypothetical protein, possible transporter
HD0799     31.16 *      282 **        541           758 *      hypothetical protein
HD0800     38.75        110           319           477        probable hemolysin , Hly-like
HD0801     38.49        132           342           478        conserved hypothetical protein
HD0802     40.42        125           432           586        conserved hypothetical protein
HD0803     37.67         49           210           351        LppC
HD0804      39.2        102           286           488        conserved hypothetical protein
HD0805     34.33        150           259           341        conserved hypothetical protein
HD0806     41.75        164           387           541        conserved hypothetical protein
HD0807     38.85        136           229           382        thiol:disulfide interchange protein, dsbD; inner
HD0809     31.62 *      324 **        574           647        hypothetical protein
HD0810     38.55         89           239           377        conserved hypothetical protein
HD0811     38.64         87           310           468        arginine ABC transporter, ATP-binding protein (artP)
HD0812        35        130           281           443        arginine ABC transporter, periplasmic-binding
                                                               protein (artI)
HD0813     39.64         97           315           537        arginine ABC transporter, permease protein (artQ)
HD0814     37.13        130           331           556        arginine transport system permease protein artM
HD0815     36.81         46           193           391        DNA repair protein recN
HD0816     34.96         84           289           369        UDP-3-O-acyl-GlcNAc deacetylase
HD0817     42.15        112           333           289        cell division tubulin-like protein Z
HD0818     38.17         80           300           356        cell division protein A
HD0820      35.1        138           283           456        cell division protein Q
HD0821     38.27         91           306           324        D-alanine-D-alanine ligase B
HD0823     40.41         70           197           324        UDP-N-acetylmuramate-alanine ligase
HD0824     41.29        134           284           385        UDP-N-acetylglucosamine-N-acetylmuramyl-
                                                               (pentapeptide)
HD0826     40.43         88           376           351        adenylate kinase
HD0827     39.33        121           214           402        conserved hypothetical protein
HD0829     40.81        104           287           450        UDP-glucose-4-epimerase
HD0830     41.44         36           212           408        DNA ligase (polydeoxyribonucleotide synthase)
HD0831      39.6         73           275           489        cell division protein
HD0832     35.25        117           267           431        cysteine synthetase
HD0833     39.86         42           264           285        6-phosphogluconate dehydrogenase
HD0835     38.16        137           169           351        transport protein
HD0836     39.32         85           262           378        6-phosphogluconolactonase
HD0838     38.84         83           233           310        glucose-6-phosphate dehydrogenase
HD0840     40.22         84           338           530        sulphite synthesis pathway protein cysQ homolog
HD0841     37.18        125           302           410        ADP compounds hydrolase nudE
HD0842     44.21        110           436           588        ribosome associated heat shock protein 15 homolog
HD0843     39.15         78           225           340        chaperonin heat shock protein 33 homolog
HD0845      37.6         89           228           379        possible secreted protease SohB
HD0846     40.15         75           206           355        lipid-A-disaccharide synthase
HD0847     40.48         71           259           361        aspartate semialdehyde dehydrogenase
HD0848      40.5        182           358           299        superoxide dismutase [Cu-Zn] precursor
HD0849     37.21         62           230           320        RecF protein
HD0850     39.13         88           299           395        DNA polymerase III beta chain, dnaN
HD0851      36.9         97           173           321        chromosomal replication initiator protein, dnaA
HD0852     35.39         60           175           395        conserved hypothetical protein
HD0853     40.26        112           234           314        peptide chain release factor 1 (RF-1)
HD0855     38.83        105           275           430        protoporphyrinogen oxidase
HD0856     37.49        112           255           379        conserved hypothetical protein (possible
                                                               transcriptional regulator)
HD0857     39.14         96           250           421        2-dehydro-3-deoxyphosphooctonate aldolase
HD0858     38.19         53           270           466        lipoprotein releasing system transmembrane
HD0860     40.53         61           329           501        ABC transporter, ATP-binding protein (lipoprotein
                                                               releasing system ATP-binding protein lolD) ;
                                                               possible heterocyst maturation protein (devA)
HD0861     37.72         86           270           470        lipoprotein releasing system transmembrane
HD0863     34.47         78           304           434        peptide transport system ATP-binding protein
HD0864     39.46         68           254           304        fructose-bisphosphate aldolase class II
HD0865      40.9         80           250           322        phosphoglycerate kinase
HD0866     39.53         75           264           410        sodium/sulphate transporter
HD0868     38.89        150           405           621        hypothetical protein
HD0869     30.63 *      247 *         586           643        hypothetical protein
HD0870     40.06         47           224           384        DNA topoisomerase IV subunit B (gyrase B)
HD0872     36.31        346 **        476           522        hypothetical protein
HD0873     34.45         91           231           316        P-protein (chorismate mutase/prephenate dehydratase)
HD0874     37.92        100           190           313        NADH dehydrogenase
HD0875     38.32        101           311           475        protein sprT
HD0876     37.74        110           297           355        conserved hypothetical protein
HD0877     36.94        248 *         799 **        840 **     hypothetical protein
HD0878     37.16         63           188           389        protease IV, signal peptide peptidase sppA
HD0879     39.47        141           341           488        conserved hypothetical protein
HD0880     40.24         69           312           441        possible dehydrogenase
HD0881     37.22        120           295           465        conserved hypothetical protein
HD0882     33.25        114           271           527        lsg locus protein 1
HD0883     37.74        102           295           499        lsg-4 lipopolysaccharide biosynthesis protein
HD0884     31.56 *      138           220           470        conserved hypothetical protein (part of lsg locus ?)
HD0885     36.85         93           275           525        glycosyltransferase
HD0886      39.2         61           249           480        glycosyltransferase, part of the lsg locus
HD0887     39.32        122           253           303        nucleoside transporter
HD0888     39.25        103           269           353        deoxyribose-phosphate aldolase
HD0889     38.49        102           259           281        purine nucleoside phosphorylase
HD0890     39.79         79           254           407        N-acetyl-gamma-glutamyl-phosphate reductase
HD0891     38.36        131           272           437        acetylglutamate kinase
HD0892     39.83         79           218           388        acetylornithine aminotransferase, argD
HD0895     39.11        116           287           223        transcription termination factor (rho)
HD0896     40.48         58           283           375        cysteine synthase (O-acetylserine sulfhydrylase)
HD0897     32.05 *      158           454           516        integrase / recombinase
HD0898     31.88 *      186           342           416        conserved hypothetical protein
HD0899        39        135           392           440        conserved hypothetical protein
HD0900     38.99        176           375           495        conserved hypothetical protein
HD0901     37.04        165           542           636        hypothetical protein
HD0902     37.33        181           373           480        cytolethal distending toxin protein A
HD0903     41.31         96           291           395        cytolethal distending toxin protein B
HD0904     37.59        117           328           465        cytolethal distending toxin protein C
HD0905     38.23        206           571           663        IstB C-terminal homolog
HD0906     32.67        140           527           571        hypothetical protein
HD0907     33.85        182           429           523        conserved hypothetical protein
HD0908     36.92        103           332           448        transposon gamma-delta resolvase (Tn 1000 resolvase)
HD0909     30.46 *      172           400           548        hypothetical protein
HD0910     33.53        257 *         457           478        conserved hypothetical protein
HD0911     33.33        257 *         505           566        conserved hypothetical protein
HD0912     33.55        111           457           577        hypothetical protein
HD0913     37.11        118           344           505        conserved hypothetical protein
HD0914     40.97        150           375           520        possible type I restriction enzyme M protein
HD0915     38.61        148           361           518        hypothetical protein
HD0917     39.35        137           261           436        possible antirestriction enzyme
HD0918     35.44        161           388           451        Haemophilus-specific protein
HD0919     43.07        184           570           626        hypothetical protein
HD0920     40.35        242           470           572        Haemophilus-specific protein
HD0921     45.36 *      114           344           474        conserved hypothetical protein
HD0922     42.79        103           309           486        conserved hypothetical protein
HD0923     39.94        151           431           547        conserved hypothetical protein
HD0924     42.86        154           415           489        hypothetical protein
HD0925     37.12        301 **        733 **        781 **     hypothetical protein
HD0926     41.44        150           556           741 *      conserved hypothetical protein
HD0927     43.06        227           653 *         794 **     Haemophilus-specific protein
HD0928     44.65         94           429           590        conserved hypothetical protein
HD0930     42.11         85           539           717 *      hypothetical protein
HD0931     42.37         93           458           670        Haemophilus-specific protein
HD0932     44.02        123           422           561        conserved hypothetical protein
HD0933     45.08        126           351           553        conserved hypothetical protein
HD0934     47.14 *      161           528           735 *      conserved hypothetical protein
HD0935     45.99 *      154           417           548        conserved hypothetical protein
HD0936     44.95         98           333           540        conserved hypothetical protein
HD0937     40.94        191           434           619        conserved hypothetical protein
HD0938     42.67        131           465           617        conserved hypothetical protein
HD0939     39.49        227           446           491        Haemophilus-specific protein
HD0940     48.01 **      80           599 *         790 **     conserved hypothetical protein
HD0941     43.23        155           520           660        conserved hypothetical protein
HD0942      36.7        199           475           579        Haemophilus-specific protein
HD0943     40.83        317 **        421           538        Haemophilus-specific protein
HD0944     42.69        110           417           590        hypothetical protein
HD0945     39.67        158           390           484        DNA repair protein (radC)
HD0946     38.85        126           520           726 *      hypothetical protein
HD0947     45.04        117           590           723 *      Haemophilus-specific protein
HD0948     31.52 *      319 **        525           516        hypothetical protein
HD0950     43.21        174           574           712 *      hypothetical protein
HD0951     39.24        195           317           399        conserved hypothetical protein
HD0952     35.65        240           634 *         535        hypothetical protein
HD0953     39.09        140           491           572        hypothetical protein
HD0954     43.32         92           323           507        topoisomerase I
HD0955     36.87        129           490           600        conserved hypothetical protein
HD0956     35.15        175           386           568        conserved hypothetical protein
HD0957     32.09 *      189           388           429        hypothetical protein
HD0958     35.86        145           461           592        Haemophilus-specific protein
HD0959      40.4        246 *         820 ***       827 **     hypothetical protein
HD0960     37.75        181           390           459        hypothetical protein
HD0961     38.49         85           408           569        Haemophilus-specific protein
HD0962     42.93        112           548           656        single-stranded DNA-binding protein
HD0963     30.92 *      221           479           540        hypothetical protein
