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Chlamydia pneumoniae




Three different base composition analyses were performed on the coding regions in the Chlamydia pneumoniae genome: G+C content (%), genome signature, and codon bias. The genome signature and codon bias were determined according to methods established by Samuel Karlin (Trends Microbiol. 2001 Jul;9(7):335-43.). The codon bias of each gene was calculated against both the whole genome and the set of ribosomal proteins. Ribosomal proteins in microbial genomes are typically encoded by genes that have a codon usage distinct from the genome mean. Ribosomal proteins and genes with codon usage patterns similar to them have been linked to gene expression (Karlin S, Mrazek J. J Bacteriol. 2000 Sep;182(18):5238-50.). Genes that deviate from the genome, but not the set of ribosomal proteins are considered putative highly expressed, whereas genes that deviate from both the genome mean and the ribosomal proteins are considered putative alien genes. Each of these analyses is displayed below as well as a measure of deviation from the genome mean value. The table is ordered by gene ID numbers, which reflect genome position. Thus, gene clusters with deviant base composition can be identified. These clusters may have been the result of a lateral gene transfer event and are catalogued in the Genomic Island Table. Genes that are 3 or more standard deviations from the mean in any of the base composition metrics are catalogued the Deviant Gene Table.




Metric Mean Value Standard Deviation
 G+C Content (%) 41.34   2.81  
 Genome Signature 113   55  
 Codon Bias (Genome) 334   110  
 Codon Bias (Ribosomal) 365   102  


Standard deviations are indicated by a number of stars:
*       difference from mean is greater than 1.5  standard deviations
**      difference from mean is greater than 2    standard deviations
***     difference from mean is greater than 3    standard deviations
****    difference from mean is greater than 4    standard deviations
*****   difference from mean is greater than 5    standard deviations





 Gene       G+C        Genome      Codon Bias   Codon Bias     Database
  ID 	  Content(%)  Signature     (Genome)    (Ribosomal)    Definition
-------   -------    -----------   ----------   -----------    --------------------
CPn0001    40.07        154           550 *         509        Chlamydia-specific hypothetical protein
CPn0002    38.56        140           430           473        Glu-tRNA Gln amidotransferase subunit C
CPn0003    44.08         84           254           321        Glu-tRNA Gln amidotransferase subunit A
CPn0004    43.01         89           280           356        Glu-tRNA Gln amidotransferase subunit B
CPn0005    41.10         65           171           255        outer membrane protein G
CPn0006    51.28 ***    258 **        710 ***       808 ****   hypothetical protein
CPn0007    40.93         86           243           314        conserved hypothetical protein
CPn0008    43.28        154           451           525 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0009    41.21        125           324           405        conserved hypothetical protein
CPn0010    45.53        156           492           555 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0010    43.33        143           439           523 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0011    38.15         91           271           265        Chlamydia pneumoniae-specific hypothetical protein
CPn0012    38.42        141           266           356        conserved hypothetical protein
CPn0013    43.31         60           219           269        outer membrane protein G
CPn0020    42.96         79           254           384        Chlamydia-specific hypothetical protein (predicted
                                                               OMP)
CPn0021    44.23         77           240           372        Chlamydia-specific hypothetical protein (predicted
                                                               OMP)
CPn0022    40.27         88           321           350        MAF protein (MAF/YMDE/YCEF related)
CPn0023    41.12         84           224           282        ABC transporter protein (ATPASE)
CPn0024    42.07         56           270           338        integrase/recombinase XERC-related
CPn0025    43.18         86           320           320        conserved hypothetical protein (probable hydrolase)
CPn0026    41.75        109           330           382        Chlamydia-specific hypothetical protein (basic)
CPn0027    40.77         39           177           238        Lon ATP-dependent protease
CPn0028    36.51 *      117           264           329        hypothetical protein
CPn0029    37.67        120           429           511        hypothetical protein
CPn0030    41.43        110           301           352        O-sialoglycoprotein endopeptidase, predicted
CPn0031    40.68        296 ***       534 *         548 *      30S ribosomal protein S21
CPn0032    43.85         83           268           197        heat shock protein J
CPn0033    45.16         57           198           261        2-oxoisovalerate dehydrogenase alpha and beta
                                                               subunits
CPn0034    41.49         68           226           315        hypothetical protein
CPn0035    43.92         90           273           362        conserved hypothetical protein (basic)
CPn0036    40.35         90           318           353        Chlamydia-specific hypothetical protein
CPn0037    40.98        139           522 *         567 *      phosphocarrier protein HPR
CPn0038    43.01         79           205           308        PEP protein phosphotransferase
CPn0039    41.92        146           489           439        YbaB family hypothetical protein
CPn0040    40.71         87           188           239        DNA polymerase III subunits gamma and tau
CPn0041    43.33        129           445           531 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0042    40.74        156           460           515        Chlamydia pneumoniae-specific hypothetical protein
CPn0043    43.18         90           310           401        Chlamydia pneumoniae-specific hypothetical protein
CPn0044    38.57        211 *         464           535 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0045    43.30        116           322           414        Chlamydia pneumoniae-specific hypothetical protein
CPn0046    39.62        203 *         484           555 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0047    33.33 **     217 *         549 *         551 *      hypothetical protein
CPn0048    41.88         45           192           296        conserved hypothetical protein
CPn0049    39.75        123           463           505        hypothetical protein
CPn0050    39.94        206 *         421           490        hypothetical protein
CPn0051    41.49        195           521 *         578 **     hypothetical protein
CPn0052    45.39        126           298           383        porphobilinogen deaminase
CPn0053    43.83         84           214           301        RADA-related DNA repair protein (Sms)
CPn0054    43.00         74           280           385        ribonuclease III, dsRNA-specific
CPn0055    40.86        106           357           425        Chlamydia-specific hypothetical protein
CPn0056    43.07         69           238           316        phosphomannomutase
CPn0057    39.90        121           250           296        superoxide dismutase precursor
CPn0058    42.93         61           287           326        acetyl-CoA carboxylase subunit beta
CPn0059    45.66 *       82           441           403        deoxyuridine 5'-triphosphate nucleotidohydrolase
                                                               (dUTPase)
CPn0060    41.51         89           419           407        nitrogen regulatory IIa domain protein (PTS
                                                               IIA)(phosphotransferase)
CPn0061    39.09        111           355           362        nitrogen regulatory IIa protein
CPn0062    40.98        147           275           216        Chlamydia-specific hypothetical protein
CPn0063    36.48 *      144           629 **        597 **     hypothetical protein
CPn0064    46.15 *       93           539 *         561 *      hypothetical protein
CPn0065    41.71         79           213           294        Chlamydia-specific hypothetical protein
CPn0066    42.85        104           177           234        Chlamydia-specific conserved hypothetical protein
CPn0067    39.31         54           206           235        Chlamydia pneumoniae-specific hypothetical protein
CPn0068    36.11 *      144           341           341        Chlamydia pneumoniae-specific hypothetical protein
                                                               (acidic)
CPn0069    44.50        124           251           317        Chlamydia pneumoniae-specific hypothetical protein
CPn0070    36.21 *      227 **        555 **        590 **     hypothetical protein
CPn0071    36.00 *       69           428           417        Chlamydia-specific hypothetical protein
CPn0072    37.80        107           336           306        Chlamydia-specific hypothetical protein
CPn0073    42.79        207 *         505 *         493        translation initiation factor IF-1
CPn0074    43.12        121           426           382        elongation factor Tu
CPn0075    32.54 ***    254 **        485           450        Chlamydia-specific hypothetical protein (basic)
                                                               (possible preprotein translocase secE sequence)
CPn0076    38.07        128           309           324        transcription antiterminator
CPn0077    38.26        188           376           331        50S ribosomal protein L11
CPn0078    38.63        103           311           263        50S ribosomal protein L1
CPn0079    40.35        109           400           397        50S ribosomal protein L10
CPn0080    38.72        255 **        496           346        50S ribosomal protein L7/L12
CPn0081    40.22         76           211           196        DNA-directed RNA polymerase beta subunit
CPn0082    40.44         86           220           181        DNA-directed RNA polymerase beta prime chain
CPn0083    38.82        122           268           242        transaldolase
CPn0084    33.33 **     137           358           332        Chlamydia-specific hypothetical protein (possible
                                                               ferrodoxin)
CPn0085    38.98        127           307           346        Chlamydia-specific hypothetical protein (basic)
