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Haemophilus ducreyi


Proteome comparisons using the sets of annotated genes from the genomes of Haemophilus ducreyi and Haemophilus influenzae were performed. In the first comparison entitled "Haemophilus ducreyi proteins with no similarity to known Haemophilus spp. proteins in GenBank", proteins that appear to be unique to Haemophilus ducreyi with respect to other Haemophilus spp. are reported. In the second comparison entitled "Haemophilus influenzae proteins with no similarity to known Haemophilus ducreyi proteins in GenBank", proteins in Haemophilus influenzae that do not appear in Haemophilus ducreyi are reported.


Haemophilus ducreyi proteins with no similarity to known Haemophilus spp. proteins in GenBank.

H. ducreyi proteins were blasted against the nr protein database (GenBank) and a collection of H. ducreyi sequences with no significant similarity (BLAST p-value > 1e-3) to any other Haemophilus spp. was compiled. The majority of the H. ducreyi sequences had no match to any GenBank entry and are not included below. However, a small number did have matches (BLAST p-value < 1e-6) and these are tabulated below. The first and second columns in the table record the database ID and definition, or predicted function, as annotated in our database, of each H. ducreyi protein. The third and fourth columns provide the GenBank accession number and the associated species for one orthologous protein; when more than one ortholog was known, the one with the strongest match was recorded. The data in this table can change with the growth of GenBank.

Gene ID   Database Definition                  GenBank GI  Nearest Neighbor
--------- ------------------------------------ ----------  ----------------------------

HD0023    permease                                24324225  Wigglesworthia brevipalpis
HD0038    conserved hypothetical protein          17232366  Nostoc sp. PCC 7120
HD0053    possible beta-galactoside               15602053  Pasteurella multocida
HD0066    conserved hypothetical protein          17986684  Brucella melitensis
HD0097    conserved hypothetical protein          15794759  Neisseria meningitidis Z2491
HD0105    conserved hypothetical protein          16760390  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD0108    conserved hypothetical protein          15794761  Neisseria meningitidis Z2491
HD0136    conserved hypothetical protein          17545582  Ralstonia solanacearum
HD0143    bacteriophage TM4 gp14 protein          17975176  Bacteriophage phiE125
          homolog
HD0148    conserved hypothetical protein          15837124  Xylella fastidiosa 9a5c
HD0150    conserved hypothetical protein          17987626  Brucella melitensis
HD0153    conserved hypothetical protein          22996501  Xylella fastidiosa Ann-1
HD0154    conserved hypothetical protein          22996765  Xylella fastidiosa Ann-1
HD0159    conserved hypothetical protein          19568172  Actinobacillus
                                                            actinomycetemcomitans
HD0164    conserved hypothetical protein           7592819  Actinobacillus
                                                            actinomycetemcomitans
HD0165    malate:quinone oxidoreductase           23098401  Oceanobacillus iheyensis
HD0191    metallopeptidase                        21289838  Anopheles gambiae str. PEST
HD0216    conserved hypothetical protein          13473733  Mesorhizobium loti
HD0279    conserved hypothetical protein          19911156  Actinobacillus
          (possible outer membrane protein)                 actinomycetemcomitans
HD0285    minor fimbrial subunit                  16761730  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD0290    transposase (transposase fragment)      21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD0291    transposase                             21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD0294    conserved hypothetical protein           7515492  Staphylococcus aureus
                                                            bacteriophage phi-42
HD0295    transposase                             21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD0296    conserved hypothetical protein          unpubl.   Actinobacillus
                                                            actinomycetemcomitans
HD0338    conserved hypothetical protein          15602970  Pasteurella multocida
HD0343    conserved hypothetical protein          16762352  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD0365    conserved hypothetical protein          15602219  Pasteurella multocida
HD0375    conserved hypothetical protein           9631680  Paramecium bursaria
          (probable glycosyltransferase)                    Chlorella virus 1
HD0377    adenosine deaminase                     21623744  Lactobacillus helveticus
HD0393    ribonucleoside-triphosphate             15643151  Thermotoga maritima
          reductase
HD0457    soluble cytochrome b562 precursor       15602535  Pasteurella multocida
          (Cytochrome b-562)
HD0479    conserved hypothetical protein          15794211  Neisseria meningitidis Z2491
          (possible DNA-binding protein)
HD0480    conserved hypothetical protein          15794212  Neisseria meningitidis Z2491
HD0482    phage transposase                       15834199  Escherichia coli O157:H7
HD0489    conserved hypothetical protein          15794759  Neisseria meningitidis Z2491
HD0500    conserved hypothetical protein          15794131  Neisseria meningitidis Z2491
HD0509    conserved hypothetical protein          15794742  Neisseria meningitidis Z2491
          (possible DNA-binding protein)
HD0511    conserved hypothetical protein          15794242  Neisseria meningitidis Z2491
HD0512    conserved hypothetical protein          15676975  Neisseria meningitidis MC58
HD0522    conserved hypothetical protein          24372269  Shewanella oneidensis MR-1
HD0523    conserved hypothetical protein          17545582  Ralstonia solanacearum
HD0525    conserved hypothetical protein          15837121  Xylella fastidiosa 9a5c
HD0532    conserved hypothetical protein          15837124  Xylella fastidiosa 9a5c
HD0538    conserved hypothetical protein          22995506  Xylella fastidiosa Dixon
HD0563    conserved hypothetical protein          19746339  Streptococcus pyogenes
                                                            MGAS8232
HD0590    conserved hypothetical protein          15602649  Pasteurella multocida
HD0591    P70 protein (possible lemA protein      17861367  Pasteurella multocida
          homolog)
HD0607    conserved hypothetical protein          16764990  Salmonella typhimurium LT2
HD0665    conserved hypothetical protein          15603839  Pasteurella multocida
HD0668    conserved hypothetical protein          16330897  Synechocystis sp. PCC 6803
HD0678    site-specific recombinase               15603333  Pasteurella multocida
HD0680    conserved hypothetical protein          15603431  Pasteurella multocida
          (possible periplasmic protein)
HD0713    conserved hypothetical protein          22985728  Burkholderia fungorum
          (possible dnaJ-family protein)
HD0746    conserved hypothetical protein          16760656  Salmonella enterica subsp.