HD0964     30.67 *      231           537           694 *      hypothetical protein
HD0965     40.86        176           713 **        674        hypothetical protein
HD0966     46.88 *      125           525           629        conserved hypothetical protein
HD0967     43.12        140           460           653        Haemophilus-specific protein
HD0968     40.76        116           433           580        conserved hypothetical protein
HD0969     42.65        175           457           590        conserved hypothetical protein
HD0970      47.5 *      156           485           682        Haemophilus-specific protein
HD0971     38.89        137           467           621        conserved hypothetical protein
HD0972     41.35        133           545           679        Haemophilus-specific protein
HD0973     43.36        111           373           487        replicative DNA helicase, dnaB
HD0974     40.41        102           406           469        possible chromosome partitioning protein
HD0975     38.73         58           238           350        transcription repair coupling factor
HD0976     37.47         67           201           357        aminopeptidase N protein, pepN
HD0977      41.5        104           302           536        conserved hypothetical protein
HD0978      37.9        185           386           510        dihydroneopterin aldolase
HD0979     41.67        142           277           464        cytidine deaminase
HD0981     38.13         60           248           455        cell division protein X / probable ABC system
                                                               permease
HD0982     38.53        109           273           351        cell division protein E, ABC system ATP-binding
                                                               protein
HD0984     37.69        110           189           311        cell division protein Y (GTP-binding signal
                                                               recognition particle)
HD0985     39.39        110           384           552        conserved hypothetical protein
HD0986     38.58        191           383           430        conserved hypothetical protein
HD0987     37.65        119           354           480        4-hydroxyphenylacetic acid hydroxylase
HD0988     40.82         63           294           327        oligopeptidase A
HD0989     39.32         73           310           389        pyruvate formate-lyase activating enzyme
HD0990     40.34         96           280           272        formate acetyltransferase
HD0991     37.82        165           256           314        formate transporter
HD0992     37.32        135           422           622        conserved hypothetical protein
HD0993     27.96 **     354 ***       704 **        837 **     hypothetical protein
HD0994     34.86        160           249           399        spermidine / putrescine-binding periplasmic protein
HD0995     40.29         76           258           409        GTP-binding protein
HD0996      39.3        125           306           477        peptidyl-tRNA hydrolase
HD0997     31.37 *      294 **        603 *         681        hypothetical protein
HD0998     40.91        116           214           375        uracil permease (uraA)
HD0999     40.35         88           175           312        sodium / proline symporter, (proline permease)
HD1000     27.45 **     174           502           583        hypothetical protein
HD1001     33.09        149           356           456        conserved hypothetical protein
HD1002     36.59        174           341           386        conserved hypothetical protein
HD1003     34.69         99           360           541        conserved hypothetical protein
HD1004     39.56        182           347           340        DNA-binding protein HU-ALPHA
HD1005     36.97         82           225           359        thymidylate synthase
HD1006     32.28        121           285           411        conserved hypothetical protein
HD1007      40.3         84           241           372        biotin synthetase
HD1008     35.71        297 **        649 *         503        cold shock-like protein cspC
HD1009     38.25        181           368           381        possible prop effector homolog
HD1010     35.56         79           154           330        tail specific protease precursor
HD1011     31.25 *      182           585           748 *      hypothetical protein
HD1012      25.4 ***    277 *         640 *         718 *      hypothetical protein
HD1013     35.93        156           565           644        conserved hypothetical protein
HD1014     31.22 *      294 **        394           422        hypothetical protein
HD1015     33.33        184           615 *         637        conserved hypothetical protein
HD1016     37.41        230           658 *         789 **     hypothetical protein
HD1017     32.87        173           310           395        conserved hypothetical protein
HD1018     35.55        160           356           503        membrane fusion protein
HD1019     34.91        100           264           450        macrolide-specific ABC-type efflux carrier
HD1020      37.3        128           341           520        glyoxalase II family protein
HD1021     37.76        133           225           392        possible licA protein
HD1022     38.76        197           433           582        hypothetical protein
HD1023     36.91        118           414           453        histidine triad protein homolog
HD1024     37.06         85           257           415        iron (chelated) ABC transporter, permease protein
HD1025     38.81        120           267           443        iron (chelated) ABC transporter, permease protein
HD1026     40.24         74           312           434        ribonuclease HII (RNase HII)
HD1027     40.04         82           235           382        conserved hypothetical protein
HD1028     35.57         71           267           365        glycine cleavage system transcriptional activator
HD1029     36.68         98           349           524        conserved hypothetical protein (haloacid
                                                               dehalogenase/epoxide hydrolase family)
HD1030      37.2         91           271           488        cys regulon transcriptional activator
HD1031      33.8         67           274           385        conserved hypothetical protein
HD1032        40         96           168           395        DNA helicase II
HD1033     39.72         71           208           353        argininosuccinate lyase
HD1034     38.88         77           202           460        conserved hypothetical protein; possible sulfate
                                                               transporter
HD1036     37.62         79           203           315        conserved hypothetical protein
HD1037     40.54         95           274           438        1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
                                                               synthase
HD1039     38.92         84           230           348        histidyl-tRNA synthetase (hisS)
HD1040     35.42        179           257           395        conserved hypothetical protein
HD1041     35.38        149           202           493        conserved hypothetical protein
HD1042     42.64         96           403           433        phosphoribosylamine--glycine ligase
HD1043     43.49        136           294           438        phosphoribosylamine--glycine ligase
HD1044     32.78        182           676 **        785 **     hypothetical protein
HD1045     39.47        182           446           221        30S ribosomal protein S6
HD1046      33.6        135           430           584        primosomal replication protein N
HD1047     41.23        251 *         741 **        502        30S ribosomal protein S18
HD1048     42.67        191           404           232        50S ribosomal protein L9
HD1049     37.23        127           324           444        conserved hypothetical protein
HD1050     36.25         83           257           399        conserved hypothetical protein
HD1051     36.89         80           319           429        conserved hypothetical protein
HD1052     41.22        112           251           340        probable pseudouridine synthase
HD1053     36.93        123           485           513        nucleoside diphosphate kinase
HD1054      38.2         50           251           356        methionyl-tRNA synthetase
HD1055     39.57         58           262           388        o-succinylbenzoate-CoA synthase (OSB synthase)
HD1057     38.82         83           320           506        ribosomal small subunit pseudouridine synthase
HD1060     33.86        114           436           496        hypothetical protein
HD1061     39.28        147           335           439        conserved hypothetical protein
HD1062     38.77        124           270           460        endonuclease IV
HD1063     34.43        179           468           511        impA protein
HD1064     35.66        177           598 *         396        probable glycyl radical protein/pyruvate-formate
                                                               lyase
HD1065     19.05 ****   345 **        643 *         641        hypothetical protein
HD1066     41.82        102           309           542        uracil-DNA glycosylase (UDG)
HD1067     36.42        211           595           727 *      ATP-dependent helicase (fragment?)
HD1068      38.4         58           216           365        ATP-dependent helicase hrpA homolog
HD1069     40.63        118           247           440        ATP-dependent helicase hrpA homolog
HD1070     37.44        217           527           522        conserved hypothetical protein
HD1071     37.97        198           404           534        conserved hypothetical protein
HD1073     38.86         93           286           338        heat shock protein B25.3 grpE homolog (HSP-70
HD1074        35         62           269           298        spermidine / putrescine-binding periplasmic protein
HD1075     37.07         77           213           426        conserved hypothetical protein
HD1076     36.03         73           106           344        exodeoxyribonuclease V beta chain
HD1077     40.32        101           273           464        methylated-DNA--protein-cysteine methyltransferase
HD1078     38.46        108           220           255        outer membrane protein P1 precursor
HD1079     24.07 ***    373 ***       662 *         802 **     hypothetical protein
HD1080     39.74        133           337           463        conserved hypothetical protein
HD1082     38.66         46           263           322        cysteine desulfurase
HD1083     39.32        197           373           435        nifU protein homolog; metallocluster assembly
HD1084     37.65        143           430           597        conserved hypothetical protein
HD1085     34.67        162           359           475        chaperone protein hscB, heat shock cognate
HD1086     37.44         96           282           413        conserved hypothetical protein
HD1087     41.15         58           203           314        chaperone protein hscA, heat shock cognate 66
HD1088      38.3        145           354           322        [2Fe-2S] ferredoxin
HD1089     32.67        237           532           536        conserved hypothetical protein
HD1090     25.68 **     145           228           414        glycosyl transferase
HD1091     39.63         87           295           423        tRNA nucleotidyltransferase
HD1092     37.25        106           325           383        peptidyl-prolyl cis-trans isomerase B
HD1093     38.84         94           184           356        cysteinyl-tRNA synthetase
HD1094     37.57        108           254           305        outer membrane peptidase
HD1095     37.01         94           407           455        hypothetical protein
HD1096     32.83        189           467           563        hypothetical protein
HD1097      26.5 **     310 **        713 **        717 *      hypothetical protein
HD1098      37.2        114           289           415        ABC transporter, ATP-binding protein; possible D-
                                                               methionine transport ATP-binding protein metN
HD1099     36.43        116           356           441        D-methionine transport system permease protein metI
HD1100      35.3        106           333           431        28 kDa outer membrane lipoprotein precursor
HD1101     37.45         59           242           386        probable KDO kinase
HD1102     26.24 **     289 **        534           558        hypothetical protein
HD1103     36.68        137           267           371        GTP cyclohydrolase I
HD1104     40.08         95           259           391        pseudouridylate synthase I (truA)
HD1105     31.76 *      108           413           402        possible sigma 54 modulation protein
HD1106     36.36         72           341           426        lipid A biosynthesis lauroyl acyltransferase
HD1107      39.6         49           219           458        dihydrodipicolinate synthase
HD1108     38.19         88           224           374        5,10-methylenetetrahydrofolate dehydrogenase
                                                               (bifunctional protein)
HD1109     39.95         90           217           387        possible oxalate/formate antiporter
HD1110     39.76        107           300           463        formate dehydrogenase formation protein E
HD1111     38.55        143           368           388        formate dehydrogenase, gamma subunit
HD1112     38.46        296 **        604 *         673        formate dehydrogenase, iron-sulfur subunit, beta
                                                               chain
HD1113     40.12        157           318           424        formate dehydrogenase related protein