CPn0086    40.83        177           318           323        possible ATP synthase subunit E
CPn0087    36.70 *      108           203           246        Chlamydia-specific hypothetical protein (possibly
                                                               related to V-ATP synthase)
CPn0088    42.00         71           213           240        ATP synthase subunit A
CPn0089    40.09         56           282           262        ATP synthase beta chain
CPn0090    39.68        116           374           448        probable ATP synthase subunit D
CPn0091    39.69         70           221           276        probable vacuolar ATPase subunit I
CPn0092    43.66        183           421           447        vacuolar ATP synthase subunit K
CPn0093    43.53        120           419           481        Chlamydia-specific hypothetical protein
CPn0094    42.47         47           218           275        valyl-tRNA synthetase
CPn0095    40.62         83           208           283        probable serine/threonine kinase
CPn0096    42.26         92           197           316        excinuclease ABC subunit A
CPn0097    42.61         89           287           306        pyruvate kinase
CPn0098    39.03         91           225           297        lipid A biosynthesis lauroyl acyltransferase
CPn0099    40.22        219 *         581 **        620 **     hypothetical protein
CPn0100    36.34 *       93           230           281        Chlamydia-specific hypothetical protein
CPn0101    41.13         76           348           372        conserved hypothetical protein
CPn0102    38.08         98           241           200        cytochrome oxidase D subunit I
CPn0103    39.61        109           271           295        cytochrome oxidase D subunit II
CPn0104    40.65         68           227           277        Chlamydia-specific hypothetical protein
CPn0105    39.54        136           284           290        Chlamydia-specific hypothetical protein
CPn0106    40.33         49           231           290        probable PhoH-like protein (ATPase)
CPn0107    44.32         99           328           365        Chlamydia-specific hypothetical protein
CPn0108    39.78        113           333           364        Chlamydia-specific hypothetical protein
CPn0109    39.34         61           176           163        isoleucyl-tRNA synthetase
CPn0110    40.55         52           214           245        signal peptidase I
CPn0111    41.67        161           321           354        Chlamydia-specific hypothetical protein
CPn0112    35.15 **     222 *         464           380        50S ribosomal protein L31
CPn0113    40.69         70           236           291        peptide chain release factor I
CPn0114    41.52         81           352           397        hypothetical adenine-specific methylase
CPn0115    38.68        112           236           245        signal recognition particle GTPase protein (SRP) (54
                                                               kDa)
CPn0116    41.11        223 *         410           395        30S ribosomal S16 protein
CPn0117    41.25         70           314           348        tRNA (guanine N-1)-methyltransferase
CPn0118    41.53        168           515 *         468        50S ribosomal protein L19
CPn0119    40.47         96           363           388        ribonuclease HII
CPn0120    40.78         97           413           392        guanylate kinase
CPn0121    36.73 *      159           419           411        Chlamydia-specific hypothetical protein
CPn0122    39.98         78           262           279        methionyl-tRNA synthetase
CPn0123    39.65         73           247           325        exodeoxyribonuclease V alpha subunit
CPn0124    39.30        120           338           375        Chlamydia pneumoniae-specific hypothetical protein
CPn0125    39.38        179           428           499        Chlamydia pneumoniae-specific hypothetical protein
CPn0126    39.78        112           288           347        conserved hypothetical protein
CPn0127    44.05        103           430           521 *      conserved hypothetical protein (possible integral
                                                               membrane protein)
CPn0128    45.51        122           427           454        biotin-protein ligase
CPn0129    37.14        107           421           492        Chlamydia-specific hypothetical protein
CPn0130    37.75        141           577 **        626 **     hypothetical protein
CPn0131    38.07         37           406           405        hypothetical protein
CPn0132    38.34         76           364           388        hypothetical protein
CPn0133    43.02         72           474           541 *      Chlamydia-specific hypothetical protein
CPn0134    41.35        148           430           382        60 kD chaperonin (heatshock protein GroEL)
CPn0135    42.07        116           443           414        10 kD chaperonin, GroES
CPn0136    40.41         63           310           335        oligoendopeptidase F (a metalloprotease)
CPn0137    44.05         78           353           419        conserved hypothetical protein; ACR family
CPn0138    43.39         88           369           425        glutamate-1-semialdehyde 2,1-aminomutase
CPn0139    40.74        117           466           509        conserved hypothetical protein
CPn0140    38.32        106           471           437        conserved hypothetical protein
CPn0141    40.80         96           329           341        ribose 5-phosphate isomerase
CPn0142    33.69 **      94           530 *         541 *      hypothetical protein
CPn0143    39.47         60           241           239        conserved hypothetical protein
CPn0144    40.37         82           213           255        ClpB-related ATP-dependent protease
CPn0145    39.47         70           272           325        Chlamydia-specific hypothetical protein
CPn0146    44.44        113           482           450        hypothetical protein
CPn0147    46.22 *      164           455           472        hypothetical protein
CPn0148    40.65         62           240           282        probable serine/threonine kinase
CPn0149    41.43         72           183           227        DNA ligase (NAD dependent
CPn0150    40.77         51           185           241        conserved hypothetical protein
CPn0151    39.18         59           226           296        monooxygenase
CPn0152    42.06         83           312           329        conserved hypothetical protein (possible a/b
                                                               hydrolase fold member)
CPn0153    42.63         51           124           216        leucyl-tRNA synthetase
CPn0154    39.65        105           255           240        3-deoxy-D-manno-2-octulosonic acid (Kdo) transferase
CPn0155    30.92 ***    169           478           414        hypothetical protein
CPn0156    39.32        112           531 *         544 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0157    38.69        163           402           416        Chlamydia pneumoniae-specific hypothetical protein
CPn0158    37.59        129           306           342        Chlamydia-specific hypothetical protein
CPn0159    40.45        127           573 **        553 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0160    39.69         67           202           264        pyrophosphate-fructose 6-phosphate1-
                                                               phosphotransferase (alpha or beta subunit?)
CPn0161    40.22         83           332           327        conserved hypothetical protein (possible
                                                               a/bhydrolase family protein)
CPn0162    37.03 *       91           266           264        Chlamydia pneumoniae-specific hypothetical protein
CPn0163    42.47        126           377           400        hypothetical protein
CPn0164    34.33 **     146           385           388        Chlamydia pneumoniae-specific hypothetical protein
CPn0165    36.90 *      148           331           369        Chlamydia pneumoniae-specific hypothetical protein
CPn0166    33.33 **     198 *         468           410        Chlamydia pneumoniae-specific hypothetical protein
CPn0167    39.04        100           425           376        hypothetical protein
CPn0168    39.91        215 *         611 **        643 **     Chlamydia pneumoniae-specific hypothetical protein
CPn0169    37.48         56           296           294        Chlamydia pneumoniae-specific hypothetical protein
CPn0170    38.91         67           305           326        hypothetical protein
CPn0171    41.16         65           235           322        GMP Synthase
CPn0172    42.11         90           303           266        inosine 5'-monophosphase dehydrogenase
CPn0173    37.68        190           532 *         586 **     hypothetical protein
CPn0174    40.13        166           339           383        hypothetical protein
CPn0175    39.90        139           437           434        hypothetical protein
CPn0176    37.94        107           296           321        Chlamydia-specific hypothetical protein
CPn0177    40.47         99           251           283        hypothetical protein
CPn0178    40.45        157           476           446        hypothetical protein
CPn0179    38.75        103           503 *         521 *      hypothetical protein
CPn0180    38.56         93           325           360        hypothetical protein
CPn0181    36.32 *      115           443           495        hypothetical protein
CPn0182    39.56         76           176           181        biotin carboxylase
CPn0183    39.09        115           345           316        biotin carrier protein of acetyl-COA carboxylase
                                                               (BCCP)
CPn0184    37.28         66           243           284        elongation factor P
CPn0185    38.41        105           402           371        D-ribulose-phosphate-3 epimerase
CPn0186    40.92        143           336           362        conserved hypothetical protein
CPn0187    39.20        137           254           311        Chlamydia-specific hypothetical protein (basic)
CPn0188    38.05         80           242           319        conserved hypothetical protein
CPn0189    39.87         79           193           290        Chlamydia-specific hypothetical protein
CPn0190    40.32        106           245           292        hypothetical protein
CPn0191    41.70        108           332           322        glutamine ABC transporter, ATP-binding protein