          (possible endo-1,4-beta-xylanase A                enterica serovar Typhi
          precursor)
HD0773    fatty acid/phospholipid synthesis       20141773  Pasteurella multocida
          protein plsX
HD0793    transport system permease protein       15832069  Escherichia coli O157:H7
HD0794    hypothetical protein
HD0795    thiosulfate sulfur transferase          18310034  Clostridium perfringens
HD0799    hypothetical protein
HD0805    conserved hypothetical protein          15603408  Pasteurella multocida
HD0884    conserved hypothetical protein (part    15602375  Pasteurella multocida
          of lsg locus ?)
HD0890    N-acetyl-gamma-glutamyl-phosphate       17544861  Ralstonia solanacearum
          reductase
HD0891    acetylglutamate kinase                  20808851  Thermoanaerobacter
                                                            tengcongensis
HD0905    IstB C-terminal homolog                  9507562  Plasmid R100
HD0907    conserved hypothetical protein          10957032  Acinetobacter sp. SUN
HD0914    possible type I restriction enzyme M    16763059  Salmonella enterica subsp.
          protein                                           enterica serovar Typhi
HD0923    conserved hypothetical protein          17547291  Ralstonia solanacearum
HD0955    conserved hypothetical protein           6409126  Vibrio cholerae
HD0956    conserved hypothetical protein          15597313  Pseudomonas aeruginosa PA01
HD1017    conserved hypothetical protein          15214146  Pasteurella multocida
HD1029    conserved hypothetical protein          16767800  Salmonella typhimurium LT2
          (haloacid dehalogenase/epoxide
          hydrolase family)
HD1031    conserved hypothetical protein          15603488  Pasteurella multocida
HD1062    endonuclease IV                         24113546  Shigella flexneri 2a str.
                                                            301
HD1070    conserved hypothetical protein
HD1094    outer membrane peptidase                15793479  Neisseria meningitidis Z2491
HD1211    conserved hypothetical protein           8096198  Actinobacillus
                                                            actinomycetemcomitans
HD1218    conserved hypothetical protein          16760648  Salmonella enterica subsp.
          (possible secreted protein)                       enterica serovar Typhi
HD1278    serine protease                         19704758  Fusobacterium nucleatum
                                                            subsp. nucleatum ATCC 25586
HD1280    serine protease                         19704758  Fusobacterium nucleatum
                                                            subsp. nucleatum ATCC 25586
HD1282    formate-tetrahydrofolate ligase         15793607  Neisseria meningitidis Z2491
HD1319    possible integral membrane protein      15676164  Neisseria meningitidis MC58
HD1320    possible integral membrane protein      15676164  Neisseria meningitidis MC58
HD1321    probable integral membrane protein      15676163  Neisseria meningitidis MC58
HD1349    conserved hypothetical protein          15603533  Pasteurella multocida
HD1359    conserved hypothetical protein          22124631  Yersinia pestis KIM
HD1367    conserved hypothetical protein          16122278  Yersinia pestis
HD1384    N-acetylglutamate synthetase            15602693  Pasteurella multocida
HD1409    conserved hypothetical protein          15603314  Pasteurella multocida
HD1413    conserved hypothetical protein          15602616  Pasteurella multocida
HD1417    conserved hypothetical protein          22985782  Burkholderia fungorum
HD1432    conserved hypothetical protein           3372538  Actinobacillus
                                                            pleuropneumoniae
HD1437    conserved hypothetical protein          16122502  Yersinia pestis
HD1439    conserved hypothetical protein          16122501  Yersinia pestis
HD1443    conserved hypothetical protein          16122498  Yersinia pestis
HD1444    conserved hypothetical protein           9630757  Enterobacteria phage If1
HD1451    conserved hypothetical protein          16122498  Yersinia pestis
HD1452    conserved hypothetical protein           9630757  Enterobacteria phage If1
HD1519    conserved hypothetical protein          15794761  Neisseria meningitidis Z2491
HD1528    energy converting hydrogenase A          3746932  Salmonella typhi
          (eha) protein
HD1529    conserved hypothetical protein          16760398  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1530    conserved hypothetical protein          16760398  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1532    conserved hypothetical protein          15641803  Vibrio cholerae
HD1533    conserved hypothetical protein          15794165  Neisseria meningitidis Z2491
HD1538    conserved hypothetical protein          15676893  Neisseria meningitidis MC58
HD1547    conserved hypothetical protein          18466689  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1548    conserved hypothetical protein          16760402  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1552    conserved hypothetical protein          16767466  Salmonella typhimurium LT2
HD1553    conserved hypothetical protein          16760407  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1561    conserved hypothetical protein          16760414  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1565    conserved hypothetical protein          17545582  Ralstonia solanacearum
HD1567    conserved hypothetical protein          15837121  Xylella fastidiosa 9a5c
HD1574    conserved hypothetical protein          15837124  Xylella fastidiosa 9a5c
HD1580    conserved hypothetical protein          22995506  Xylella fastidiosa Dixon
HD1595    transcription regulator, GntR family    15603096  Pasteurella multocida
          homolog
HD1601    conserved hypothetical protein          15603300  Pasteurella multocida
HD1612    transposase                             21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD1614    possible prophage ps3 protein 01        19551563  Corynebacterium glutamicum
                                                            ATCC 13032
HD1616    transposase                             21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD1634    conserved hypothetical protein          15602118  Pasteurella multocida
HD1633    conserved hypothetical protein          15602118  Pasteurella multocida
HD1688    conserved hypothetical protein
HD1689    transposase                             21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD1695    transposase                             21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD1696    transposase fragment                    21243959  Xanthomonas axonopodis pv.