HD1115     37.11         65           263           403        endonuclease III
HD1117     35.89        159           305           441        possible transmembrane protein
HD1118     38.07        158           325           529        dihydrofolate reductase
HD1119     31.31 *      364 ***       619 *         473        hypothetical protein
HD1120     30.59 *      111           364           473        conserved hypothetical protein
HD1121     42.32         76           190           407        DNA repair protein radA (DNA repair protein sms)
HD1123     33.11        133           322           392        pilA-like biogenesis protein/prepilin peptidase
                                                               dependent protein D
HD1124     37.42         69           249           483        pilin B biogenesis protein/fimbrial transcription
                                                               regulation
HD1125     32.75        119           249           449        pilin C biogenesis protein/protein transport protein
                                                               hofC homolog
HD1126     30.99 *      146           296           505        conserved hypothetical protein (possible hopD
                                                               protein)
HD1127     38.83         97           345           545        conserved hypothetical protein; YacE protein homolog
HD1129     37.57        218           595           633        conserved hypothetical protein
HD1130     35.58        102           297           456        DNA polymerase III, delta subunit
HD1131     37.15        126           295           351        rare lipoprotein B precursor
HD1132     39.56         89           229           291        leucyl-tRNA synthetase, leucyl-tRNA ligase
HD1133     40.29         85           269           373        seryl-tRNA synthetase, seryl-tRNA ligase
HD1134     36.23        100           280           413        ssrA-binding protein, small major protein B
HD1136     38.72         69           234           417        conserved hypothetical protein; YcjX homolog
HD1137     38.99        204           618 *         609        hypothetical protein
HD1138     39.07         91           282           405        probable pseudouridine synthase Rlu family
HD1139     35.31        193           390           477        conserved hypothetical protein
HD1140     31.06 *      331 **        510           653        hypothetical protein
HD1141     40.42         75           160           405        possible peptidase or methyltransferase
HD1142     40.65         72           206           341        L-serine dehydratase (L-serine deaminase)
HD1143     35.53         76           270           371        serine transporter (sdaC)
HD1144     38.34        109           208           413        apolipoprotein N-acyltransferase, copper
HD1145     38.72        178           281           427        probable hemolysin, TlyC-like
HD1146     41.25        119           265           344        glycerol uptake facilitator protein glpF
HD1147     39.15        135           222           346        glycerol kinase
HD1148     41.79         87           337           486        glycerol kinase
HD1149      38.9         98           212           320        ATP-dependent proteinase
HD1150     38.48        132           269           295        glycerol-3-phosphatase transporter
HD1151     24.51 ***    248 *         626 *         670        hypothetical protein
HD1152     34.59        246 *         590           622        glycerophosphoryl diester phosphodiesterase
HD1153     36.16        269 *         493           506        glycerophosphoryl diester phosphodiesterase
HD1154     34.06        193           379           400        glycerophosphoryl diester phosphodiesterase (protein
                                                               D)
HD1155     37.28        108           274           418        hemolysin accessory protein (fragment)
HD1156     38.04         99           168           367        filamentous hemagglutinin 1
HD1157     42.13         84           212           420        anaerobic glycerol-3-phosphate dehydrogenase
HD1158      38.9         88           235           412        anaerobic glycerol-3-phosphate dehydrogenase
HD1160     37.33         81           282           453        anaerobic glycerol-3-phosphate dehydrogenase
HD1161     42.28         84           230           411        riboflavin-specific deaminase (bifunctional enzyme)
HD1162     37.65         93           271           400        riboflavin synthase alpha chain
HD1163     40.13         85           254           413        3,4-dihydroxy-2-butanone 4-phosphate synthase (GTP
                                                               cyclohydrase II)
HD1165     40.48        171           360           431        riboflavin synthase beta chain
HD1166     35.48        309 **        787 **        737 *      hypothetical protein
HD1167     39.47        139           342           486        transcription elongation factor greB
HD1168      39.1         91           252           395        polysialic acid capsule expression protein
HD1169     43.17         89           253           389        peptidase B
HD1170     36.94        112           275           324        lipoprotein E/outer membrane protein P4, OMP P4
                                                               lipoprotein
HD1171     35.05        137           324           368        conserved hypothetical protein
HD1172     40.59        134           304           395        RNA polymerase sigma-E factor sigma-24
HD1173     37.09        152           313           422        possible sigma-E factor negative regulatory factor
HD1174     36.36        117           356           562        possible sigma-E factor regulatory protein
HD1175     35.84         78           346           472        long-chain-fatty-acid-CoA ligase
HD1176     42.13        102           306           518        long-chain-fatty-acid-CoA ligase
HD1177      35.2        252 *         414           559        long-chain-fatty-acid-CoA ligase fragment
HD1178     40.83        101           286           467        uracil phosphoribosyltransferase
HD1179     36.44         61           296           342        dimethyladenosine transferase
HD1180     35.64        144           262           355        stationary phase survival protein SurA
HD1181     35.56        132           363           486        pyrimidine operon regulatory protein
HD1182     40.95         65           254           371        ADP-heptose synthase/possible ribokinase
HD1183     38.62         75           263           361        GTP-binding protein
HD1185     40.17         68           195           410        GTP pyrophosphokinase (ppGpp synthetase I)/ATP:GTP
                                                               3'-pyrophosphotransferase
HD1186     38.87        103           275           435        1-deoxy-D-xylulose 5-phosphate reductoisomerase
HD1187     37.61        152           271           384        acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine
HD1188     38.71        142           391           497        (3R)-hydroxymyristoyl-acyl carrier protein dehydrase
HD1189     40.45        129           231           343        UDP-3-O-[3-hydroxymyristoyl] glucosamine N-
                                                               acetyltransferase
HD1190     33.08        209           295           273        outer membrane protein, OMP26 homolog
HD1191     36.15         83           208           238        protective surface antigen D-15, 85-kilodalton outer
                                                               membrane protein
HD1192     34.86         77           271           402        transmembrane protein
HD1193     37.93        148           348           436        CDP diglyceride synthetase
HD1196     37.72        107           370           464        undecaprenyl pyrophosphate synthetase (UPPS)
HD1197     38.42        110           277           425        hydroxyacylglutathione hydrolase (glyoxylase II)
                                                               (GloB)
HD1199     35.67        103           330           426        phosphatidylglycerophosphatase B
HD1200     34.29        135           398           399        conserved hypothetical protein
HD1201     37.29         90           263           442        beta 1-4 glucosyltransferase
HD1202     39.23         72           263           400        heptosyltransferase III
HD1203     23.19 ***    336 **        566           698 *      hypothetical protein
HD1204     37.91         56           281           331        argininosuccinate synthetase
HD1205     33.04        140           258           429        conserved hypothetical protein; possible membrane
                                                               protein lapB
HD1206      35.5        151           302           462        ribonuclease H
HD1207     27.33 **     281 **        594           664        hypothetical protein
HD1208     32.16 *      174           312           398        colicin V production protein (cvpA)
HD1209     39.32         85           250           453        amidophosphoribosyltransferase (glutamine
                                                               phosphoribosylpyrophosphate amidotransferase)
HD1210     38.92        108           270           365        glutamine amidophosphoribosyltransferase
HD1211     30.62 *      123           365           456        conserved hypothetical protein
HD1212     33.07        147           447           398        small protein A SmpA homolog
HD1213        35        214           644 *         669        conserved hypothetical protein
HD1214     34.71        120           317           402        conserved hypothetical protein
HD1215     38.72        106           423           505        conserved hypothetical protein
HD1216      41.6         88           371           575        conserved hypothetical protein
HD1218      37.1        186           510           541        conserved hypothetical protein (possible secreted
                                                               protein)
HD1219     37.41         84           334           335        conserved hypothetical protein
HD1220     39.93         84           247           300        conserved hypothetical protein
HD1221     37.19        124           326           382        glycolate oxidase ykgE homolog
HD1222     36.31        192           589           547        L-lactate permease (lctP)
HD1223     37.04        189           528           507        hypothetical protein
HD1224     36.94        173           552           660        hypothetical protein
HD1225     34.68        158           593           619        hypothetical protein
HD1226     32.77        233           491           575        conserved hypothetical protein
HD1227     36.97        118           221           391        conserved hypothetical protein
HD1228      38.8        118           345           437        phosphoheptose isomerase
HD1229     37.41         90           264           431        transcriptional regulatory protein
HD1230      36.9         96           213           438        peptide transport periplasmic protein
HD1231     37.38        135           266           498        peptide transport system permease protein
HD1232     35.36        157           239           435        peptide transport system permease protein
HD1235     38.15        128           292           480        peptide transport system ATP binding protein
HD1236     38.63         87           157           361        DNA polymerase I (polA)
HD1237     37.12        148           305           418        outer membrane lipoprotein carrier precursor
HD1238     40.31         92           277           499        ribosomal protein S6 modification protein
HD1239     36.71        111           296           469        conserved hypothetical protein
HD1240     37.66         72           259           432        citrate lyase ligase/acetate:SH-citrate lyase ligase
                                                               (AMP)
HD1241      36.3        223           459           456        citrate lyase acyl carrier protein (gamma chain)
HD1242     39.31        115           274           402        citrate lyase beta chain
HD1243     40.05         65           200           308        citrate lyase alpha chain (citrase)
HD1245     37.85        102           226           438        citrate lyase related biosynthesis protein (2-(5'-
                                                               triphosphoribosyl)-3'-dephosphocoenzyme-A synthase)
HD1246      40.1        119           206           355        conserved hypothetical protein (possible
                                                               oxoglutarate/malate transporter)
HD1247     38.53         93           295           365        NADP-dependent malic enzyme (NADP-ME)
HD1248     34.38        251 *         858 ***       853 **     hypothetical protein
HD1249     39.24        192           495           390        50S ribosomal protein L25
HD1250     33.62         93           325           315        UshA precursor (UDP-sugar hydrolase)
HD1251      35.4        131           297           364        UDP-sugar hydrolase, 5'nucleotidase/5'-
                                                               nucleotidase/2',3'-cyclic phosphodiesterase
HD1252     23.81 ***    332 **        566           653        hypothetical protein
HD1253     35.83        162           377           471        diacylglycerol kinase
HD1254     38.37        100           285           415        symport protein
HD1256     37.75         97           181           415        recombination protein 2; rec2
HD1257     39.87         66           232           353        S-adenosylmethionine:tRNA ribosyltransferase-
                                                               isomerase (Queuosine biosynthesis protein queA)