CPn0192    35.47 **     119           352           291        probable amino-acid ABC transporter permease protein
CPn0193    42.34         78           377           363        arginine repressor
CPn0194    41.55        114           302           323        O-sialoglycoprotein endopeptidase (glycoprotease)
CPn0195    40.65        102           314           363        periplasmic oligopeptide-binding protein precursor
                                                               or ABC-type dipeptide transport protein
CPn0196    40.03         89           290           327        periplasmic oligopeptide-binding protein precursor
                                                               or ABC-type dipeptide transport protein
CPn0197    41.44         85           306           366        periplasmic oligopeptide ABC transporter
CPn0198    40.04         76           341           388        oligopeptide binding protein
CPn0199    39.15        113           340           429        oligopeptide ABC transporter (permease)
CPn0200    42.81        121           346           459        dipeptide ABC transporter
CPn0201    40.12         99           396           456        oligopeptide ABC transporter
CPn0202    41.06         98           487           570 *      oligopeptide ABC transporter protein
CPn0203    36.59 *      118           392           452        Chlamydia pneumoniae-specific hypothetical protein
CPn0204    35.98 *      238 **        722 ***       726 ***    hypothetical protein
CPn0205    31.31 ***    278 **        554 **        546 *      hypothetical protein
CPn0206    42.33         88           379           445        Chlamydia-specific hypothetical protein
CPn0207    45.58 *      133           503 *         589 **     oxoglutarate/malate translocator protein
CPn0208    42.04        108           401           427        fructose-6-P phosphotransferase
CPn0209    41.25         99           613 **        629 **     Chlamydia pneumoniae-specific hypothetical protein
CPn0210    38.82        125           338           380        hypothetical protein
CPn0211    37.71        207 *         546 *         521 *      Chlamydia pneumoniae-specific hypothetical protein
CPn0212    39.00         82           257           323        hypothetical protein
CPn0213    35.26 **     292 ***       659 **        678 ***    hypothetical protein
CPn0214    36.05 *       82           270           313        hypothetical protein
CPn0215    39.21        111           262           296        conserved hypothetical protein
CPn0216    38.36        162           421           443        hypothetical protein
CPn0217    37.85         52           261           308        conserved hypothetical protein
CPn0218    38.13        105           355           397        hypothetical protein
CPn0219    44.15         86           329           377        queuine tRNA ribosyl transferase
CPn0220    41.76        112           401           475        Chlamydia pneumoniae-specific hypothetical protein
CPn0221    37.23        180           427           457        Chlamydia pneumoniae-specific hypothetical protein
CPn0222    34.50 **     149           539 *         485        conserved hypothetical protein
CPn0223    37.53        105           438           436        Chlamydia pneumoniae-specific hypothetical protein
CPn0224    38.68        200 *         604 **        610 **     Chlamydia pneumoniae-specific hypothetical protein
CPn0225    41.96        121           333           364        Chlamydia pneumoniae-specific hypothetical protein
CPn0226    40.25        142           444           488        Chlamydia pneumoniae-specific conserved hypothetical
                                                               protein
CPn0227    38.44        143           337           351        conserved hypothetical protein (possible disulfide
                                                               bond formation protein B)(possible disulfide
                                                               oxidoreductase)
CPn0228    39.17         65           334           344        conserved hypothetical protein; potential disulfide
                                                               bond chaperone
CPn0229    41.91         87           283           344        Chlamydia-specific hypothetical protein
CPn0230    39.06        101           247           301        Chlamydia-specific hypothetical protein
CPn0231    40.96        113           333           321        ABC transporter (exact function unknown)
CPn0232    38.48         59           347           318        conserved hypothetical protein (similar to 5'-
                                                               Methylthioadenosine nucleosidase)
CPn0233    35.56 **     208 *         554 **        572 **     hypothetical protein
CPn0234    39.51        149           321           333        Chlamydia-specific hypothetical protein
CPn0235    40.39        103           324           320        CMP-2-keto-3-deoxyoctulosonic acid synthetase
CPn0236    41.64         73           213           227        CTP synthetase (UTP ammonia ligase)
CPn0237    39.69        135           380           456        conserved hypothetical protein (basic)(YqgF family)
CPn0238    39.57        110           240           271        glucose-6-phosphate dehydrogenase
CPn0239    36.68 *       99           293           282        DevB protein (putative oxidoreductase)
CPn0240    43.79         75           231           248        Chlamydia-specific conserved hypothetical protein
CPn0241    41.56        100           243           315        Chlamydia-specific hypothetical protein
CPn0242    38.62        102           387           408        Chlamydia pneumoniae-specific hypothetical protein
CPn0243    38.03        144           390           387        Chlamydia pneumoniae-specific hypothetical protein
CPn0244    40.97         78           312           303        adenylate kinase
CPn0245    40.79        117           260           300        P60-related protein
CPn0246    37.04 *      155           492           382        30S ribosomal protein S9
CPn0247    37.11 *      103           402           368        50S ribosomal protein L13
CPn0248    39.35         92           292           310        ABC transporter ATPase
CPn0249    38.56        104           232           280        conserved hypothetical protein
CPn0250    33.96 **     269 **        651 **        613 **     50S ribosomal protein L33
CPn0251    37.72         56           204           221        conserved hypothetical protein
CPn0254    39.90        149           332           365        Chlamydia-specific conserved hypothetical protein
CPn0255    38.45        121           390           379        Chlamydia-specific hypothetical protein
CPn0256    37.24        126           311           290        Chlamydia-specific hypothetical protein
CPn0257    38.43         76           263           289        Chlamydia-specific conserved hypothetical protein
CPn0260    34.93 **     154           366           319        Chlamydia-specific hypothetical protein (possible
                                                               secA fragment)
CPn0261    41.90        119           372           372        conserved hypothetical protein (probable PPloop
                                                               ATPase member)
CPn0262    40.90         85           277           288        SURE-related acid phosphatase
CPn0263    39.84         84           292           289        conserved hypothetical protein (related to YqfU-
                                                               BACSU)
CPn0264    39.55         93           352           305        phenylacrylic acid decarboxylase (PAD)
CPn0265    34.45 **      64           284           286        benzoate octaphenyltransferase
CPn0266    42.67         86           397           420        Chlamydia pneumoniae-specific hypothetical protein
CPn0267    40.78        110           292           325        Chlamydia pneumoniae-specific hypothetical protein
CPn0268    43.93        200 *         444           508        hypothetical protein
CPn0269    40.18         87           290           354        conserved hypothetical protein (probable
                                                               dipeptidase)
CPn0270    37.51         91           301           286        conserved hypothetical protein (possible SuA5 family
                                                               protein)
CPn0271    40.71        123           293           324        lysophospholipase esterase
CPn0272    38.91        103           318           336        DNA polymerase III subunits gamma and tau
CPn0273    42.83         69           352           332        thymidylate kinase (DTMP)
CPn0274    41.00         62           154           197        DNA gyrase subunit A (topoisomerase)
CPn0275    39.25         50           167           190        DNA gyrase subunit B (topoisomerase)
CPn0276    35.34 **     127           621 **        567 *      Chlamydia-specific hypothetical protein
CPn0277    39.02        170           398           418        hypothetical protein
CPn0278    36.39 *       70           339           302        outer membrane lipoprotein
CPn0279    39.64         99           364           360        ABC transporter permease protein
CPn0280    36.06 *       62           299           265        dipeptide transporter ATPase
CPn0281    40.00         95           304           329        fructose-bisphosphate aldolase class I (FBPaldolase)
CPn0282    39.30        103           234           298        putative amino acid antiporter protein
CPn0283    37.46        116           285           322        hypothetical protein
CPn0284    39.16        124           327           384        hypothetical protein
CPn0285    39.15         90           288           327        hypothetical protein
CPn0286    41.47         82           265           308        Mg++ Transporter (CBS Domain)
CPn0287    38.81         59           220           215        hypothetical protein
CPn0288    41.08        106           264           295        Chlamydia-specific hypothetical protein
CPn0289    38.22        102           276           337        glutamate/aspartate transport carrier permease
CPn0290    40.47        127           226           328        sodium-dependent transporter
CPn0291    41.43        194           461           439        inclusion membrane protein B
CPn0292    44.61        120           299           359        inclusion membrane protein C
CPn0293    38.80         61           264           321        Chlamydia-specific hypothetical protein