                                                            citri str. 306
HD1749    possible endonuclease V                 15602310  Pasteurella multocida
HD1779    conserved hypothetical protein          15602837  Pasteurella multocida
HD1805    MAF-like protein                        15603133  Pasteurella multocida
HD1833    UDP-N-acetyl-D-mannosaminuronic acid    16123990  Yersinia pestis
          transferase
HD1835    4-alpha-l-fucosyltransferase (TDP-      16123991  Yersinia pestis
          Fuc4NAc:lipidII transferase )
HD1836    4-alpha-l-fucosyltransferase (TDP-      16767202  Salmonella typhimurium LT2
          Fuc4NAc:lipidII transferase )
HD1837    lipopolysaccharide biosynthesis         16123993  Yersinia pestis
          protein, WZXE-like
HD1838    lipopolysaccharide biosynthesis         16131648  Escherichia coli K12
          protein, WZXE-like
HD1840    lipopolysaccharide biosynthesis         16762205  Salmonella enterica subsp.
          protein                                           enterica serovar Typhi
HD1841    lipopolysaccharide biosynthesis           421087  Escherichia coli
          protein
HD1842    UDP-N-acetyl-D-mannosaminuronic acid    16762209  Salmonella enterica subsp.
                                                            enterica serovar Typhi
HD1843    UDP-N-acetylglucosamine 2-epimerase     16123999  Yersinia pestis
HD1856    hypothetical protein
HD1860    carbohydrate transport protein SGAT     15602629  Pasteurella multocida
HD1861    conserved hypothetical protein          15602628  Pasteurella multocida
HD1891    drug resistance protein QACE            15600183  Pseudomonas aeruginosa PA01
HD1926    50S ribosomal protein L36               15676834  Neisseria meningitidis MC58
HD1970    insertion element IS1/IS150 protein     16128015  Escherichia coli K12
HD1971    insertion element IS1/IS150 protein       541133  Escherichia coli
HD2037    conserved hypothetical protein          15603408  Pasteurella multocida

Haemophilus influenzae with no similarity to known Haemophilus ducreyi proteins in GenBank.

Haemophilus influenzae proteins obtained from GenBank, accession NC_000907, were blasted against the Haemophilus ducreyi genome and a collection of H. influenzae sequences with no significant similarity (blast p-value > 1e-3) to H. ducreyi was compiled. Some of these sequences had no match to any GenBank entry and are not included below. However, a small number did have matches (blast p-value < 1e-6) and these are tabulated below. The first and second columns in the table record the GenBank ID and definition, or predicted function, of each H. influenzae protein. The third and fourth columns provide the GenBank ID and the associated species for one orthologous protein; when more than one ortholog was known, the one with the strongest match was recorded. The data in this table can change with growth of GenBank.

GenBank GI   Database Definition               GenBank GI  Nearest Neighbor
--------- ------------------------------------ ----------  ----------------------------

16272010  conserved hypothetical protein          15602936  Pasteurella multocida
16272015  conserved hypothetical protein           7592806  Actinobacillus
                                                            actinomycetemcomitans
16272020  conserved hypothetical protein          15602024  Pasteurella multocida
16272024  2-dehydro-3-deoxygluconokinase           1708627  Erwinia chrysanthemi
          (kdgK)
16272025  conserved hypothetical transmembrane    23467496  Haemophilus somnus 129PT
          protein
16272026  conserved hypothetical protein          23467497  Haemophilus somnus 129PT
16272027  zinc-type alcohol dehydrogenase         23467498  Haemophilus somnus 129PT
16272029  mannonate dehydratase (uxuA)            23467612  Haemophilus somnus 129PT
16272030  conserved hypothetical transmembrane    15602931  Pasteurella multocida
          protein
16272047  H. influenzae predicted coding          22973026  Chloroflexus aurantiacus
          region HI0073
16272048  H. influenzae predicted coding          22973025  Chloroflexus aurantiacus
          region HI0074
16272049  anaerobic ribonucleoside-               15602805  Pasteurella multocida
          triphosphate reductase (nrdD)
16272050  acyl-CoA thioesterase II (tesB)         15602435  Pasteurella multocida
16272051  H. influenzae predicted coding          23466872  Haemophilus somnus 129PT
          region HI0077
16272054  conserved hypothetical protein           3025201  Escherichia coli
16272059  D-lactate dehydrogenase,                15677533  Neisseria meningitidis MC58
          fermentative (ldhA)
16272060  cystathionine gamma-synthase (metB)     23467130  Haemophilus somnus 129PT
16272061  threonine synthase (thrC)               23466931  Haemophilus somnus 129PT
16272065  conserved hypothetical protein          23467345  Haemophilus somnus 129PT
16272067  conserved hypothetical protein          23467348  Haemophilus somnus 129PT
16272068  H. influenzae predicted coding          16766220  Salmonella typhimurium LT2
          region HI0094
16273631  Uncharacterized protein                 23467507  Haemophilus somnus 129PT
16272070  H. influenzae predicted coding          15794376  Neisseria meningitidis Z2491
          region HI0096
16272071  iron(III) ABC transporter,              11277490  Actinobacillus
          periplasmic-binding protein (hitA)                actinomycetemcomitans
16272078  heat shock protein (htpG)                1708336  Actinobacillus
                                                            actinomycetemcomitans
16272082  conserved hypothetical protein          15603759  Pasteurella multocida
16272086  H. influenzae predicted coding          22993195  Enterococcus faecium
          region HI0112
16272092  cystathionine beta-lyase (metC)         23466434  Haemophilus somnus 129PT
16272101  H. influenzae predicted coding          15602815  Pasteurella multocida
          region HI0134
16272111  glucose kinase, putative                15603577  Pasteurella multocida
16272113  conserved hypothetical protein          15603574  Pasteurella multocida
16272115  conserved hypothetical protein          15603572  Pasteurella multocida