HD1258     35.23         90           274           396        permease perM
HD1259     35.56        191           385           417        conserved hypothetical protein
HD1261     36.31        153           332           423        conserved hypothetical protein
HD1263     40.59         92           321           449        bis(5'-nucleosyl)-tetraphosphatase
HD1264     38.13         37           183           272        exoribonuclease II (ribonuclease II)
HD1266      40.3        110           304           315        enoyl-[acyl-carrier-protein] reductase
HD1267     36.33         99           311           415        conserved hypothetical protein
HD1268     34.97        116           213           364        esterase/lipase
HD1270     36.36        144           452           576        DNA replication inhibitor, sequestering protein
HD1271     39.25         92           232           412        O-succinylbenzoate-CoA synthase
HD1272     33.12        138           250           365        transmembrane protein (N-terminal region)
HD1273     35.57         58           135           374        transmembrane protein (C-terminal region)
HD1274     42.38         66           241           446        chorismate synthase
HD1275     43.68         70           244           410        penicillin-insensitive murein endopeptidase A
HD1276     39.48         74           181           392        DNA topoisomerase III
HD1277     32.73        199           483           483        possible protein-export membrane protein secG
HD1278     32.74        156           361           439        serine protease
HD1280     36.34        122           183           285        serine protease
HD1282      38.9         95           197           297        formate-tetrahydrofolate ligase
HD1283     34.23        282 **        762 **        848 **     hypothetical protein
HD1284     33.56        133           299           413        conserved hypothetical protein
HD1285     42.37        108           299           401        single-stranded DNA binding protein
HD1286     41.75         76           156           392        excinuclease ABC subunit A
HD1287     39.95         78           222           458        ATP-dependent helicase (dinG)
HD1288      35.8        171           460           558        hypothetical protein
HD1289      38.1        127           292           460        membrane protein
HD1290     41.22        120           355           363        conserved hypothetical protein
HD1291      40.5        128           406           287        glyceraldehyde 3-phosphate dehydrogenase
HD1292     43.02         75           211           336        rod shape-determining protein
HD1293     39.36         79           263           460        rod shape-determining protein
HD1294      36.2        179           362           508        rod shape-determining protein
HD1296     41.39        117           281           415        conserved hypothetical protein
HD1297     40.71        202           474           572        high-affinity zinc uptake system membrane
HD1298     31.56 *      110           252           368        tight adherence protein G
HD1299     31.05 *      131           338           410        tight adherence protein F
HD1300     34.12        146           410           453        tight adherence protein E
HD1301     32.93        128           301           290        tight adherence protein D
HD1302     35.97        104           305           318        tight adherence protein C
HD1303     37.39        107           287           393        tight adherence protein B
HD1304     39.95        164           305           277        tight adherence protein A
HD1305     34.94        112           308           324        TadZ
HD1306     35.16        148           424           363        rough colony protein B
HD1307     36.69        111           345           361        rough colony protein A
HD1308     36.44        153           338           311        rough colony protein C
HD1309     37.01        190           387           635        conserved hypothetical protein
HD1310        30 *      275 *         507           515        possible fimbrial protein Flp3
HD1311     29.27 **     249 *         488           475        possible fimbrial protein 2
HD1312     30.23 *      255 *         484           491        possible fimbriae associated protein flp1
HD1313     42.59        239           721 **        844 **     hypothetical protein
HD1314     33.33        299 **        650 *         637        hypothetical protein
HD1315     45.14        238           755 **        773 **     hypothetical protein
HD1316     46.36 *      176           700 **        933 ***    SanA protein
HD1317     42.91        235           579           769 **     hypothetical protein
HD1318     45.56 *      126           452           634        lysyl-tRNA synthetase
HD1319     39.19         90           369           450        possible integral membrane protein
HD1320     38.06        113           423           512        possible integral membrane protein
HD1321     38.73        221           422           528        probable integral membrane protein
HD1322     46.17 *      139           581           650        geranylgeranyl pyrophosphate synthase; farnesyl-
                                                               diphosphate synthase
HD1323     39.56        184           590           618        exodeoxyribonuclease, small subunit
HD1324     34.26        336 **        664 *         808 **     hypothetical protein
HD1325     42.51         92           459           694 *      conserved hypothetical protein
HD1326     32.96        115           336           520        hemolytic protein
HD1327     34.47        119           245           396        hemolytic protein
HD1328     42.24        177           428           583        2C-methyl-D-erythritol 2,4-cyclodiphosphate
HD1329     42.33        117           385           498        4-diphosphocytidyl-2C-methyl-D-erthyritol synthase
                                                               (MEP cytidyltransferase) (MCT)
HD1330     37.32        143           506           633        conserved hypothetical protein
HD1331     40.51        104           266           337        phosphoenolpyruvate carboxykinase/carboxylase
HD1332     36.86         93           263           369        membrane protein (lapB)
HD1334     43.23         84           290           399        dihydrolipoamide succinyltransferase component
HD1336     42.66         55           222           389        2-oxoglutarate dehydrogenase E1 component
HD1338     36.73         70           293           404        zinc uptake system ATP-binding protein (yebM)
HD1339     39.31         94           204           427        conserved hypothetical protein
HD1340     35.78         85           319           381        thiol:disulfide interchange protein
HD1342     39.14         56           214           421        single-stranded-DNA-specific exonuclease
HD1343     34.31        240           777 **        799 **     hypothetical protein
HD1344     39.64         69           264           494        conserved hypothetical protein
HD1345     36.41         64           255           399        nitrate/nitrite sensor protein
HD1346     36.44         96           310           495        nitrate/nitrite sensor protein NarQ
HD1348     40.87        102           311           429        conserved hypothetical protein
HD1349     37.11        136           391           559        conserved hypothetical protein
HD1350     37.13         82           225           435        protease DegS precursor
HD1351     39.41        142           275           439        cytidylate kinase
HD1352     36.93        139           421           175        30S ribosomal protein S1
HD1353     36.88        125           462           556        integration host factor, beta subunit
HD1354     32.29        145           392           420        conserved hypothetical protein
HD1355     32.91        136           320           465        conserved hypothetical protein
HD1356     38.82        116           350           441        orotidine 5`-phosphate decarboxylase; OMP
HD1357      39.1        213           402           486        conserved hypothetical protein
HD1359     36.28        188           504           548        conserved hypothetical protein
HD1360     38.14         40           319           479        phenylacrylic acid/phenolic acid decarboxylase
HD1361     30.38 *      171           397           476        conserved hypothetical protein
HD1362     34.46        133           312           386        conserved hypothetical protein
HD1363     38.67        118           189           369        antibiotic maturation factor PmbA
HD1364     33.33        399 ***       606 *         709 *      hypothetical protein
HD1365      38.6         90           247           404        carbonic anhydrase (carbonate dehydratase)
HD1366     34.19        187           491           625        cold-shock-like protein
HD1367     32.83        119           373           369        conserved hypothetical protein
HD1368     39.08         97           247           334        tRNA-guanine transglycosylase (tgt)
HD1369     35.83         91           367           408        conserved hypothetical protein
HD1370     41.41        123           279           349        phosphate permease
HD1371     35.54        130           308           339        conserved hypothetical protein
HD1372     38.83        104           227           439        replicative DNA helicase dnaB
HD1373     30.33 *      103           370           459        conserved hypothetical protein
HD1374     37.56        161           355           534        conserved hypothetical protein
HD1375     39.45         91           243           387        lysine-sensitive aspartokinase III
HD1376     26.85 **     347 **        517           631        hypothetical protein
HD1377     33.63        320 **        413           364        conserved hypothetical protein
HD1378     38.12         90           215           411        exopolyphosphatase/ metaphosphatase
HD1379     34.62         76           307           416        conserved hypothetical protein
HD1380     36.63         97           252           438        conserved hypothetical protein; possible
                                                               transcriptional regulator
HD1381     30.95 *      326 **        630 *         673        hypothetical protein
HD1382      38.2         96           248           387        phosphoserine transaminase
HD1383     40.44         92           204           431        3-phosphoshikimate 1-carboxyvinyltransferase
HD1384     37.21         74           202           409        N-acetylglutamate synthetase
HD1385     39.06         60           134           340        DNA topoisomerase I (omega-protein) (relaxing
                                                               enzyme)
HD1386     39.57         94           256           402        conserved hypothetical protein
HD1387     37.53        152           384           435        conserved hypothetical protein
HD1389     40.57        124           351           442        molybdopterin converting factor subunit 2
HD1390     36.59        163           441           514        molybdopterin converting factor subunit 1
HD1391     39.41        126           342           419        molybdenum cofactor biosynthesis protein C
HD1392      39.2         55           298           442        molybdenum cofactor biosynthesis protein A
HD1393     39.95        106           246           352        possible cytochrome c-type protein
HD1394     39.31         94           214           225        biotin sulfoxide reductase/anaerobic DMSO reductase
                                                               A
HD1395     31.18 *      304 **        735 **        808 **     hypothetical protein
HD1396     37.35         58           199           384        conserved hypothetical protein
HD1397        35        216           668 *         677        conserved hypothetical protein
HD1398     40.49         75           274           472        dihydrodipicolinate reductase
HD1399     34.44        140           388           401        hypoxanthine phosphoribosyl transferase (HPRT)
HD1400     35.99        115           179           361        soluble lytic murein transglycosylase
HD1401     40.65        148           307           494        probable transport protein
HD1402     38.14        187           374           503        conserved hypothetical protein
HD1403     37.21        153           382           495        conserved hypothetical protein
HD1404     37.46         64           215           305        glutaminyl-tRNA synthetase
HD1405     26.02 **     267 *         558           621        hypothetical protein
HD1407     39.15        138           333           304        elongation factor P (EF-P)
HD1408     28.57 **     194           667 *         748 *      hypothetical protein
HD1409     41.71        140           346           335        conserved hypothetical protein
HD1410     36.35        132           245           417        conserved hypothetical protein
HD1411     39.69         63           225           273        asparaginyl-tRNA synthetase (asnS)
HD1412     37.09         96           226           354        exodeoxyribonuclease I
HD1413     35.83         89           339           481        conserved hypothetical protein
HD1414     39.73         90           310           405        trpH protein
HD1416     38.61         57           188           405        excinuclease ABC subunit B
HD1417     33.33        193           421           442        conserved hypothetical protein
HD1418     38.93        112           240           444        XAA-pro aminopeptidase (X-pro aminopeptidase)
HD1419     39.38         90           184           328        aspartate aminotransferase; transaminase A;
HD1420     33.33        273 *         712 **        749 *      hypothetical protein