CPn0294    34.78 **      86           438           434        cAMP or cGMP-dependent regulatory subunit type II
CPn0295    31.25 ***    241 **        497           394        acyl carrier protein
CPn0296    42.30        131           377           375        3-oxyacyl [acyl-carrier protein] reductase
CPn0297    39.48         96           351           333        malonyl CoA-acyl carrier protein transacetylase
CPn0298    42.16        121           336           329        3-oxyacyl-[acyl-carrier protein] synthase (KAS III
                                                               or FABH)
CPn0299    36.32 *       65           349           300        recombination/repair protein
CPn0300    38.14         85           194           206        probable outer membrane protein (Omp85 analog)
CPn0301    33.91 **     158           328           271        OmpH-like outer membrane protein
CPn0302    40.54        105           270           211        UDP-3-O-(R-3-hydoxymyristoyl)-glucosamine-N-
                                                               acyltransferase
CPn0303    34.58 **      79           246           236        hypothetical protein
CPn0304    42.37         45           249           274        pyruvate dehydrogenase E1 subunit alpha
CPn0305    40.02        106           310           262        pyruvate dehydrogenase E1 subunit beta
CPn0306    42.48         99           195           264        pyruvate dehydrogenase E2 component(dihydrolipoamide
                                                               acetyltransferase)
CPn0307    38.83         70           182           221        alpha glycan phosphorylase
CPn0308    41.80        178           388           405        hypothetical protein
CPn0309    37.31         85           276           250        DnaA replication protein
CPn0310    37.23         50           268           224        60 kDa inner membrane protein
CPn0311    38.29        104           296           303        prolipoprotein diacylglyceryl transferase
CPn0312    37.94        154           403           455        Chlamydia-specific hypothetical protein
CPn0313    42.28        129           504 *         502        holo-[acyl-carrier protein] synthase
CPn0314    41.56         70           321           315        NADPH thioredoxin reductase
CPn0315    36.95 *       90           329           224        30S ribosomal protein S1
CPn0316    37.16         85           343           233        NusA transcription antitermination factor
CPn0317    40.89         89           206           154        translation initiation factor IF-2
CPn0318    34.99 **      82           395           365        ribosome binding factor A
CPn0319    41.24        135           281           298        tRNA pseudouridine 55 synthase
CPn0320    39.16         72           295           309        riboflavin kinase
CPn0321    40.00         79           318           269        conserved GTP-binding protein
CPn0322    37.30         67           229           226        cds1 or FlhB-like flagellar protein; Yop
                                                               translocation protein U
CPn0323    42.80         66           217           277        cds2 membrane component of type III pathway (low
                                                               calcium response proteinD)
CPn0324    43.58        109           281           303        low calcium response E; putative regulatory molecule
                                                               for type III pathway (low calcium response E);
CPn0325    41.44         73           385           479        probable chaperone for type III pathway
CPn0326    40.42         71           200           285        4-alpha-glucanotransferase (amylomaltase)
CPn0327    37.04 *      182           503 *         457        50S ribosomal protein L28
CPn0328    44.05         96           254           346        conserved hypothetical protein (with ACR)
CPn0329    35.50 **      99           258           269        conserved hypothetical protein (possible
                                                               phospholipase D HKD-related)
CPn0330    39.83        226 **        333           360        Chlamydia-specific hypothetical protein
CPn0331    45.80 *      119           276           311        Chlamydia-specific hypothetical protein
CPn0332    39.84        278 **        834 ****      813 ****   hypothetical protein
CPn0333    39.12        151           564 **        582 **     late transcription unit B
CPn0334    39.34        101           359           442        Chlamydia-specific hypothetical protein
CPn0335    46.57 *       84           362           459        methylenetetrahydrofolate dehydrogenase
CPn0336    40.63         76           287           357        conserved hypothetical protein (inner membrane
                                                               lipoprotein)
CPn0337    42.98        148           499 *         540 *      small protein B (SMPB)
CPn0338    40.42         60           244           291        DNA polymerase III beta chain
CPn0339    41.53        104           293           355        RecF protein (ABC superfamily ATPase)
CPn0340    40.08        108           302           342        Chlamydia-specific hypothetical protein (a predicted
                                                               OMP)
CPn0344    40.19         64           259           264        metalloprotease
CPn0345    40.35         62           226           267        conserved hypothetical protein
CPn0346    36.41 *       72           346           317        membrane protein (ABC transport system component?)
CPn0347    39.12         71           322           298        membrane protein with ABC transporter features
CPn0348    40.90         71           300           338        ABC transport system component; ATP-binding protein
CPn0349    40.04         93           298           294        possible adhesin B precursor (possible solute
                                                               binding protein)
CPn0350    39.84        196           413           370        Chlamydia-specific hypothetical protein
CPn0351    40.44        123           265           257        ATP/ADP translocase (Npt1)
CPn0352    37.62         53           240           269        Chlamydia pneumoniae-specific hypothetical protein
CPn0353    23.17 ****** 356 ****      555 **        545 *      hypothetical protein
CPn0354    37.80         59           185           233        Chlamydia pneumoniae-specific hypothetical protein
CPn0355    38.94        123           272           321        Chlamydia pneumoniae-specific conserved hypothetical
                                                               protein
CPn0356    37.85        128           477           497        hypothetical protein
CPn0357    38.26         94           350           398        Chlamydia pneumoniae-specific hypothetical protein
CPn0358    33.90 **     176           598 **        594 **     hypothetical protein
CPn0359    40.85         38           190           269        GTP-binding protein (possible membrane protein)
CPn0360    44.03         76           211           287        6-phosphogluconate dehydrogenase
CPn0361    41.53         93           316           344        tyrosyl-tRNA synthetase
CPn0362    44.19        101           314           367        RNA polymerase alternative sigma factor, rpsD, sigma
                                                               28/WhiG family
CPn0363    41.05         89           245           299        flagellar biosynthesis and secretion protein
CPn0364    44.20        175           377           461        ferredoxin IV
CPn0365    41.47         80           303           366        hypothetical protein
CPn0366    44.23        153           434           459        hypothetical protein
CPn0367    45.12        127           370           448        Chlamydia-specific conserved hypothetical protein
CPn0368    42.06        149           475           492        Chlamydia-specific conserved hypothetical protein
CPn0369    46.17 *       55           287           405        Chlamydia-specific conserved hypothetical protein
CPn0370    44.80         78           281           358        Chlamydia pneumoniae-specific hypothetical protein
CPn0371    41.11        165           442           502        hypothetical protein
CPn0372    41.19        119           524 *         602 **     hypothetical protein
CPn0373    43.59         76           284           342        conserved hypothetical protein (GcpE family protein)
CPn0374    46.59 *      109           396           462        conserved hypothetical protein
CPn0375    42.37        140           371           442        hypothetical protein
CPn0376    38.51        108           424           374        hypothetical protein
CPn0377    44.47         79           301           378        dihydrolipoamide succinyltransferase (pyruvate
                                                               dehydrogenase component E2)
CPn0378    42.17         53           249           299        alpha-ketoglutarate dehydrogenase (oxoglutarate
                                                               dehydrogenase)(pyruvate dehydrogenase component E1)
CPn0379    43.62        203 *         448           435        Chlamydia-specific hypothetical protein
CPn0380    44.56         77           356           468        oxygen-independent coproporphyrinogen III oxidase
CPn0381    44.48         87           203           266        Chlamydia-specific conserved hypothetical protein
CPn0382    45.05         95           355           440        conserved hypothetical protein (possible
                                                               methyltransferase); SAM-Dependent Methytransferase
CPn0383    42.41         73           283           361        Chlamydia-specific hypothetical protein
CPn0384    42.97        377 ****      453           413        histone-like protein 2
CPn0385    41.93         56           184           260        leucyl aminopeptidase, PepA
CPn0386    41.61        147           333           263        single strand DNA-binding protein (SSB)
CPn0387    40.12        165           433           353        Chlamydia-specific hypothetical protein
CPn0388    43.21         91           174           273        glycogen debranching protein
CPn0389    40.66         83           308           332        Chlamydia-specific hypothetical protein
CPn0390    42.70         88           382           390        Holliday Junction DNA helicase (RUVB)
CPn0391    37.10 *      180           542 *         504        hypothetical protein
CPn0392    40.66        128           300           389        deoxycytidine triphosphate deaminase