16272117  H. influenzae predicted coding          15603878  Pasteurella multocida
          region HI0149
16272143  H. influenzae predicted coding          15601887  Pasteurella multocida
          region HI0178
16272147  sugar kinase, putative                  23467033  Haemophilus somnus 129PT
16272149  esterase                                15677171  Neisseria meningitidis MC58
16272150  alcohol dehydrogenase, class III        15677170  Neisseria meningitidis MC58
          (adhC)
16272151  transcriptional regulator, putative     15677169  Neisseria meningitidis MC58
16272153  glutamate dehydrogenase (gdhA)          23467136  Haemophilus somnus 129PT
16272178  type I restriction/modification         18765813  Helicobacter pylori
          specificity protein (hsdS)
16272179  conserved hypothetical protein          15596351  Pseudomonas aeruginosa PA01
16273673  Restriction enzyme type I helicase        135202  Escherichia coli
          subunit
16272181  H. influenzae predicted coding          24379662  Streptococcus mutans UA159
          region HI0220.2
16272186  rarD protein, putative                  22985849  Burkholderia fungorum
16272197  conserved hypothetical protein          15602994  Pasteurella multocida
16272203  H. influenzae predicted coding          15677384  Neisseria meningitidis MC58
          region HI0243
16272214  lipoprotein, putative                   15602915  Pasteurella multocida
16272233  H. influenzae predicted coding          15793413  Neisseria meningitidis Z2491
          region HI0275
16273633  Uncharacterized BCR                     23467936  Haemophilus somnus 129PT
16272241  aminotransferase                        23467710  Haemophilus somnus 129PT
16272245  potassium/copper-transporting           15677191  Neisseria meningitidis MC58
          ATPase, putative
16272246  H. influenzae predicted coding          15603756  Pasteurella multocida
          region HI0291
16272247  mercuric ion scavenger protein          15603756  Pasteurella multocida
          (merP)
16272248  transcriptional regulator, merR         15599972  Pseudomonas aeruginosa PA01
          family, putative
16272262  pyrroline-5-carboxylate reductase       23467192  Haemophilus somnus 129PT
          (proC)
16272274  virulence associated protein B          15967067  Sinorhizobium meliloti
          (vapB)
16272275  virulence associated protein C,         13449196  Shigella flexneri
          putative
16272279  H. influenzae predicted coding          23467058  Haemophilus somnus 129PT
          region HI0326
16272303  conserved hypothetical protein          15603039  Pasteurella multocida
16272306  thiamine biosynthesis protein,          15603128  Pasteurella multocida
          putative
16272307  transcriptional activator, putative     15603129  Pasteurella multocida
16272337  outer membrane protein                  15602573  Pasteurella multocida
16272340  H. influenzae predicted coding          15795071  Neisseria meningitidis Z2491
          region HI0391
16272341  O-antigen acetylase, putative           15795071  Neisseria meningitidis Z2491
16272354  pyridoxine kinase, putative             23467298  Haemophilus somnus 129PT
16272363  H. influenzae predicted coding            417403  Neisseria gonorrhoeae
          region HI0414
16272364  hydroxyethylthiazole kinase             15603127  Pasteurella multocida
16272365  phosphomethylpyrimidine kinase          23467776  Haemophilus somnus 129PT
          (thiD)
16272366  thiamin-phosphate pyrophosphorylase     15603125  Pasteurella multocida
16272369  H. influenzae predicted coding          23467523  Haemophilus somnus 129PT
          region HI0420
16272380  conserved hypothetical protein          15603600  Pasteurella multocida
16272384  competence protein D (comD)
16272385  competence protein C (comC)             23466963  Haemophilus somnus 129PT
16272394  PTS system, fructose-specific IIBC      16130105  Escherichia coli K12
          component (fruA)
16272398  virulence associated protein D           9507318  Plasmid pJD1
          (vapD)
16272399  conserved hypothetical protein           9507317  Plasmid pJD1
16272413  D-3-phosphoglycerate dehydrogenase      15603536  Pasteurella multocida
          (serA)
16272416  ATP phosphoribosyltransferase (hisG)    15603060  Pasteurella multocida
16272417  histidinol dehydrogenase (hisD)         15603063  Pasteurella multocida
16272418  histidinol-phosphate                    15603064  Pasteurella multocida
          aminotransferase (hisC)
16272421  phosphoribosylformimino-5-              15603068  Pasteurella multocida
          aminoimidazole carboxamide ribotide
          isomerase (hisA)
16272422  hisF cyclase (hisF)                     15603069  Pasteurella multocida
16272423  phosphoribosyl-AMP cyclohydrolase /     15603071  Pasteurella multocida
          phosphoribosyl-ATP
          pyrophosphohydrolase (hisIE)
16272435  H. influenzae predicted coding          15602923  Pasteurella multocida
          region HI0487
16272439  conserved hypothetical protein           1197032  Yersinia enterocolitica
16273634  Acid phosphatase (class B)              18092533  Klebsiella pneumoniae
16272445  high affinity ribose transport          15602021  Pasteurella multocida
          protein (rbsD)
16272447  D-ribose ABC transporter, permease      15602019  Pasteurella multocida
          protein (rbsC)
16272451  conserved hypothetical transmembrane    15603123  Pasteurella multocida
          protein
16272455  tellurite resistance protein (tehA)     15603452  Pasteurella multocida
16272456  Type II restriction endonuclease
          (HindIIR)
16272457  modification methylase (hindIIM)        15669894  Methanocaldococcus
                                                            jannaschii
16272465  conserved hypothetical protein          18309641  Clostridium perfringens
16272466  conserved hypothetical protein          15603158  Pasteurella multocida
16272479  urease accessory protein (ureH)          3915211  Actinobacillus
                                                            pleuropneumoniae
16272480  urease accessory protein (ureG)          3915210  Actinobacillus
                                                            pleuropneumoniae