HD1421     40.19        145           462           522        phosphoribosylaminoimidazole carboxylase ATPase
HD1422     41.18        252 *         807 **        967 ***    hypothetical protein
HD1423     39.14        161           418           545        phosphoribosylaminoimidazole carboxylase ATPase
HD1424     40.29         99           303           404        phosphoribosylaminoimidazole carboxylase catalytic
                                                               subunit
HD1425     36.28        164           307           429        stringent starvation protein A
HD1426     33.83        116           358           397        stringent starvation protein B
HD1427     37.24         73           244           399        transcriptional regulator protein/anaerobic
                                                               regulatory protein Fnr/fumarate-nitrate reduction
                                                               protein
HD1428     34.51        165           410           500        universal stress protein A uspA
HD1429      38.1         42           178           323        alanyl-tRNA synthetase
HD1430      32.8        142           539           595        carbon storage regulator
HD1431     39.08         70           261           337        UTP-glucose-1-phosphate uridylyltransferase
HD1432     30.11 *       81           312           416        conserved hypothetical protein
HD1433     33.57        122           286           365        outer membrane protein P2 precursor
HD1434     24.24 ***    445 ****      730 **        877 **     hypothetical protein
HD1435     33.08         53           262           363        outer membrane protein P2 precursor
HD1436     39.82        134           368           624        type II secretion pathway protein (protein D)
HD1437     33.33        157           532           556        conserved hypothetical protein
HD1439     41.41        117           293           421        conserved hypothetical protein
HD1440      40.8        203           650 *         638        hypothetical protein
HD1441     40.54        264 *         583           545        hypothetical protein
HD1442     34.98        200           531           575        hypothetical protein
HD1443     37.31        151           390           452        conserved hypothetical protein
HD1444      36.1        135           242           393        conserved hypothetical protein
HD1445     29.56 **     149           456           572        nicotinamide phosphoribosyl transferase (plasmid
                                                               encoded)
HD1446     33.33        207           476           539        hypothetical protein
HD1447     35.48         59           203           338        nicotinamide phosphoribosyl transferase (plasmid
                                                               encoded)
HD1448     40.14        159           521           568        hypothetical protein
HD1449     40.09        275 *         581           543        hypothetical protein
HD1450     34.98        200           531           575        hypothetical protein
HD1451     37.31        151           390           452        conserved hypothetical protein
HD1452      35.9        137           240           398        conserved hypothetical protein
HD1453     29.56 **     155           465           582        hypothetical protein
HD1454     33.33        207           476           539        hypothetical protein
HD1455     35.42         61           203           338        nicotinamide phosphoribosyl transferase
HD1456     37.16         80           346           235        acetate kinase
HD1457     39.41         77           246           236        phosphotransacetylase
HD1459     37.69         79           287           414        tRNA pseudouridine synthase B
HD1460     35.17        131           373           383        ribosome binding factor A
HD1461     41.33        103           155           264        translation initiation factor 2
HD1462     38.04        104           214           319        N utilization substance protein A (nus A)
HD1463     34.84        164           405           441        conserved hypothetical protein
HD1465     38.79         58           177           393        folylpolyglutamate synthase/dihydrofolate synthase
HD1466     39.62         63           288           360        acetyl-CoA carboxylase carboxyltransferase, beta
HD1468     34.46        158           269           356        mazG beta-lactamase regulatory protein homolog
HD1469     37.31        124           285           349        transcriptional regulatory protein
HD1470     36.42         72           239           375        sensor protein for cpxR/basR
HD1471      36.3        123           315           441        conserved hypothetical protein
HD1472     30.59 *      248 *         436           395        conserved hypothetical protein
HD1473     34.34        107           391           486        thymidine kinase
HD1474     39.83         98           305           463        conserved hypothetical protein
HD1475     38.99         75           272           361        phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP
                                                               synthase)
HD1476     38.03         58           161           295        cell division protein K; sporulation protein spoIIIE
HD1477     33.95         78           329           411        leucine-responsive regulatory protein.
HD1478     34.22        109           240           389        ribonuclease D (rnd)
HD1479      32.2         75           197           370        possible Mlc (making large colonies) protein
HD1480      35.6         74           235           376        dethiobiotin synthetase homolog
HD1481     34.99        114           270           403        lipoprotein
HD1482     39.06        197           434           515        integration host factor alpha chain
HD1483     38.78         50           180           322        phenylalanyl-tRNA synthetase beta subunit
HD1484      37.5         60           264           327        phenylalanyl-tRNA synthetase, alpha subunit
HD1485      36.2        115           319           442        NAD(P)H nitroreductase/H-flavin oxidoreductase
HD1486     36.82         96           250           397        conserved hypothetical protein
HD1487     36.04        107           287           380        probable cation transport protein
HD1489      33.7        124           364           425        conserved hypothetical protein
HD1491     32.67        230           423           620        conserved hypothetical protein
HD1492     34.78        116           329           366        conserved hypothetical protein
HD1493     42.68        257 *         613 *         344        30S ribosomal protein S9
HD1494     39.01        233           601 *         383        50S ribosomal protein L13
HD1495     32.82        141           373           479        conserved hypothetical protein
HD1496     35.12        156           289           430        uridylyltransferase
HD1497     37.52         75           167           423        uridylyltransferase
HD1499     35.22        171           256           384        tyrosine-specific transport protein 2
HD1500     40.94         68           186           388        cell division protein H, a metalloprotease
HD1501     41.31         78           345           477        cell division protein J/heat shock protein,
                                                               methyltransferase
HD1502     30.21 *      318 **        773 **        881 **     hypothetical protein
HD1503     42.49         69           234           379        inosine 5' monophosphate dehydrogenase
HD1504     41.73         56           373           394        GMP synthase
HD1505     37.26         90           123           330        filamentous hemagglutinin 1
HD1507     40.97         92           322           410        phosphomannomutase/phosphoglucomutase
HD1508     34.18        150           290           395        conserved hypothetical protein
HD1509     33.33        170           720 **        830 **     conserved hypothetical protein
HD1511     39.97         89           265           382        UDP-N-acetylglucosamine pyrophosphorylase
                                                               (bifunctional enzyme)
HD1512     38.51         41           156           329        acriflavine resistance protein (acrB)
HD1513      40.7         80           255           456        conserved hypothetical protein; possible lipoprotein
HD1515     31.98 *      202           433           415        conserved hypothetical protein
HD1516     35.93         98           162           328        conserved hypothetical protein
HD1517     31.91 *      160           324           375        hypothetical protein
HD1518     37.31        211           500           592        bacteriophage Mu E16 protein
HD1519     38.13        134           325           443        conserved hypothetical protein
HD1520     43.61        110           451           651        conserved hypothetical protein
HD1522     33.33        346 **        607 *         664        hypothetical protein
HD1523     33.95        375 ***       489           499        hypothetical protein
HD1524     41.78        230           467           570        hypothetical protein
HD1525     44.95        148           481           596        possible mu-phage host-nuclease inhibitor
HD1526     31.17 *      197           485           563        hypothetical protein
HD1528     45.36 *      143           368           598        energy converting hydrogenase A (eha) protein
HD1529     43.37        169           370           535        conserved hypothetical protein
HD1530     45.77 *      103           488           630        conserved hypothetical protein
HD1532        46 *      184           476           651        conserved hypothetical protein
HD1533     48.18 **     191           616 *         883 **     conserved hypothetical protein
HD1534     43.09        240           687 **        802 **     hypothetical protein
HD1535      40.2        183           637 *         715 *      hypothetical protein
HD1537     30.39 *      247 *         707 **        851 **     hypothetical protein
HD1538      44.1        200           552           699 *      conserved hypothetical protein
HD1539     20.43 ****   681 *******   591           498        hypothetical protein
HD1540     35.88        189           371           359        hypothetical protein
HD1541     37.14         82           412           542        hypothetical protein
HD1542     35.26        180           341           386        hypothetical protein
HD1543      34.2        168           339           395        hypothetical protein
HD1545     32.53        139           594           629        hypothetical protein
HD1546     30.92 *      162           409           546        hypothetical protein
HD1547     36.64        116           467           475        conserved hypothetical protein
HD1548      38.4        144           446           621        conserved hypothetical protein
HD1549     44.99         86           345           484        hypothetical protein
HD1550     39.25        179           481           614        hypothetical protein
HD1552     37.04        135           365           507        conserved hypothetical protein
HD1553      41.5        120           451           484        conserved hypothetical protein
HD1554     39.81        166           360           467        possible bacteriophage Mu GP27
HD1555     42.84         52           221           365        bacteriophage Mu GP28
HD1556     40.74         93           268           330        conserved hypothetical protein
HD1557     41.57         88           208           363        bacteriophage Mu GP30 protein
HD1558     38.01         93           402           449        possible bacteriophage Mu G protein
HD1559     42.08        106           288           388        hypothetical protein
HD1560     40.92        208           416           370        hypothetical protein
HD1561     41.53        122           289           362        conserved hypothetical protein
HD1562     38.82         93           372           465        hypothetical protein
HD1563     39.95        159           408           555        hypothetical protein
HD1564     36.82        227           434           410        hypothetical protein
HD1565     40.73        135           388           460        conserved hypothetical protein
HD1567     42.62        144           444           563        conserved hypothetical protein
HD1568     43.53        121           476           661        hypothetical protein
HD1569     46.71 *      115           243           478        possible tail length tape measure protein
HD1571     45.05         76           343           460        hypothetical protein
HD1572     43.69        112           336           518        hypothetical protein
HD1573     45.36 *      139           394           562        hypothetical protein
HD1574      46.1 *      148           394           590        conserved hypothetical protein
HD1575     45.52 *      155           438           619        hypothetical protein
HD1576     44.24        244 *         696 **        747 *      hypothetical protein
HD1577     48.81 **     143           455           565        hypothetical protein
HD1578     45.59 *      239           568           591        hypothetical protein
HD1580     42.76         71           253           436        conserved hypothetical protein
HD1581     33.66        137           291           490        conserved hypothetical protein
HD1582     38.94        106           114           309        cell division protein MukB
HD1584     42.68        105           339           511        killing protein suppressor, mukE chromosome
                                                               partitioning protein homolog
HD1585     39.19        108           202           348        killing protein kicB, mukF chromosome partitioning