CPn0393    41.09        181           502 *         508        Chlamydia-specific hypothetical protein
CPn0394    39.81         80           230           306        CBS Domain protein (Hemolysin Homolog)
CPn0395    37.20         45           224           254        conserved hypothetical protein (CBS domain)
CPn0396    44.62         69           270           334        NifS-like aminotransferase
CPn0397    44.04        103           269           329        probable protein phosphatase
CPn0398    38.01        298 ***       483           457        hypothetical protein
CPn0399    42.59         74           271           300        Chlamydia-specific hypothetical protein (basic)
CPn0400    41.21        119           278           345        conserved hypothetical protein
CPn0401    46.06 *       99           450           485        conserved hypothetical protein
CPn0402    40.81         68           320           335        A/G-specific adenine glycosylase
CPn0403    43.63        113           348           413        yceC, predicted pseudouridine synthetase family
CPn0404    45.39         75           249           316        Chlamydia-specific hypothetical protein
CPn0405    47.88 **     162           387           422        Chlamydia-specific hypothetical protein
CPn0406    43.78         75           306           295        enoyl-acp reductase
CPn0407    41.55         94           317           352        conserved hypothetical protein (possible HAD
                                                               superfamily hydrolase/phosphates
CPn0408    35.83 *      115           399           427        Chlamydia-specific hypothetical protein
CPn0409    37.45        102           345           356        Chlamydia-specific hypothetical protein
CPn0410    41.60         74           288           338        DNA polymerase III alpha/epsilon chain
CPn0411    42.44        122           313           369        conserved hypothetical protein
CPn0412    41.36        132           306           375        Chlamydia-specific hypothetical protein
CPn0413    40.10         29           211           302        ABC transporter protein
CPn0414    42.46         88           261           313        acetyl-CoA carboxylase transferase subunit alpha
CPn0415    41.92         46           180           270        Chlamydia-specific hypothetical protein
CPn0416    40.26        100           448           487        histone-like DNA binding protein, IHFA, IHFB, or DBH
CPn0417    42.89        115           295           352        probable N-acetylmuramoyl-l-alanine amidase
CPn0418    42.63         84           201           267        N-acetylymuramoylalanyl-D-glutamate-2,6-
                                                               diaminopimelate ligase
CPn0419    44.24         77           213           318        penicillin binding protein 2
CPn0420    35.07 **     171           437           386        Chlamydia-specific hypothetical protein
CPn0421    42.73         87           332           369        conserved hypothetical protein
CPn0422    39.19         97           327           370        Chlamydia-specific hypothetical protein
CPn0423    39.16        139           365           383        Chlamydia-specific hypothetical protein
CPn0424    37.77         82           213           204        DnaA replication protein
CPn0425    42.52        121           405           367        conserved hypothetical protein
CPn0426    42.31        124           371           416        Chlamydia-specific hypothetical protein
CPn0427    44.18         82           209           320        NADH dehydrogenase (ubiquinone)
CPn0428    41.74         92           263           328        Na+-translocating NADH-quinone reductase, chaingamma
                                                               (possible nqr3)
CPn0429    40.03        111           310           345        Na+-translocating NADH-quinone reductase
CPn0430    43.71        101           300           395        Na+-translocating NADH-quinone reductase
CPn0431    41.07        179           443           489        hypothetical protein
CPn0432    44.44        146           488           528 *      hypothetical protein
CPn0433    41.95        194           380           398        glycine cleavage system H protein
CPn0434    42.10         86           185           286        Chlamydia-specific hypothetical protein
CPn0435    41.51         85           231           299        conserved hypothetical protein (possible
                                                               phospholipase D HKD-related protein)
CPn0436    42.92        106           361           413        lipoate-protein ligase
CPn0437    43.74         61           195           262        CLP protease ATP-binding subunit (CLPA/CLPB/CLPC)
CPn0438    43.65         69           243           320        probable tRNA-(5-methylaminomethyl-2-thiouridylate)
                                                               methyltransferase, TrmU or PP-loop superfamily
                                                               ATPase
CPn0439    41.29         51           353           423        hypothetical protein
CPn0440    41.94         67           320           423        hypothetical protein
CPn0441    41.11        127           280           310        Chlamydia-specific hypothetical protein
CPn0442    45.66 *      148           435           555 *      Chlamydia-specific hypothetical protein
CPn0443    46.81 *       84           234           345        Chlamydia-specific hypothetical protein
CPn0444    44.70        113           177           265        outer membrane protein G
CPn0445    44.61        102           207           336        outer membrane protein G
CPn0446    44.72        118           238           306        outer membrane protein G
CPn0447    43.92        106           196           303        outer membrane protein G
CPn0448    40.77         95           258           298        conserved hypothetical protein
CPn0451    43.70         80           214           313        outer membrane protein G
CPn0452    43.88         88           242           330        outer membrane protein A/I
CPn0453    44.35        101           179           288        outer membrane protein
CPn0454    45.05         77           200           320        outer membrane protein H
CPn0455    44.52        118           279           371        Chlamydia pneumoniae-specific hypothetical protein
CPn0456    43.09         95           278           350        Chlamydia pneumoniae-specific conserved hypothetical
                                                               protein
CPn0457    42.77         57           240           306        Chlamydia pneumoniae-specific hypothetical protein
CPn0458    43.68         89           208           285        Chlamydia pneumoniae-specific hypothetical protein
CPn0459    40.26        168           449           457        Chlamydia pneumoniae-specific hypothetical protein
CPn0460    43.08        138           298           385        Chlamydia pneumoniae-specific hypothetical protein
CPn0461    44.24        107           292           331        Chlamydia pneumoniae-specific hypothetical protein
CPn0462    43.44         65           214           311        Chlamydia pneumoniae-specific hypothetical protein
CPn0463    42.56        115           293           373        Chlamydia pneumoniae-specific hypothetical protein
CPn0464    43.13        130           442           535 *      hypothetical protein
CPn0465    43.77        115           576 **        600 **     Chlamydia pneumoniae-specific hypothetical protein
CPn0466    44.02        126           213           341        outer membrane protein E
CPn0467    43.60        117           224           339        outer membrane protein E
CPn0470    44.87        106           423           488        outer membrane protein E
CPn0471    41.39        102           203           271        outer membrane protein E/F
CPn0472    46.56 *       99           194           244        hypothetical protein
CPn0473    46.37 *      113           290           312        hypothetical protein
CPn0474    45.08         44           227           332        Chlamydia-specific hypothetical protein
CPn0475    45.77 *       85           250           349        1,4-alpha-glucan branching enzyme
CPn0476    45.76 *       84           306           405        Chlamydia-specific hypothetical protein
CPn0477    43.05         93           316           336        conserved hypothetical protein
CPn0478    43.90         72           290           372        HFLX-related GTP-binding protein
CPn0479    42.19        117           323           367        probable PhnP-like protein
CPn0480    44.44        166           330           370        Chlamydia-specific hypothetical protein
CPn0481    42.02         75           230           261        hypothetical protein
CPn0482    41.03         90           308           347        possible arginine-binding periplasmic protein
CPn0483    43.04         68           188           288        conserved hypothetical protein
CPn0484    48.83 **      72           320           451        phospho-2-dehydro-3-deoxyheptonate aldolase
CPn0485    41.03        196           573 **        678 ***    Chlamydia-specific hypothetical protein
CPn0486    44.54         97           261           314        sodium:solute symporter family
CPn0487    44.73        142           277           303        Chlamydia-specific hypothetical protein
CPn0488    39.64        107           383           407        protein kinase C inhibitor (HIT family protein)
CPn0489    39.75        126           304           320        conserved hypothetical protein
CPn0490    43.88         56           208           320        Chlamydia-specific hypothetical protein
CPn0491    42.45        121           300           311        Chlamydia-specific hypothetical protein
CPn0492    42.95        261 **        790 ****      821 ****   hypothetical protein
CPn0493    44.44        251 **        697 ***       721 ***    hypothetical protein
CPn0494    45.50        219 *         564 **        595 **     hypothetical protein
CPn0495    43.13         44           288           343        aspartate aminotransferase
CPn0496    40.76         74           362           422        Chlamydia-specific hypothetical protein
CPn0497    37.73        136           480           469        conserved hypothetical protein
CPn0498    43.29         70           268           317        hypothetical protein
CPn0499    46.29 *      121           326           381        Chlamydia-specific hypothetical protein
CPn0500    45.40         79           292           385        prolyl-tRNA synthetase