16272481  urease accessory protein (ureF)          3915209  Actinobacillus
                                                            pleuropneumoniae
16272483  urease, alpha subunit (ureC)             3915207  Actinobacillus
                                                            pleuropneumoniae
16272484  urease, beta subunit (ureB)              3915206  Actinobacillus
                                                            pleuropneumoniae
16272485  urease, gamma subunit (ureA)             3915205  Actinobacillus
                                                            pleuropneumoniae
16272496  H. influenzae predicted coding          15677383  Neisseria meningitidis MC58
          region HI0552
16272498  H. influenzae predicted coding          23054063  Geobacter metallireducens
          region HI0554
16272528  hydrolase                               15603165  Pasteurella multocida
16272529  H. influenzae predicted coding          15603164  Pasteurella multocida
          region HI0585
16272530  H. influenzae predicted coding          15603164  Pasteurella multocida
          region HI0586
16272531  peptidase E (pepE)                      20139142  Pasteurella multocida
16272532  N-carbamyl-L-amino acid                 15602025  Pasteurella multocida
          amidohydrolase
16272535  ornithine decarboxylase (speF)          15602671  Pasteurella multocida
16272536  H. influenzae predicted coding          15602670  Pasteurella multocida
          region HI0592
16272538  carbamate kinase (arcC)                 15600366  Pseudomonas aeruginosa PA01
16273657  Uncharacterized membrane protein        21397559  Bacillus anthracis str.
                                                            A2012
16272552  L-fucose permease (fucP)                23467418  Haemophilus somnus 129PT
16272554  fucose operon protein (fucU)            23467415  Haemophilus somnus 129PT
16272556  L-fucose isomerase (fucI)               23467417  Haemophilus somnus 129PT
16272560  glp protein, putative                   23467949  Haemophilus somnus 129PT
16272573  sigma-E factor regulatory protein       15603652  Pasteurella multocida
          (rseB)
16272576  H. influenzae predicted coding          15603282  Pasteurella multocida
          region HI0633
16272588  lysophospholipase L2 (pldB)             15603496  Pasteurella multocida
16272590  transport protein, putative             15603618  Pasteurella multocida
16272591  modulator of drug activity B (mdaB)     15793590  Neisseria meningitidis Z2491
16272597  DNA-3-methyladenine glycosidase I       15603466  Pasteurella multocida
          (tagI)
16272602  H. influenzae predicted coding          15901010  Streptococcus pneumoniae
          region HI0659                                     TIGR4
16272603  H. influenzae predicted coding          15901009  Streptococcus pneumoniae
          region HI0660                                     TIGR4
16272606  H. influenzae predicted coding          24371663  Shewanella oneidensis MR-1
          region HI0665
16272607  H. influenzae predicted coding          24371663  Shewanella oneidensis MR-1
          region HI0666
16272609  glpX protein (glpX)                     15603347  Pasteurella multocida
16272619  H. influenzae predicted coding          15603177  Pasteurella multocida
          region HI0677
16272622  rarD protein, putative                  15603146  Pasteurella multocida
16272624  ketol-acid reductoisomerase (ilvC)      15603149  Pasteurella multocida
16272651  conserved hypothetical protein          23467332  Haemophilus somnus 129PT
16272662  conserved hypothetical protein          15603362  Pasteurella multocida
16272678  acetohydroxy acid synthase II,          23467934  Haemophilus somnus 129PT
          putative
16272679  dihydroxyacid dehydratase (ilvD)        23466558  Haemophilus somnus 129PT
16272683  H. influenzae predicted coding
          region HI0742
16272712  acetyl-CoA acetyltransferase (atoB)     16130161  Escherichia coli K12
16272713  short-chain fatty acids transporter     16130160  Escherichia coli K12
          (atoE)
16272714  acetate CoA-transferase, beta           16130159  Escherichia coli K12
          subunit (atoA)
16272715  acetate CoA-transferase, alpha          16130158  Escherichia coli K12
          subunit
16272728  H. influenzae predicted coding          23475383  Desulfovibrio desulfuricans
          region HI0787                                     G20
16273659  Arylsulfatase regulator (Fe-S           15603543  Pasteurella multocida
          oxidoreductase)
16272759  aldose 1-epimerase (galM)               15602899  Pasteurella multocida
16272760  galactokinase (galK)                    15602900  Pasteurella multocida
16272761  galactose-1-phosphate                   15602901  Pasteurella multocida
          uridylyltransferase (galT)
16272763  galactose ABC transporter,              15602903  Pasteurella multocida
          periplasmic-binding protein (mglB)
16272765  galactoside ABC transporter,            15602905  Pasteurella multocida
          permease protein (mglC)
16272771  trp operon repressor (trpR)             15602190  Pasteurella multocida
16272795  conserved hypothetical protein          16766537  Salmonella typhimurium LT2
16272798  conserved hypothetical protein          15603586  Pasteurella multocida
16272806  H. influenzae predicted coding           7592807  Actinobacillus
          region HI0866                                     actinomycetemcomitans
16272813  undecaprenyl-phosphate                  12025472  Actinobacillus
          galactosephosphotransferase (rfbP)                pleuropneumoniae
16272815  H. influenzae predicted coding          15603728  Pasteurella multocida
          region HI0874
16272826  H. influenzae predicted coding          15676213  Neisseria meningitidis MC58
          region HI0886
16272829  serine hydroxymethyltransferase         15602090  Pasteurella multocida
          (serine methylase) (glyA)
16272838  glutamate 5-kinase (gamma-glutamyl      17380203  Pasteurella multocida
          kinase) (proB)
16272862  conserved hypothetical protein          21674545  Chlorobium tepidum TLS