                                                               protein homolog
HD1586     31.37 *      315 **        739 **        866 **     hypothetical protein
HD1587     38.41         49           189           360        DNA gyrase / topoisomerase IV, subunit A
HD1588     42.08         79           234           246        polynucleotide phosphorylase (pnp)
HD1589     34.62        139           258           355        conserved hypothetical protein
HD1590     40.03        109           227           260        ATP-dependent RNA helicase (deaD)
HD1591     39.86        100           267           413        conserved hypothetical protein (cytosine deaminase-
                                                               related enzyme)
HD1592     37.67        129           338           399        possible HisH amidotransferase
HD1593     42.99         94           260           348        possible pyridoxine biosynthesis protein pyroA
HD1594     31.58 *      254 *         604 *         661        hypothetical protein
HD1595      34.1         82           208           392        transcription regulator, GntR family homolog
HD1596     36.02        170           391           314        ribosome recycling factor (ribosome releasing
                                                               factor) rrf
HD1597     39.64        100           270           350        uridylate kinase
HD1598     33.46         73           197           343        conserved hypothetical protein
HD1599     40.49        162           375           184        translation elongation factor (EF-Ts)
HD1600     37.38        123           425           220        30S ribosomal protein S2
HD1601     38.21         50           181           389        conserved hypothetical protein
HD1602     40.18        190           384           471        ATP-dependent RNA helicase (rhlB)
HD1603      37.9         94           260           436        ATP-dependent RNA helicase
HD1604     38.73        129           307           494        DNA repair protein (recO)
HD1605      37.2         43           260           401        GTP-binding protein era homolog (GTPase)
HD1606     36.77        154           323           431        ribonuclease III (rnc)
HD1607     36.85        109           262           465        signal peptidase I (SPase I)
HD1608     36.44         85           247           237        GTP-binding membrane protein
HD1609     42.74        157           517           661        hypothetical protein
HD1610     44.29        144           577           642        hypothetical protein
HD1611        39        104           477           581        hypothetical protein
HD1612     42.87        124           387           480        transposase
HD1613     33.93        186           364           438        hypothetical protein
HD1614     27.82 **     221           405           447        possible prophage ps3 protein 01
HD1615     26.57 **     246 *         594           546        hypothetical protein
HD1616     43.29         44           323           486        transposase
HD1617     37.27        137           449           636        hypothetical protein
HD1618     39.53        104           447           563        hypothetical protein
HD1619     38.65        100           253           457        amino acid transporter
HD1621     34.64        130           239           427        conserved hypothetical protein
HD1622      32.4         60           283           366        conserved hypothetical protein
HD1623     39.37         67           269           261        pyruvate dehydrogenase multienzyme complex,
                                                               E3/lipoamide dehydrogenase
HD1624     40.14        105           270           262        pyruvate dehydrogenase complex E2
                                                               component/dihydrolipoamide acetyltransferase
HD1625     38.22         72           277           198        pyruvate dehydrogenase multienzyme complex E1
HD1626     35.42         87           288           422        dihydroorotate dehydrogenase
HD1627     40.27        103           284           365        ribose-phosphate pyrophosphokinase
                                                               (phosphoribosylpyrophosphate synthase)
HD1628     37.34         76           285           419        isopentenyl monophosphate kinase
HD1629     35.08         38           230           368        outer membrane lipoprotein LolB precursor
HD1630     36.42         85           242           351        ABC transporter, ATP-binding protein (msbA)
HD1631     37.34        115           245           385        probable cytoplasmic axial filament
HD1632     40.39         69           232           343        conserved hypothetical protein
HD1633     41.46        232           610 *         648        conserved hypothetical protein
HD1634     39.17        129           439           530        conserved hypothetical protein
HD1636      39.3         62           253           419        lytic murein transglycosylase A (murein hydrolase A)
HD1637     35.91        117           312           383        exodeoxyribonuclease VII large subunit
HD1638     37.79         96           266           406        exodeoxyribonuclease VII large subunit
HD1639     39.95        114           340           266        hexosephosphate transport protein
HD1640     30.63 *      325 **        460           586        hypothetical protein
HD1641     35.98         56           253           326        purine nucleotide synthesis repressor protein/rbsR
                                                               repressor
HD1642     38.94        105           282           488        integral membrane protein of DedA family
HD1643     38.27         56           160           338        DNA gyrase subunit B (type II topoisomerase)
HD1644     30.26 *      240           561           625        hypothetical protein
HD1645     28.21 **     541 *****     743 **        888 **     hypothetical protein
HD1646     30.89 *      359 ***       698 **        698 *      hypothetical protein
HD1647     35.71        168           234           408        4-hydroxybenzoate octaprenyltransferase
HD1648     35.28         93           271           429        glycerol-3-phosphate regulon repressor
HD1649     35.65         82           225           302        adenylosuccinate lyase
HD1650     38.89        123           371           491        conserved hypothetical protein
HD1651     38.41         79           197           446        ABC system transport protein, ATP binding
HD1652     38.68        120           192           452        ABC system transport protein, ATP binding
HD1653     30.61 *      138           578           583        hypothetical protein
HD1654     38.14         60           151           394        conserved hypothetical protein
HD1655     35.38         76           229           356        possible outer membrane protein
HD1656     36.01        146           451           545        conserved hypothetical protein
HD1657     36.76        128           381           501        conserved hypothetical protein
HD1658     37.14        111           234           383        outer membrane antigenic lipoprotein b precursor
HD1659     38.84         82           315           397        phosphoglyceromutase
HD1660     34.56        167           305           387        uridine kinase
HD1661     40.51         97           293           418        deoxycytidine triphosphate deaminase
HD1662     39.13         97           228           337        NAD(P) transhydrogenase, subunit beta
HD1663     42.19         94           200           382        NAD(P) transhydrogenase alpha subunit
HD1664     38.68        111           331           414        tRNA/rRNA methyltransferase
HD1665     35.12        114           302           302        conserved hypothetical protein
HD1666     37.16        106           330           404        probable phosphatase
HD1667     37.58         84           296           509        bacterioferritin comigratory protein
HD1668     38.31         85           209           376        oxygen-independent coproporphyrinogen III oxidase
HD1669     39.92         37           187           264        dipeptide transporter protein dppA
HD1670     40.04        104           280           447        dipeptide ABC transporter, permease protein
HD1671     41.92         62           156           390        oligopeptide ABC transporter, ATP-binding protein
                                                               (oppD)
HD1672     38.29         93           299           392        oligopeptide transport system ATP-binding protein
HD1674      40.4        185           383           442        aerobic respiration control sensor protein
HD1675     36.81        138           573           629        hypothetical protein
HD1677     37.37         81           266           491        aerobic respiration sensor-response protein
HD1678     34.26         89           226           396        possible integral membrane protein
HD1679     36.14        115           325           448        conserved hypothetical protein
HD1680     34.43        117           336           443        dethiobiotin synthase
HD1681     36.63        118           297           477        biotin synthesis protein
HD1682     38.27        137           442           549        conserved hypothetical protein
HD1684     37.54        114           271           478        8-amino-7-oxonoanoate synthase
HD1685     40.41         83           255           395        adenosylmethionine-8-amino-7-oxononanoate (7,8-
                                                               diamino-perlargonic acid ATase)
HD1686     36.93        115           193           314        adenine-specific methylase
HD1687     32.38        297 **        710 **        820 **     hypothetical protein
HD1688     35.77        184           423           585        hypothetical protein
HD1689     38.64         86           290           398        transposase
HD1690     37.21         98           205           432        type III restriction-modification system enzyme
HD1691     35.24         90           227           362        site-specific DNA-methyltransferase; type III
                                                               restriction-modification system methyltransferase,
                                                               subunit mod
HD1692     37.58        326 **        625 *         712 *      type III restriction/modification methylase
HD1693     41.05        254 *         540           588        type III restriction/modification system
                                                               modification methylase
HD1694     38.39        114           535           624        hypothetical protein
HD1695     42.31        122           398           445        transposase
HD1696     37.91        179           383           441        transposase fragment
HD1697      33.1        118           430           460        hypothetical protein
HD1698     34.52        167           478           667        hypothetical protein
HD1699     37.95        157           394           465        transcription elongation factor protein greA
HD1700     37.93        101           210           384        penicillin-binding protein 4 precursor/D-ala-D-ala
                                                               carboxypeptidase
HD1701     37.57        108           390           501        penicillin-binding protein 4 precursor
HD1702     43.52        267 *         759 **        721 *      phosphoribosylaminoimidazolecarboxamide
                                                               formyltransferase fragment
HD1703     40.03         79           254           359        phosphoribosylaminoimidazolecarboxamide
                                                               formyltransferase (bifunctional purine biosynthesis
                                                               protein)
HD1704     36.32         68           167           372        organic solvent tolerance protein
HD1705     36.73         85           406           508        conserved hypothetical protein
HD1706     36.07        146           313           386        conserved hypothetical protein
HD1707     40.67        143           284           372        sodium / glutamate symport carrier protein
                                                               (glutamate permease)
HD1708     34.39        122           338           469        conserved hypothetical protein
HD1709     38.87         94           195           468        glutamate-ammonia-ligase adenylyltransferase
HD1710     41.49        119           470           562        conserved hypothetical protein
HD1711      39.7         68           319           490        acyl CoA thioester hydrolase
HD1712     32.43        119           301           550        intracellular septation protein
HD1713     32.46        160           274           442        hypothetical protein
HD1714     31.37 *      415 ***       694 **        653        hypothetical protein
HD1715     35.57        149           356           404        conserved hypothetical protein
HD1716     36.12         70           226           282        conserved hypothetical protein
HD1717     39.72         77           238           372        conserved hypothetical protein
HD1718     37.44        120           304           331        exonuclease III
HD1720     25.78 **     137           405           520        LOS biosynthesis enzyme( D-glycero-D-manno-heptosyl
                                                               transferase)
HD1721     27.11 **     215           388           493        LOS biosynthesis enzyme (beta-1,4-
                                                               galactosyltransferase)
HD1722     37.09        192           589           482        50S ribosomal protein L31