CPn0501    40.02         91           285           387        HTH transcriptional repressor; negative regulator of
                                                               class I heat shock genes
CPn0502    38.20         97           349           336        HSP-70 cofactor
CPn0503    42.21        107           358           358        heat shock protein-70
CPn0504    42.98         83           381           431        ribonuclease II (VACB-related)
CPn0505    46.02 *       95           443           496        3-methyladenine DNA glycosylase
CPn0506    41.52         68           486           546 *      conserved hypothetical protein
CPn0507    40.61        346 ****      676 ***       676 ***    Chlamydia-specific hypothetical protein
CPn0508    38.89        267 **        671 ***       625 **     Chlamydia-specific hypothetical protein
CPn0509    38.78         97           341           410        conserved hypothetical protein (acidic)(possible
                                                               metalloenzyme)
CPn0510    43.99        101           541 *         595 **     CBS Domains (Hemolysin homolog)
CPn0511    39.60        164           516 *         559 *      anti-sigma factor
CPn0512    44.71        104           354           417        Chlamydia-specific hypothetical protein
CPn0513    43.06        113           392           451        probable biotin synthetase/lipoic acid synthetase
CPn0514    45.41        110           384           470        conserved hypothetical protein
CPn0515    45.17         89           387           486        probable ubiquinone/menaquinone methyltransferase
CPn0516    45.23         73           294           351        hypothetical protein
CPn0517    45.12        102           399           441        hypothetical protein
CPn0518    38.36        138           276           319        Chlamydia-specific hypothetical protein
CPn0519    43.67        126           346           371        diaminopimelate epimerase
CPn0520    40.45         69           340           348        Clp protease
CPn0521    41.67         57           270           275        serine hydroxymethyltransferase
CPn0522    42.26         97           436           491        Chlamydia-specific hypothetical protein
CPn0523    45.65 *      202 *         537 *         558 *      hypothetical protein
CPn0524    41.85         98           286           361        Chlamydia-specific hypothetical protein
CPn0525    37.91        205 *         338           292        conserved hypothetical protein
CPn0526    41.11         64           325           304        conserved hypothetical protein (possible sugar
                                                               phosphate isomerase)
CPn0527    43.99         83           282           307        dihydrolipoamide 5-succinyltransferas
CPn0528    42.25        105           238           203        proton/sodium:glutamate symporter protein
CPn0529    43.81         70           287           314        probable tetraacyldisaccharide 4'kinase
CPn0530    38.60         84           359           320        23S rRNA methyltransferase
CPn0531    43.24        102           336           361        conserved hypothetical protein (probable methylase)
CPn0532    38.31        120           331           329        riboflavin synthase subunit alpha
CPn0533    38.13        137           435           366        conserved hypothetical protein
CPn0534    39.73         99           411           455        DnaK suppressor
CPn0535    36.69 *      187           320           356        prolipoprotein signal peptidase (LSPA-related)
CPn0536    42.81        111           266           382        alanine glycine carrier permease/ sodium-dependent
CPn0537    38.61        178           368           433        Chlamydia-specific hypothetical protein
CPn0538    38.28        206 *         410           478        Chlamydia-specific hypothetical protein
CPn0539    42.41         77           199           290        outer membrane protein A (approx. 98 kDa)
CPn0540    43.14        113           155           233        predicted outer membrane protein (Chlamydia-
                                                               specific)
CPn0541    39.67        119           323           394        probable adhesin B precursor protein
CPn0542    41.33        140           284           325        ABC transporter protein
CPn0543    41.84        103           265           362        chelated metal transport system membrane protein
CPn0544    45.24         56           342           401        GTP-binding protein (OBG related)
CPn0545    45.10        148           457           440        50S ribosomal protein L27
CPn0546    40.50        184           354           425        50S ribosomal protein L21
CPn0547    41.81        110           419           418        conserved hypothetical protein (YgbB family)
CPn0548    40.13        116           330           394        probable sulfite reductase
CPn0549    39.31        150           526 *         458        30S ribosomal protein S10
CPn0550    41.77         71           188           177        elongation factor G protein
CPn0551    42.19        154           421           404        30S ribosomal protein S7
CPn0552    44.35        192           416           398        30S ribosomal protein S12
CPn0553    40.36         93           308           362        hypothetical protein
CPn0554    40.89        155           522 *         528 *      hypothetical protein
CPn0555    40.63         83           269           302        probable tail-specific protease
CPn0556    41.12        119           344           363        Chlamydia-specific hypothetical cysteine-rich 15 kD
                                                               outer membrane protein
CPn0557    42.61        157           312           269        Chlamydia-specific cysteine-rich hypothetical outer
                                                               membrane protein 60 kDa
CPn0558    41.39        257 **        475           398        Chlamydia-specific hypothetical cysteine-rich outer
                                                               membrane protein 9 kDa (small Crp)
CPn0559    36.51 *      230 **        578 **        582 **     Chlamydia-specific hypothetical protein
CPn0560    45.45         63           265           383        glutamyl-tRNA synthetase
CPn0561    39.29        136           313           323        Chlamydia-specific hypothetical protein (Ygt2-
                                                               related)
CPn0562    42.96         84           234           319        CHLPS 43 kDa protein homolog_1
CPn0563    43.35         58           271           356        single-strand DNA-specific exonuclease
CPn0564    40.65         60           141           208        protein translocation membrane protein SECF
CPn0565    43.42         40           264           342        hypothetical protein
CPn0566    39.71        118           275           322        conserved hypothetical protein (YAES-related)
CPn0567    40.02        105           260           289        phosphatidate cytidylytransferase (CDP diglyceride
                                                               synthetase)
CPn0568    42.09        128           329           326        cytidylate kinase
CPn0569    40.06        153           346           388        1-acyl-sn-glycerol-3-phosphate acyltransferase
CPn0570    41.22         58           201           288        arginyl-tRNA transferase
CPn0571    45.10         58           223           324        UDP-N-acetylglucosamine-1-carboxyvinyltransferase
CPn0572    46.52 *      123           206           272        Chlamydia-specific hypothetical protein
CPn0573    41.14        100           243           333        conserved hypothetical protein (YEBC-related)
CPn0574    40.54        134           349           332        hypothetical protein
CPn0575    39.73         99           351           383        conserved hypothetical protein(YhhY related
                                                               acetyltransferase?)
CPn0577    35.98 *      184           429           399        SwiB (YM74) complex protein
CPn0578    42.68         92           284           332        conserved hypothetical protein (possible
                                                               phosphohydrolase yaeI)
CPn0579    43.24         56           320           408        probable sugar phosphorylase (YgbP-like, YacM-like)
CPn0580    44.28         98           320           374        truA, pseudouridylate synthase I
CPn0581    39.39        122           245           256        conserved hypothetical protein (possible
                                                               phosphoglycolate phosphatase)
CPn0582    42.92        123           352           436        Chlamydia-specific hypothetical protein
CPn0583    36.76 *      199 *         443           484        Chlamydia-specific hypothetical protein
CPn0584    42.37        151           381           463        two-component sensor histidine kinase (ATOS-related)
CPn0585    44.27        134           260           336        conserved hypothetical protein
CPn0586    44.62        108           393           488        two-component sensor system regulatory subunit
                                                               (ATOC-like, NTRC-like)
CPn0587    43.38        138           388           486        conserved hypothetical protein
CPn0588    43.59        105           455           536 *      Chlamydia-specific hypothetical protein
CPn0589    41.37         77           345           402        Chlamydia-specific hypothetical protein
CPn0590    37.50        131           393           375        Chlamydia-specific hypothetical protein
CPn0591    42.70         73           393           454        conserved hypothetical protein
CPn0592    44.23        100           450           480        conserved hypothetical protein (basic)
CPn0593    42.06         79           347           393        Chlamydia-specific hypothetical protein
CPn0594    43.88         55           254           325        phenylalanyl-tRNA synthetase beta subunit
CPn0595    42.70        120           310           356        Chlamydia-specific hypothetical protein
CPn0596    43.87         73           336           418        methylated DNA-protein-cysteine S-methyltransferase
CPn0597    43.51         58           323           372        oligopeptide transport system permease
CPn0598    40.82         60           234           268        oligopeptide transport system permease (dipeptide
                                                               permease?)