16272863  H. influenzae predicted coding          15602964  Pasteurella multocida
          region HI0926
16272865  catalase (hktE)                         15676142  Neisseria meningitidis MC58
16272866  conserved hypothetical protein          23042219  Trichodesmium erythraeum
                                                            IMS101
16272868  H. influenzae predicted coding          15677809  Neisseria meningitidis MC58
          region HI0931
16272877  H. influenzae predicted coding          15602828  Pasteurella multocida
          region HI0940
16272885  virulence associated protein C          22954478  Nitrosomonas europaea
          (vapC)
16272886  conserved hypothetical protein          22954477  Nitrosomonas europaea
16272903  H. influenzae predicted coding          15602938  Pasteurella multocida
          region HI0966
16272904  H. influenzae predicted coding
          region HI0967
16272910  H. influenzae predicted coding          23467713  Haemophilus somnus 129PT
          region HI0973
16273686  Predicted outer membrane protein        15603380  Pasteurella multocida
16272913  conserved hypothetical protein          15603340  Pasteurella multocida
16272914  conserved hypothetical protein          15603340  Pasteurella multocida
16272915  cell filamentation protein (fic)        15676179  Neisseria meningitidis MC58
16272925  3-isopropylmalate dehydrogenase         23466510  Haemophilus somnus 129PT
          (beta-IPM dehydrogenase) (leuB)
16272926  3-isopropylmalate dehydratase, alpha    23466511  Haemophilus somnus 129PT
          subunit (leuC)
16272927  3-isopropylmalate dehydratase small     23466512  Haemophilus somnus 129PT
          subunit (leuD)
16272933  transferrin-binding protein 2            3523137  Moraxella catarrhalis
          precursor (tbp2)
16273680  Predicted outer membrane protein        15603380  Pasteurella multocida
16272945  3-hydroxyisobutyrate dehydrogenase,     23467506  Haemophilus somnus 129PT
          putative
16272946  conserved hypothetical protein          23467505  Haemophilus somnus 129PT
16272948  conserved hypothetical protein          23467503  Haemophilus somnus 129PT
16272951  H. influenzae predicted coding          15603227  Pasteurella multocida
          region HI1016
16272962  conserved hypothetical protein          23466780  Haemophilus somnus 129PT
16272964  conserved hypothetical transmembrane    15603119  Pasteurella multocida
          protein
16272965  conserved hypothetical protein          15603121  Pasteurella multocida
16272966  transcriptional regulator, putative     16131445  Escherichia coli K12
16272971  conserved hypothetical protein          15601903  Pasteurella multocida
16272972  conserved hypothetical protein          16799231  Listeria innocua
16272973  type II restriction enzyme, putative      135224  Herpetosiphon aurantiacus
16272974  modification methylase                  23130038  Nostoc punctiforme
16273661  Methionine synthase I, cobalamin-       15640417  Vibrio cholerae
          binding subunit
16272977  anaerobic dimethyl sulfoxide            15603621  Pasteurella multocida
          reductase, chain C (dmsC)
16272980  H. influenzae predicted coding          15603076  Pasteurella multocida
          region HI1048
16272981  mercuric ion transport protein          15603077  Pasteurella multocida
          (merT)
16272982  mercuric ion scavenger protein          15603078  Pasteurella multocida
          (merP)
16272984  transcriptional regulator, araC         15595761  Pseudomonas aeruginosa PA01
          family, putative
16272985  conserved hypothetical protein          15677440  Neisseria meningitidis MC58
16272986  conserved hypothetical protein           3928003  Neisseria meningitidis
16272989  H. influenzae predicted coding          15794482  Neisseria meningitidis Z2491
          region HI1058
16273002  conserved hypothetical protein          15602635  Pasteurella multocida
16273681  Aminotransferase                        23954287  Escherichia coli
16273036  D-xylose ABC transporter,               23467678  Haemophilus somnus 129PT
          periplasmic-binding protein (xylF)
16273037  xylose isomerase (xylA)                 23467679  Haemophilus somnus 129PT
16273051  H. influenzae predicted coding          15601992  Pasteurella multocida
          region HI1126
16273055  conserved hypothetical protein          15601998  Pasteurella multocida
16273084  ferrochelatase (hemH)                   15602654  Pasteurella multocida
16273086  conserved hypothetical protein          21674545  Chlorobium tepidum TLS
16273090  histidinol-phosphate                    23467703  Haemophilus somnus 129PT
          aminotransferase (hisH)
16273098  opacity protein, putative               15602890  Pasteurella multocida
16273104  H. influenzae predicted coding          23467151  Haemophilus somnus 129PT
          region HI1182
16273105  H. influenzae predicted coding          23467151  Haemophilus somnus 129PT
          region HI1183
16273115  branched-chain-amino-acid               15602431  Pasteurella multocida
          transaminase (ilvE)
16273116  succinyl-CoA synthetase, beta           23467321  Haemophilus somnus 129PT
          subunit (sucC)
16273117  succinyl-CoA synthetase, alpha          15602146  Pasteurella multocida
          subunit (sucD)
16273134  thiol:disulfide interchange protein     15602058  Pasteurella multocida
          (dsbA)
16273153  methylglyoxal synthase (mgsA)           23467127  Haemophilus somnus 129PT
16273154  H. influenzae predicted coding          15602600  Pasteurella multocida
          region HI1235
16273155  conserved hypothetical protein          15602600  Pasteurella multocida
16273158  gamma-glutamyl phosphate reductase      23466492  Haemophilus somnus 129PT
          (proA)
16273159  conserved hypothetical transmembrane    23466491  Haemophilus somnus 129PT
          protein
16273169  H. influenzae predicted coding          15601154  Vibrio cholerae
          region HI1250
16273170  virulence associated protein A          16128467  Escherichia coli K12
          (vapA)
16273181  homoserine acetyltransferase (met2)     23466998  Haemophilus somnus 129PT
16273183  conserved hypothetical protein          15602552  Pasteurella multocida