HD1723     41.39         67           203           262        transketolase isozyme 1
HD1724     34.36        132           436           588        PhoH protein homolog, ATP-binding protein
HD1726     39.64        148           304           544        PhoH protein homolog, ATP-binding protein
HD1727     38.15         68           209           360        fatty acid metabolism regulator protein
HD1728     37.22         72           210           303        Na+/H+ antiporter protein
HD1729     37.22        134           406           480        disulfide bond formation protein B (disulfide
                                                               oxidoreductase)
HD1730     23.66 ***    354 ***       758 **        902 ***    hypothetical protein
HD1731     37.12         48           163           305        ribonucleoside-diphosphate reductase alpha chain
                                                               (large subunit)
HD1732     34.66        110           246           293        ribonucleoside-diphosphate reductase beta chain
                                                               (small subunit)
HD1733     36.36        265 *         740 **        868 **     hypothetical protein
HD1734     40.69        104           256           440        MRP protein homolog, ABC-related ATP-binding protein
HD1735     36.67         55           199           430        oligopeptide transporter, periplasmic-binding
                                                               protein
HD1736     36.73         66           325           583        probable ABC-related permease
HD1737     34.57         91           199           334        peptidyl-prolyl cis-trans isomerase D
HD1738     38.89        220           516           330        30S ribosomal protein S15
HD1739     35.09        180           688 **        859 **     hypothetical protein
HD1740     35.27         64           238           401        hemY protein homolog
HD1741     36.63        128           161           352        uroporphyrinogen III methylase
HD1742     36.64         97           278           451        uroporphyrinogen III synthase
HD1744     40.65        127           367           540        conserved hypothetical protein
HD1745     39.27         65           307           505        ABC transporter, ATP-binding protein
HD1746     25.81 **     458 ****      593           706 *      hypothetical protein
HD1747     28.95 **     337 **        686 **        651        hypothetical protein
HD1748     40.95         94           257           388        DNA gyrase / topoisomerase IV, subunit A
HD1749      37.8        137           478           534        possible endonuclease V
HD1750     37.69         94           251           420        3-demethylubiquinone-9 3-methyltransferase
HD1751     35.35        186           411           327        conserved hypothetical protein
HD1752     40.22         82           223           322        protein-export membrane protein secD
HD1753     37.54        100           231           339        protein-export membrane protein
HD1754      36.1        130           286           308        ferritin (rsgA)
HD1755     33.33        117           365           364        ferritin (rsgA)
HD1756     38.94        149           307           416        conserved hypothetical protein; possible transporter
HD1757     42.62        141           270           511        Holliday junction DNA helicase ruvB protein
HD1758      39.6        103           320           458        Holliday junction DNA helicase ruvA protein
HD1759     36.23        127           340           487        orotate phosphoribosyltransferase
HD1760     39.98         55           222           404        conserved hypothetical protein
HD1761     36.59        111           329           434        ampD signalling protein
HD1762     39.46         99           362           511        pseudouridine synthase RluD
HD1764     39.32         78           170           389        ATP-dependent helicase (hepA)
HD1765     37.47         78           172           342        RNA methyltransferase
HD1766     38.27         92           265           464        molybdopterin biosynthesis protein moeB
HD1767     40.65         63           218           362        molybdopterin biosynthesis protein moeA
HD1768     39.59         68           187           356        ABC transporter, ATP-binding protein
HD1769     37.13         99           240           451        conserved hypothetical protein
HD1770     37.53         70           279           402        conserved hypothetical protein
HD1771     37.61        137           294           448        heat shock protein dnaJ-related
HD1772     39.66        143           306           376        peptidoglycan-associated outer membrane
HD1773     39.97        101           269           479        colicin tolerance protein (tolB)
HD1774      34.7        158           392           490        outer membrane integrity protein (C-terminal region)
HD1775     33.94        177           265           312        outer membrane integrity protein (N-terminal region)
HD1776     31.97 *      177           381           473        colicin transport protein (tolR)
HD1777     36.71         96           303           378        colicin transport protein (tolQ)
HD1778     34.62        201           379           486        conserved hypothetical protein
HD1779     28.52 **     312 **        403           545        conserved hypothetical protein
HD1780     33.33        222           698 **        792 **     hypothetical protein
HD1781     36.41        103           263           250        cytochrome D ubiquinol oxidase, subunit II
HD1782      36.3        103           260           235        cytochrome D ubiquinol oxidase, subunit I
HD1783     33.33        225           310           326        conserved hypothetical protein
HD1784     39.96         61           279           267        heat shock protein groEL
HD1785     34.71        178           442           350        groES chaperonin
HD1786     38.85        161           343           457        mutator mutT protein/dGTP triphosphohydrolase
HD1788     38.74         56           159           296        preprotein translocase SecA subunit
HD1789     34.89        162           478           577        hypothetical protein
HD1790     26.92 **     120           443           557        hypothetical protein
HD1791     40.71        164           412           549        transcriptional regulator (possible murein gene
                                                               regulator)
HD1792     33.33        165           394           483        possible lipoprotein
HD1793     38.93         99           362           432        conserved hypothetical protein
HD1794     37.79        122           338           429        conserved hypothetical protein
HD1795     38.61        167           473           503        conserved hypothetical protein
HD1796     31.97 *      213           607 *         684        hypothetical protein
HD1797     36.59        117           290           434        conserved hypothetical protein
HD1798     34.41        234           515           666        hypothetical protein
HD1799     39.83        208           474           348        50S ribosomal protein L20
HD1800     36.36        189           533           380        50S ribosomal protein L35
HD1802     36.96        203           376           368        translation initiation factor IF-3
HD1803     40.11         61           183           320        threonyl-tRNA synthetase (thrS)
HD1804        39         73           284           451        conserved hypothetical protein
HD1805     38.38        167           378           482        MAF-like protein
HD1806     38.49         37           167           402        thiamine biosynthesis protein
HD1807     40.03         66           255           362        adenylosuccinate synthetase
HD1808     37.73        119           230           374        hflC protein (hflC)
HD1809     39.39         93           221           321        hflK protein (hflK)
HD1810     38.05        109           336           358        thioredoxin m
HD1811     39.52        105           228           374        uracil permease (uraA)
HD1812     37.85         70           211           449        excinuclease ABC, subunit C (uvrC)
HD1813     37.12         86           283           442        phosphatidylglycerophosphate synthase
HD1814     37.69        201           290           387        carrier-transport protein
HD1815     34.82        107           429           487        desulfoviridin gamma subunit/sulfite reductase
HD1816     39.18         85           237           392        iron (chelated) ABC transporter, periplasmic-binding
                                                               protein
HD1817     38.34         76           269           396        iron (chelated) ABC transporter, ATP-binding protein
HD1818     39.07        119           379           477        adenine phosphoribosyltransferase (apt)
HD1819     38.08         96           145           333        DNA polymerase III, subunits gamma and tau (dnaX)
HD1820     34.42        114           200           336        ABC-type multidrug transporter, ATP binding protein
HD1821     34.78        137           232           460        ABC-type multidrug transporter, permease protein
HD1823      36.1         73           201           357        molybdenum ABC transporter, periplasmic substrate-
                                                               binding
HD1824      38.1        114           298           418        molybdenum ABC transporter, permease protein
HD1825     38.24        215           757 **        705 *      hypothetical protein
HD1826     35.61        128           172           351        molybdenum ABC transporter, ATP-binding protein
HD1827      35.4         85           388           484        conserved hypothetical protein
HD1828     41.91        274 *         521           639        hypothetical protein
HD1829     35.54         63           267           437        probable outer membrane protein
HD1830     37.84        113           281           395        5'-guanylate kinase
HD1831     39.87         84           312           398        xanthine-guanine phosphoribosyltransferase
HD1832     36.71        101           279           391        aminoacyl-histidine dipeptidase
HD1833     34.85        109           375           520        UDP-N-acetyl-D-mannosaminuronic acid transferase
HD1835     35.94        107           310           442        4-alpha-l-fucosyltransferase (TDP-Fuc4NAc:lipidII
                                                               transferase )
HD1836     39.25         82           249           451        4-alpha-l-fucosyltransferase (TDP-Fuc4NAc:lipidII
                                                               transferase )
HD1837     36.42        127           376           587        lipopolysaccharide biosynthesis protein, WZXE-like
HD1838     39.95        146           341           580        lipopolysaccharide biosynthesis protein, WZXE-like
HD1840      39.7        121           331           561        lipopolysaccharide biosynthesis protein
HD1841     40.74        134           300           469        lipopolysaccharide biosynthesis protein
HD1842     42.25         89           227           417        UDP-N-acetyl-D-mannosaminuronic acid
HD1843     40.37        116           316           540        UDP-N-acetylglucosamine 2-epimerase
HD1844     39.34        129           234           494        undecaprenyl-phosphate alpha-N-
                                                               acetylglucosaminyltransferase
HD1845     42.41         76           303           533        N-acetylglucosamine-6-phosphate deacetylase
HD1847     37.31         75           248           465        glucosamine-6-phosphate isomerase
HD1849     48.04 **     252 *         840 ***       909 ***    N-acetylneuraminate lyase
HD1850     37.16        121           322           475        N-acetylneuraminate lyase
HD1852     46.38 *       90           298           487        conserved hypothetical protein
HD1853     39.65         71           216           341        2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-
                                                               carboxylate synthase
HD1854      38.8        113           287           398        conserved hypothetical protein
HD1856      35.2        129           272           461        hypothetical protein
HD1857      39.5        126           311           424        hexulose-6-phosphate synthase
HD1859     38.03        132           372           484        PTS system Enzyme II-A permease component
HD1860     38.01         80           237           338        carbohydrate transport protein SGAT
HD1861     39.29        125           287           257        conserved hypothetical protein
HD1863     36.14        129           280           464        transcription regulator, DeoR family
HD1864     39.72        103           294           331        hexulose-6-phosphate isomerase (HUMPI)
HD1866        43         97           396           521        L-ribulose-phosphate-4-epimerase
HD1867     41.09        109           662 *         648        peptidyl-prolyl cis-trans isomerase fragment
HD1868     44.44        355 ***       756 **        858 **     peptidyl-prolyl cis-trans isomerase
HD1869     37.37        403 ***       815 **        693 *      hypothetical protein
HD1870     43.59        127           327           509        C-terminal region of competence protein M
HD1872     42.95        111           360           560        N-termianl region of competence protein M
HD1874     41.54         99           241           348        probable monooxygenase visC
HD1875     36.84        101           240           464        tyrosine-specific transport protein (tyrP)
HD1876     41.95         90           284           244        DNA-directed RNA polymerase, beta' chain (rpoC)