CPn0599    41.67         56           188           225        oligopeptide transport system permease
CPn0600    37.65        145           470           515        hypothetical protein
CPn0601    38.94        193           502 *         427        Chlamydia-specific hypothetical protein
CPn0602    35.82 *      112           285           336        Chlamydia-specific hypothetical protein
CPn0603    41.46         51           245           335        ferrochelatase
CPn0604    38.91         75           299           351        probable periplasmic glutamine transport protein
CPn0605    39.04         89           401           403        probable YhhF-related methylase
CPn0606    42.91        130           294           348        Chlamydia-specific hypothetical protein
CPn0607    38.01        111           267           320        ADP-glucose pyrophosphorylase
CPn0608    41.55        100           364           406        uridine 5'-monophosphate synthase
CPn0609    36.49 *      126           509 *         575 **     Chlamydia-specific hypothetical protein
CPn0610    42.15         84           271           291        transcription termination factor rho
CPn0611    37.77        113           452           423        conserved hypothetical protein (ATPase or kinase)
CPn0612    38.08         64           211           220        DNA polymerase I
CPn0613    41.62         55           273           249        protein protease IV/endopeptidase IV
CPn0614    42.45         73           242           273        ribonucleoside triphosphate translocase (NPT2)
CPn0615    40.63        135           379           417        phosphatidylglycerophosphate synthase
CPn0616    39.63        101           249           236        replicative DNA helicase
CPn0617    42.81         64           225           228        glucose inhibited division protein A
                                                               (oxidoreductase)
CPn0618    39.97        116           339           327        lipoate protein ligase
CPn0619    40.69         90           371           338        nucleoside diphosphate kinase
CPn0620    41.35         68           271           291        Holliday junction DNA helicase RUVA
CPn0621    42.41        207 *         387           404        Holliday junction endonuclease
CPn0622    38.32        104           232           247        conserved hypothetical protein
CPn0623    40.89        165           285           335        Chlamydia-specific hypothetical protein
CPn0624    38.69         97           297           273        glyceraldehyde 3-phosphate dehydrogenase
CPn0625    35.90 *      240 **        432           368        50S ribosomal protein L17
CPn0626    36.62 *       72           274           219        RNA polymerase alpha subunit
CPn0627    41.54        221 *         483           411        30S ribosomal protein S11
CPn0628    37.40        152           461           418        30S ribosomal protein S13
CPn0629    39.74         57           240           229        protein translocase SecY subunit
CPn0630    39.08        115           462           361        50S ribosomal protein L15
CPn0631    39.16        111           347           277        30S ribosomal protein S5
CPn0632    37.10 *      175           459           367        50S ribosomal protein L18
CPn0633    39.67        150           385           326        50S ribosomal protein L6
CPn0634    41.54        124           300           340        30S ribosomal protein S8
CPn0635    37.75        125           407           348        50S ribosomal protein L5
CPn0636    39.58        213 *         375           359        50S ribosomal protein L24
CPn0637    36.86 *      149           408           336        50S ribosomal protein L14
CPn0638    37.16        200 *         512 *         434        30S ribosomal protein S17
CPn0639    35.62 **     241 **        550 *         483        50S ribosomal protein L29
CPn0640    41.49        159           454           409        50S ribosomal protein L16
CPn0641    41.96        137           332           254        30S ribosomal protein S3
CPn0642    41.37        204 *         474           438        50S ribosomal protein L22
CPn0643    38.58        223 *         515 *         521 *      30S ribosomal protein S19
CPn0644    42.34        133           307           266        50S ribosomal protein L2
CPn0645    38.39        173           427           452        50S ribosomal protein L23
CPn0646    36.89 *      159           369           315        50S ribosomal protein L4
CPn0647    40.86        154           343           268        50S ribosomal protein L3
CPn0648    44.31        152           308           352        Chlamydia-specific hypothetical protein
CPn0649    44.72         78           256           295        methionyl tRNA formyltransferase
CPn0650    42.14        123           288           310        UDP-N-acetylglucosamine acyltransferase
CPn0651    40.26        159           382           401        (3R)-hydroxymyristoyl-acp-dehydratase
CPn0652    39.46        998 *******   333           324        UDP-3-O-acyl-GlcNAc deacetylase
CPn0653    42.44         65           209           284        apolipoprotein N-acyltransferase
CPn0654    41.45        126           447           443        acyl CoA thioester hydrolase
CPn0655    37.20        147           295           306        DNA polymerase III alpha chain
CPn0656    38.33        160           631 **        641 **     hypothetical protein
CPn0657    39.91         89           363           348        conserved hypothetical protein (acidic) (possible
                                                               ATPase or kinase)
CPn0658    39.75         87           353           371        Chlamydia-specific hypothetical protein
CPn0659    41.42        144           448           491        thioredoxin
CPn0660    40.13         74           389           409        ribosomal RNA methylase
CPn0661    38.74        127           379           300        FKBP-type peptidyl-prolylcis-trans isomerase (MIP-
                                                               like protein)
CPn0662    40.85         70           243           250        aspartyl-tRNA synthetase
CPn0663    41.07         95           247           215        histidyl-tRNA synthetase
CPn0664    39.22        166           590 **        605 **     hypothetical protein
CPn0665    42.18        124           224           252        hexose phosphate transport system regulatory protein
                                                               (UHPC-related)
CPn0666    40.26         66           164           195        DNA polymerase III alpha chain
CPn0667    43.39         85           301           362        Chlamydia-specific hypothetical protein
CPn0668    40.02         97           245           270        Chlamydia-specific hypothetical protein
CPn0669    38.83        151           430           444        Chlamydia-specific hypothetical protein
CPn0670    40.69         92           403           452        conserved hypothetical protein (possible sigma
                                                               regulatory factor - histidine kinase)
CPn0671    40.09         99           384           416        Chlamydia-specific hypothetical protein
CPn0672    44.09         98           261           367        D-alanyl-D-alanine carboxypeptidase (penicillin
                                                               binding protein 6)
CPn0673    37.78        206 *         692 ***       672 **     hypothetical protein
CPn0674    41.10        119           255           270        FMU/SUN-related methyltransferase
CPn0675    40.87         68           238           297        Chlamydia-specific hypothetical protein
CPn0676    43.25         89           294           335        Chlamydia-specific hypothetical protein
CPn0677    45.69 *      124           286           314        Chlamydia pneumoniae-specific hypothetical protein
CPn0678    52.65 ****   109           341           411        Chlamydia pneumoniae-specific hypothetical protein
CPn0679    44.33         54           217           254        phosphoglycerate kinase
CPn0680    42.86        121           230           263        phosphate permease/transporter
CPn0681    36.89 *      120           368           359        conserved hypothetical protein (acidic)
CPn0682    43.90         65           309           373        dipeptide transport ATP-binding protein
CPn0683    41.23         83           293           336        oligopeptide transport ATP-binding protein
CPn0684    43.09        123           396           452        stage 0 sporulation protein J (spoOJ)
CPn0685    34.64 **     223 *         624 **        638 **     hypothetical protein
CPn0686    40.74        190           618 **        668 **     hypothetical protein
CPn0687    40.37         91           372           399        Chlamydia-specific hypothetical protein
CPn0688    40.58         63           345           419        Chlamydia-specific hypothetical protein
CPn0689    42.51         71           255           261        NifS-related protein (aminotransferase)
CPn0690    41.27         99           286           303        conserved hypothetical protein (possible ABC
                                                               transporter related membrane protein)
CPn0691    40.86        129           368           350        ABC transporter ATPAse
CPn0692    41.92         95           320           353        conserved hypothetical protein (possible ABC
                                                               transporter associated protein)
CPn0693    40.59        110           318           318        O-linked GlcNAc transferase
CPn0694    40.64         53           280           282        probable penicillin binding protein 2
                                                               (transglycosylase/transpeptidase)
CPn0695    42.74        148           369           335        major outer membrane protein (MOMP)
CPn0696    38.13        125           324           298        30S ribosomal protein S2
CPn0697    39.81        143           335           288        elongation factor TS (EF-TS)
CPn0698    39.89         95           291           300        uridylate kinase
CPn0699    38.86        146           352           343        ribosome recycling factor
CPn0700    40.50        123           445           436        Chlamydia-specific hypothetical protein
CPn0701    37.79        110           299           313        arginine kinase
CPn0702    41.41         74           209           230        General secretion pathway precursor D protein (YopC
                                                               translocation protein)
CPn0703    40.23         68           271           307        possible serine/threonine kinase
CPn0704    42.11         99           227           282        conserved hypothetical protein (acidic)(possible
                                                               FLIN flagellar motor switch domain)
CPn0705    37.60        144           363           324        Chlamydia-specific hypothetical protein
CPn0706    39.25        238 **        378           353        Chlamydia-specific hypothetical protein
CPn0707    45.82 *      106           247           296        flagellar-type ATPase (probable beta subunit)
CPn0708    42.22         69           281           348        Chlamydia-specific hypothetical protein
CPn0709    38.89        189           478           465        Chlamydia-specific hypothetical protein
CPn0710    39.61        246 **        493           508        Chlamydia-specific hypothetical protein
CPn0711    38.15        186           507 *         439        Chlamydia-specific hypothetical protein
CPn0712    39.99         53           148           196        conserved hypothetical protein (acidic, homology to
                                                               adenylate cyclase)
CPn0713    39.69        140           495           452        Chlamydia-specific hypothetical protein
CPn0714    39.41        101           326           351        glutamyl-tRNA reductase
CPn0715    38.09         76           220           276        DNA gyrase subunit B (topoisomerase)
CPn0716    40.99        108           274           341        DNA gyrase subunit A (topoisomerase)
CPn0717    41.67         83           467           472        Chlamydia-specific hypothetical protein
CPn0718    41.12        135           437           468        hypothetical protein