16273184  H. influenzae predicted coding
          region HI1266
16273185  H. influenzae predicted coding          15603172  Pasteurella multocida
          region HI1268
16273186  H. influenzae predicted coding
          region HI1269
16273682  ABC-type transport                      24112590  Shigella flexneri 2a str.
                                                            301
16273195  conserved hypothetical protein          24111927  Shigella flexneri 2a str.
                                                            301
16273199  type I restriction enzyme (hsdR)         2126351  Mannheimia haemolytica
16273200  type I restriction/modification          2126352  Mannheimia haemolytica
          specificity protein (hsdS)
16273209  nuclease, putative                      15602746  Pasteurella multocida
16273663  dGTP triphosphohydrolase                15602743  Pasteurella multocida
16273219  conserved hypothetical protein          15602592  Pasteurella multocida
16273221  conserved hypothetical protein          15602585  Pasteurella multocida
16273228  H. influenzae predicted coding          15602463  Pasteurella multocida
          region HI1316
16273229  conserved hypothetical protein          15602576  Pasteurella multocida
16273236  H. influenzae predicted coding          15602538  Pasteurella multocida
          region HI1326
16273239  H. influenzae predicted coding           4102010  Haemophilus paragallinarum
          region HI1328.1
16273240  IS1016-V6 protein (IS1016-V6)            4102010  Haemophilus paragallinarum
16273266  4-alpha-glucanotransferase (malQ)       15602405  Pasteurella multocida
16273267  1,4-alpha-glucan branching enzyme       15602406  Pasteurella multocida
          (glgB)
16273268  glycogen operon protein (glgX)          23467253  Haemophilus somnus 129PT
16273270  glycogen synthase (glgA)                15602409  Pasteurella multocida
16273271  glycogen phosphorylase (glgP)           15602410  Pasteurella multocida
16273276  acyl carrier protein                    16122547  Yersinia pestis
          phosphodiesterase (acpD)
16273280  molybdenum-pterin binding protein       15602081  Pasteurella multocida
          (mopI)
16273286  H. influenzae predicted coding          23040257  Trichodesmium erythraeum
          region HI1375                                     IMS101
16273649  ABC-type phosphate transport system,    15602301  Pasteurella multocida
          periplasmic component
16273298  H. influenzae predicted coding          23028688  Microbulbifer degradans 2-40
          region HI1388.1
16273299  anthanilate                             15602446  Pasteurella multocida
          phosphoribosyltransferase (trpD)
16273300  indole-3-glycerol phosphate synthase    15602445  Pasteurella multocida
          / phosphoribosylanthranilate
          isomerase (trpC)
16273665  Hydrogenase maturation factor           15803535  Escherichia coli O157:H7
                                                            EDL933
16273302  modification methylase (hindIIIM)        3687316  Lactococcus lactis
16273303  Type II restriction endonuclease         1213326  Escherichia coli
          (hindIIIR)