HD1877     39.49         95           261           214        DNA-directed RNA polymerase beta chain
                                                               (transcriptase beta chain)
HD1878     37.18        258 *         686 **        733 *      hypothetical protein
HD1879      40.5        244 *         554           361        50S ribosomal protein L7/L12
HD1881     40.85        203           419           337        50S ribosomal protein L10
HD1882     38.84        177           444           204        50S ribosomal protein L1
HD1884      41.6        207           562           371        50S ribosomal protein L11
HD1885     40.43        123           376           366        transcription antitermination protein nusG
HD1886     40.05        155           431           514        preprotein translocase secE subunit
HD1887     39.55         72           153           419        possible integral membrane protein
HD1888     39.28         95           272           499        DNA processing chain A
HD1889      37.6        139           329           445        peptide deformylase (PDF) (Polypeptide deformylase)
HD1890     36.94        126           270           426        ADP-L-glycero-D-manno-heptose-6-epimerase
HD1891     38.74        150           391           666        drug resistance protein QACE
HD1892     35.25        145           335           499        hypothetical protein
HD1893     35.35        173           464           624        possible cytoplasmic membrane protein
HD1894     39.77         70           228           364        glucosamine-fructose-6-phosphate
HD1895     36.08         81           246           357        accessory processing protein, high molecular weight
HD1896     36.24        108           279           403        conserved hypothetical protein
HD1897     27.03 **     270 *         571           697 *      hypothetical protein
HD1898     37.34        112           340           442        MTA/SAH nucleosidase
HD1899     36.04        201           541           618        possible SlyX protein
HD1900     37.01        111           355           362        peptidyl-prolyl cis-trans isomerase
HD1901      35.6         87           339           381        conserved hypothetical protein
HD1902     35.45        139           448           567        conserved hypothetical protein
HD1903     33.33        198           470           514        conserved hypothetical protein
HD1904     29.96 **     174           568           502        conserved hypothetical protein
HD1906     38.25         93           337           458        glutamate racemase
HD1907     44.97        135           425           438        uridine phosphorylase
HD1908     43.81        268 *         821 ***       812 **     uridine phosphorylase fragment
HD1909     41.55        235           562           548        uridine phosphorylase fragment
HD1911      33.6         73           330           441        transcription regulatory protein
HD1912        15 *****  496 *****     504           622        hypothetical protein
HD1913     37.36         58           274           294        aspartate--ammonia ligase (asparagine synthetase A)
HD1915     38.22        119           319           507        conserved hypothetical protein
HD1916     36.89         77           290           386        conserved hypothetical protein (possible reductase)
HD1917     34.87        142           282           389        probable ECF-family RNA polymerase sigma factor
HD1918     29.68 **     183           447           461        hypothetical protein
HD1919     42.19         97           256           428        prolyl-tRNA synthetase (proline-tRNA ligase)
HD1920     33.67        110           272           434        hypothetical protein
HD1921     42.36         76           171           411        ATP-dependent DNA helicase
HD1923     42.16        165           421           469        DNA-directed RNA polymerase, omega chain
HD1924     39.95         93           213           388        guanosine-3',5'-bis(diphosphate)3'-
                                                               pyrophosphohydrolase
HD1925     43.24        114           301           373        dihydroxynaphthoic acid synthase
HD1926     37.12        319 **        682 **        549        50S ribosomal protein L36
HD1927     37.04        157           429           405        conserved hypothetical protein (weakly similar to
                                                               50S ribosomal L31 protein)
HD1929     41.04        127           368           445        D-ribulose-phosphate-3 epimerase
HD1930     33.33        262 *         725 **        773 **     hypothetical protein
HD1931     36.32        219           629 *         464        acyl carrier protein (ACP)
HD1932     36.29        124           249           393        conserved hypothetical protein
HD1933     39.77         60           261           397        thymidylate kinase (DTMP)
HD1935      38.2        148           276           356        DNA polymerase III, delta' subunit
HD1936      41.7         89           344           490        conserved hypothetical protein
HD1937     37.78        112           357           426        conserved hypothetical protein
HD1938     39.01        100           402           515        conserved hypothetical protein
HD1939     35.11        128           398           509        conserved hypothetical protein
HD1940     41.53        100           315           520        integrase/recombinase
HD1941      37.5        167           402           581        conserved hypothetical protein
HD1942     43.06         87           273           342        glycyl-tRNA synthetase beta subunit
HD1943     39.82         80           274           264        glycyl-tRNA synthetase alpha subunit
HD1944     31.18 *      266 *         886 ***       939 ***    hypothetical protein
HD1945      37.3         99           290           324        conserved hypothetical protein
HD1946     39.89        263 *         524           366        50S ribosomal protein L19 (rpL19)
HD1947     42.72         96           322           456        tRNA (Guanine-N(1)-)-methyltransferase (M1G-
                                                               methyltransferase)
HD1948     38.64        132           325           438        16S rRNA processing protein RimM
HD1949     46.18 *      189           619 *         404        30S ribosomal protein S16 (rpS16)
HD1950     39.84        131           532           355        50S ribosomal protein L17 (rpL17)
HD1951      39.7        137           281           275        DNA-directed RNA polymerase alpha subunit
HD1952     39.23        157           372           269        30S ribosomal protein S4 (rpS4)
HD1953     46.15 *      155           500           353        30S ribosomal protein S11
HD1954      40.9        203           487           340        30S ribosomal protein S13 (rpS13)
HD1955     36.84        319 **        806 **        588        50S ribosomal protein L36 (rpL36)
HD1957     36.44        116           234           357        preprotein translocase secY
HD1959     38.62        261 *         502           308        50S ribosomal protein L15 (rpL15)
HD1960     33.89        260 *         590           486        50S ribosomal protein L30
HD1961     41.72        136           419           233        30S ribosomal protein S5
HD1962     44.07        202           487           346        50S ribosomal protein L18 (rpL18)
HD1963     39.51        175           390           245        50S ribosomal protein L6 (rpL6)
HD1964     37.66        133           340           305        30S ribosomal protein S8
HD1965     41.18        171           511           382        30S ribosomal protein S14 (rpS14)
HD1966     37.96        138           364           285        50S ribosomal protein L5 (rpL5)
HD1967     31.41 *      177           439           331        50S ribosomal protein L24
HD1968      42.2        174           461           349        50S ribosomal protein L14 (rpL14)
HD1970     54.56 ***    160           784 **        976 ***    insertion element IS1/IS150 protein
HD1971     52.63 ***    167           703 **        784 **     insertion element IS1/IS150 protein
HD1972     48.65 **     250 *         748 **        863 **     hypothetical protein
HD1973     35.24        358 ***       743 **        667        hypothetical protein
HD1974      34.9        294 **        640 *         470        30S ribosomal protein S17
HD1975     38.54        204           382           350        50S ribosomal protein L29
HD1976     42.82        192           460           315        50S ribosomal protein L16
HD1977     41.13        163           319           263        30S ribosomal protein S3
HD1978     38.44        238           516           351        50S ribosomal protein L22
HD1979     42.03        199           485           408        30S ribosomal protein S19
HD1980     40.63        212           440           173        50S ribosomal protein L2
HD1981     37.25        283 **        535           407        50S ribosomal protein L23
HD1982     37.31        227           518           286        50S ribosomal protein L4
HD1983     39.87        172           500           263        50S ribosomal protein L3
HD1984     38.46        177           517           292        30S ribosomal protein S10
HD1985      31.6 *      183           362           490        possible DNA transformation protein
HD1986     38.85         96           216           333        fumarate hydratase class II
HD1987     37.46         87           173           379        virulence factor protein (MviN)
HD1989     29.17 **     207           685 **        701 *      hypothetical protein
HD1990     38.15        240           490           384        30S ribosomal protein S20
HD1991     37.04         77           229           416        trk system potassium uptake protein
HD1992      39.6         66           247           421        SUN protein (FMU protein)
HD1993     38.47         71           190           426        selenocysteine-specific elongation factor (SelB
                                                               translation factor)
HD1994     40.93        106           298           487        L-seryl-tRNA(Sec) selenium transferase
HD1995     45.95 *      188           786 **        870 **     hypothetical protein
HD1996      43.2        144           478           493        MioC protein
HD1997     32.26        302 **        645 *         740 *      hypothetical protein
HD1999     39.25         73           274           371        signal recognition particle protein 54
HD2000     40.05        151           276           418        conserved hypothetical protein
HD2001      43.7        134           366           578        conserved hypothetical protein
HD2002     37.05        114           271           444        membrane-bound lytic murein transglycosylase C
HD2003     34.74         96           327           418        conserved hypothetical protein
HD2004     40.86         76           234           489        A/G-specific adenine glycosylase
HD2006     40.33        105           364           404        heat shock protein HslV (ClpQ); protease
HD2007      38.9        134           299           342        ATP-dependent ClpY-related protease; heat shock
                                                               protein
HD2008     41.35         91           266           275        phosphoribosylformylglycinamidine synthase
HD2009     42.72         44           219           341        phosphoribosylformylglycinamidine synthase
HD2010     43.59        120           430           448        phosphoribosylformylglycinamidine synthase C-
                                                               terminal fragment
HD2011     30.77 *      214           438           538        conserved hypothetical protein
HD2012     39.58        131           211           350        lipoate biosynthesis protein A
HD2013     38.22        131           366           546        lipoate biosynthesis protein B
HD2014        25 ***    196           644 *         698 *      hypothetical protein
HD2015     35.03        132           450           540        conserved hypothetical protein
HD2016     36.72         78           266           359        D-Ala-D-Ala carboxypeptidase (penicillin-binding
                                                               protein 5)
HD2017     35.86        136           380           525        rare lipoprotein A
HD2019     38.93         60           225           482        rod-shape-determining protein
HD2020     39.04         81           200           435        penicillin binding protein 2
HD2022     43.38         87           333           547        conserved hypothetical protein
HD2023     40.63        128           402           423        conserved hypothetical protein
HD2024     42.13         67           224           474        DNA mismatch repair protein
HD2025     35.11        104           172           345        hemoglobin utilization protein A
HD2027     38.56        174           359           427        large-conductance mechanosensitive channel
HD2028     37.65        128           274           474        TRK system potassium uptake protein (trkH)
HD2029     40.38         86           262           377        methionyl-tRNA formyltransferase
HD2030     33.71         93           204           391        hypothetical protein
HD2032     40.32        104           268           428        amino acid ABC transporter, ATP-binding protein
HD2033     40.31         90           281           542        amino acid ABC transporter, permease component
HD2034     29.41 **     319 **        718 **        924 ***    hypothetical protein
HD2035     39.46        104           276           414        amino acid ABC transporter, periplasmic-binding
                                                               protein
HD2037     30.12 *      197           421           410        conserved hypothetical protein


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