16273305  H. influenzae predicted coding          15894770  Clostridium acetobutylicum
          region HI1395
16273311  H. influenzae predicted coding          23467105  Haemophilus somnus 129PT
          region HI1402
16273312  H. influenzae predicted coding           9628637  Haemophilus phage HP1
          region HI1403
16273314  H. influenzae predicted coding          21397579  Bacillus anthracis str.
          region HI1406                                     A2012
16273316  H. influenzae predicted coding          15838172  Xylella fastidiosa 9a5c
          region HI1409
16273317  H. influenzae predicted coding          16760783  Salmonella enterica subsp.
          region HI1410                                     enterica serovar Typhi
16273318  terminase, small subunit                15603642  Pasteurella multocida
16273319  conserved hypothetical protein          23467093  Haemophilus somnus 129PT
16273322  H. influenzae predicted coding           5725186  Pseudomonas aeruginosa
          region HI1415
16273324  H. influenzae predicted coding          23468087  Haemophilus somnus 129PT
          region HI1418
16273325  H. influenzae predicted coding          17229894  Nostoc sp. PCC 7120
          region HI1419
16273326  H. influenzae predicted coding          23105581  Azotobacter vinelandii
          region HI1420
16273331  conserved hypothetical protein          15602534  Pasteurella multocida
16273332  H. influenzae predicted coding          15677329  Neisseria meningitidis MC58
          region HI1427
16273336  tryptophan synthase beta subunit        15602443  Pasteurella multocida
          (trpB)
16273337  tryptophan synthase alpha subunit       15602442  Pasteurella multocida
          (trpA)
16273351  5,10 methylenetetrahydrofolate          15602100  Pasteurella multocida
          reductase (metF)
16273358  H. influenzae predicted coding          23467271  Haemophilus somnus 129PT
          region HI1452
16273362  H. influenzae predicted coding          24372580  Shewanella oneidensis MR-1
          region HI1456
16273363  opacity protein, putative               15602890  Pasteurella multocida
16273651  Outer membrane receptor protein         15595349  Pseudomonas aeruginosa PA01
16273375  iron chelatin ABC transporter,          15603013  Pasteurella multocida
          permease protein, putative
16273376  iron chelatin ABC transporter,          15603014  Pasteurella multocida
          periplasmic-binding protein,
          putative
16273377  molybdenum transport system protein     15602976  Pasteurella multocida
          (modD)
16273412  conserved hypothetical protein           9633529  Enterobacteria phage Mu
16273413  sheath protein gpL (muL)                24374234  Shewanella oneidensis MR-1
16273414  conserved hypothetical protein          15834234  Escherichia coli O157:H7
16273415  conserved hypothetical protein           9633532  Enterobacteria phage Mu
16273417  64 kDa virion protein (muN)              9633534  Enterobacteria phage Mu
16273652  43 kD tail protein                       9633535  Enterobacteria phage Mu
16273418  H. influenzae predicted coding           9633536  Enterobacteria phage Mu
          region HI1518
16273419  H. influenzae predicted coding           9633537  Enterobacteria phage Mu
          region HI1519
16273420  conserved hypothetical protein           9633538  Enterobacteria phage Mu
16273421  conserved hypothetical protein          24374244  Shewanella oneidensis MR-1
16273422  H. influenzae predicted coding          15834243  Escherichia coli O157:H7
          region HI1522
16273438  lic-1 operon protein (licB)             23467405  Haemophilus somnus 129PT
16273440  lic-1 operon protein (licD)             23467407  Haemophilus somnus 129PT
16273444  NAD(P)H oxidoreductase, putative        15602752  Pasteurella multocida
16273456  2-hydroxyacid dehydrogenase             15602424  Pasteurella multocida
16273460  H. influenzae predicted coding          23467314  Haemophilus somnus 129PT
          region HI1560
16273464  H. influenzae predicted coding          15602332  Pasteurella multocida
          region HI1564
16273472  IS1016-V6 protein, putative              4102010  Haemophilus paragallinarum
16273478  acetolactate synthase III small         15602734  Pasteurella multocida
          subunit (ilvH)
16273479  acetolactate synthase III large         15602735  Pasteurella multocida
          subunit (ilvI)
16273488  conserved hypothetical protein          15602116  Pasteurella multocida
16273489  H. influenzae predicted coding          15602075  Pasteurella multocida
          region HI1599
16273490  H. influenzae predicted coding          15602076  Pasteurella multocida
          region HI1600
16273491  H. influenzae predicted coding          15602077  Pasteurella multocida
          region HI1601
16273492  H. influenzae predicted coding          15602078  Pasteurella multocida
          region HI1602
16273501  sugar fermentation stimulation          15602619  Pasteurella multocida
          protein (sfsA)
16273666  ABC-type cobalt transport system,        5733707  Actinobacillus
          permease component, fragment                      pleuropneumoniae
16273509  H. influenzae predicted coding           5733707  Actinobacillus
          region HI1620                                     pleuropneumoniae
16273510  conserved hypothetical protein           5733706  Actinobacillus
                                                            pleuropneumoniae
16273512  H. influenzae predicted coding           5733704  Actinobacillus
          region HI1624                                     pleuropneumoniae
16273513  mercuric resistance operon              23060962  Pseudomonas fluorescens
          regulatory protein (merR2)
16273514  H. influenzae predicted coding          15602233  Pasteurella multocida
          region HI1625
16273525  phosphoenolpyruvate carboxylase         15602411  Pasteurella multocida
          (ppc)
16273532  conserved hypothetical protein          15677808  Neisseria meningitidis MC58
16273537  D-lactate dehydrogenase (dld)           23466759  Haemophilus somnus 129PT
16273552  H. influenzae predicted coding          15602136  Pasteurella multocida
          region HI1665
16273553  conserved hypothetical protein          15602136  Pasteurella multocida
16273554  conserved hypothetical protein          23467002  Haemophilus somnus 129PT
16273556  conserved hypothetical protein          23467004  Haemophilus somnus 129PT
16273564  conserved hypothetical protein          16132031  Escherichia coli K12
16273568  conserved hypothetical protein          23467128  Haemophilus somnus 129PT
16273581  molybdenum transport protein (modE)     15602611  Pasteurella multocida
16273585  lipopolysaccharide biosynthesis          1073729  Yersinia enterocolitica
          protein
16273586  lipopolysaccharide biosynthesis         15602373  Pasteurella multocida
          protein, putative
16273589  5-                                      23466718  Haemophilus somnus 129PT
          methyltetrahydropteroyltriglutamate-
          homocysteine methyltransferase
16273593  high-affinity choline transport         15677144  Neisseria meningitidis MC58
          protein (betT)
16273596  conserved hypothetical protein          16761952  Salmonella enterica subsp.
                                                            enterica serovar Typhi
16273604  H. influenzae predicted coding          15602579  Pasteurella multocida
          region HI1718
16273606  conserved hypothetical protein          22993195  Enterococcus faecium
16273607  transposase, putative                   22977297  Ralstonia metallidurans
16273656  Uncharacterized conserved protein,      23467492  Haemophilus somnus 129PT
          homolog of lactam utilization
          protein B
16273615  conserved hypothetical protein          15793062  Neisseria meningitidis Z2491
16273616  conserved hypothetical protein          23467494  Haemophilus somnus 129PT
16273669  adhesin homolog                          7228588  Neisseria meningitidis
16273621  conserved hypothetical protein          23467022  Haemophilus somnus 129PT
16273622  conserved hypothetical protein          15602287  Pasteurella multocida




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