CPn0719    41.41        102           340           387        pseudouridine synthase
CPn0720    39.24        124           597 **        580 **     conserved hypothetical protein
CPn0721    44.69         66           271           321        2-dehydro-3-deoxyphosphooctonate aldolase
CPn0722    38.45        147           352           359        Chlamydia-specific hypothetical protein
CPn0723    40.94         80           328           396        Probable ABC transporter ATP-binding protein (basic)
CPn0724    41.58        113           324           323        hypothetical protein
CPn0725    42.11        144           540 *         564 *      Chlamydia-specific hypothetical protein
CPn0726    40.99         97           198           240        Chlamydia-specific conserved hypothetical protein
CPn0727    39.48         81           173           205        Chlamydia-specific conserved hypothetical protein
CPn0728    44.84        147           205           272        Chlamydia-specific hypothetical protein
CPn0729    39.24         77           224           232        Chlamydia-specific hypothetical protein
CPn0730    41.00         77           221           219        MVIN virulence factor
CPn0731    36.16 *      167           515 *         535 *      hypothetical protein
CPn0732    40.59        113           331           310        endonuclease IV
CPn0733    40.63        127           377           404        30S ribosomal protein S4
CPn0734    39.08         99           264           291        conserved hypothetical protein
CPn0735    35.72 *      164           321           309        uridine kinase
CPn0736    39.87         69           239           309        conserved hypothetical protein (basic)(possible
                                                               integral membrane protein)
CPn0737    38.21        102           220           257        exodeoxyribonuclease V gamma chain
CPn0738    37.77         86           194           270        exodeoxyribonuclease V beta chain
CPn0739    39.74        148           342           411        Chlamydia-specific hypothetical protein
CPn0740    38.22        107           296           302        aromatic amino acid aminotransferase
CPn0741    39.51         71           268           316        transcription elongation factor (GreA)
CPn0742    33.57 **     154           404           455        Chlamydia-specific hypothetical protein
CPn0743    38.96        103           198           253        Na+-translocating NADH-ubiquinone oxidoreductase
                                                               subunit alpha
CPn0744    39.24         70           318           333        porphobilinogen synthase (delta-aminolevulinic acid
                                                               dehydratase)
CPn0745    43.64        201 *         654 **        697 ***    hypothetical protein
CPn0746    40.29         62           256           225        Chlamydia-specific hypothetical protein
CPn0748    40.57        100           342           296        geranylgeranyl pyrophosphate synthase
CPn0749    41.79        147           290           296        UDP-N-acetylglucosamine pyrophosphorylase
CPn0750    38.56        110           274           333        DNA-binding response regulator; possible signal
                                                               transduction regulatory protein
CPn0751    38.36         74           223           284        Chlamhydia-specific hypothetical protein
CPn0752    39.81         85           259           296        exonuclease V alpha subunit protein
CPn0753    42.87        159           358           379        hypothetical protein
CPn0754    36.33 *      245 **        484           483        30S ribosomal protein S20
CPn0755    37.23         88           286           273        Chlamydia-specific hypothetical protein
CPn0756    39.97        100           318           335        RNA polymerase sigma factor RpoD [sigma-66]
CPn0757    38.02        202 *         493           544 *      probable dihydroneopterin aldolase (DHNA)
CPn0758    41.91         59           314           324        dihydropterin pyrophosphokinase/dihydropteroate
                                                               synthase
CPn0759    38.40        121           410           412        dihydrofolate reductase
CPn0760    39.41         99           328           361        conserved hypothetical protein
CPn0761    38.81        168           278           247        Chlamydia-specific hypothetical protein
CPn0762    41.71         91           244           218        RecA protein
CPn0763    45.12        115           487           578 **     predicted formyltetrahydrofolate cycloligase ygfA
CPn0764    41.80        104           234           306        Chlamydia-specific hypothetical protein
CPn0765    38.63        121           295           341        Chlamydia-specific hypothetical protein
CPn0766    42.03         80           235           312        Chlamydia-specific hypothetical protein
CPn0767    36.36 *      202 *         460           427        Chlamydia-specific hypothetical protein
CPn0768    43.45         77           244           299        conserved hypothetical protein (probable NifR3-like
                                                               protein)
CPn0769    40.56         56           190           225        DNA topoisomerase I
CPn0770    42.14        109           285           322        Chlamydia-specific hypothetical protein
CPn0771    41.04         99           250           342        RNA polymerase sigma-54 factor (major sigma factor)
CPn0772    40.26         74           227           264        ATP dependent DNA helicase
CPn0773    41.91        128           346           356        Uracil-DNA N-glycosylase
CPn0774    45.73 *      132           495           532 *      Chlamydia-specific hypothetical protein
CPn0775    41.55         97           310           341        conserved hypothetical protein
CPn0776    42.33         87           239           274        conserved hypothetical protein (YBBC related)
CPn0777    43.01         63           191           274        heat shock protein 60
CPn0778    40.78         89           359           364        thiol specific antioxidant (thioredoxin peroxidase)
CPn0779    35.38 **     151           501 *         448        Chlamydia-specific hypothetical protein
CPn0780    38.67        152           289           282        conserved hypothetical protein (basic) (probable
                                                               invasin repeat phosphatase)
CPn0781    41.45        102           351           397        peptidoglycan-associated lipoprotein
CPn0782    42.13         81           232           314        tolB protein precursor
CPn0783    41.44        144           343           411        Chlamydia-specific hypothetical protein
CPn0784    42.89        127           377           473        probable biopolymer transfer (tolR) protein
CPn0785    40.34        112           353           450        probable biopolymer transport (tolQ) protein
CPn0786    43.99         67           193           246        probable disulfide interchange protein, DsbD-
                                                               related.
CPn0787    43.89        102           288           360        conserved hypothetical protein (acidic) (possible
                                                               PHP hydrolase)
CPn0788    41.83        123           302           345        succinate dehydrogenase cytochrome component
CPn0789    44.23         95           244           290        fumarate reductase / succinate
                                                               dehydrogenaseflavoprotein component
CPn0790    42.99         88           338           374        succinate dehydrogenase iron-sulfur component
CPn0791    42.24         57           232           321        Chlamydia-specific hypothetical protein
CPn0792    40.72         67           195           291        Chlamydia-specific conserved hypothetical protein
CPn0793    40.67         67           248           293        sigma regulatory family protein - PP2C phosphatase
                                                               (RsbW antagonist)
CPn0794    43.88        134           293           376        Chlamydia pneumoniae-specific hypothetical protein
CPn0795    42.48        117           289           365        Chlamydia pneumoniae-specific hypothetical protein
CPn0796    42.88        101           204           222        Chlamydia pneumoniae-specific hypothetical protein
CPn0797    45.72 *      150           262           331        Chlamydia pneumoniae-specific hypothetical protein
CPn0798    42.50         92           345           360        Chlamydia pneumoniae-specific hypothetical protein
CPn0799    42.29        160           318           329        Chlamydia pneumoniae-specific hypothetical protein
CPn0800    42.89         69           226           272        enolase (phosphopyruvate hydratase)(2-
                                                               phosphoglycerate dehydratase)
CPn0801    43.77         79           202           308        excinuclease ABC subunit B
CPn0802    43.00         79           336           435        tryptophanyl t-RNA synthetase
CPn0803    35.86 *      167           368           344        Chlamydia-specific hypothetical protein
CPn0804    40.64        124           311           379        Chlamydia-specific hypothetical protein
CPn0805    42.19        107           281           279        SpoOJ regulator (chromosome partitioning ATPase)
CPn0806    42.09         73           215           225        threonyl-tRNA synthetase
CPn0807    41.56        119           230           311        conserved hypothetical protein
CPn0808    45.47        165           267           254        conserved hypothetical protein
CPn0809    45.88 *      168           237           279        Chlamydia-specific conserved hypothetical protein
CPn0810    40.22        181           425           469        Chlamydia-specific hypothetical protein
CPn0811    40.80        103           323           344        low calcium response locus H protein
CPn0812    42.80         52           194           260        DNA mismatch repair protein
CPn0813    44.19         76           230           297        aminopeptidase P
CPn0814    46.73 *       69           325           421        Chlamydia-specific hypothetical protein
CPn0815    43.97         63           222           273        type II secretion pathway protein (protein D)
CPn0816    45.34         88           232           330        general secretion pathway protein type E-related
                                                               (GSPE)
CPn0817    43.96         72           359           460        type II secretion pathway protein (protein F).
CPn0818    39.25        149           439           460        Chlamydia-specific hypothetical protein
CPn0819    43.18        105           470           468        Chlamydia-specific hypothetical protein
CPn0820    39.59         64           328           313        Chlamydia-specific hypothetical protein
CPn0821    42.19        120           219           281        Chlamydia-specific hypothetical protein
CPn0822    40.04         94           393           414        Chlamydia-specific hypothetical protein
CPn0823    42.76        119           293           394        YopT translocation protein (FliR or YscT-related)
CPn0824    38.54        120           446           494        YopS translocation protein/ FliQ
CPn0825    42.02         95           303           361        YopR translocation protein
CPn0826    38.89        134           258           294        YopL translocation protein
CPn0827    39.57         76           297           302        Chlamydia-specific hypothetical protein
CPn0828    43.06         96           314           337        YopJ translocation protein
CPn0829    37.63        116           316           368        Chlamydia pneumoniae-specific hypothetical protein
CPn0830    35.45 **      97           352           395        Chlamydia pneumoniae-specific hypothetical protein
CPn0831    40.35        157           625 **        648 **     hypothetical protein
CPn0832    45.67 *       71           268           291        lipoic acid synthetase
CPn0833    43.94         82           267           279        pyruvate dehydrogenase E3 component(dihydrolipoamide
                                                               dehydrogenase)
CPn0834    45.16        104           430           406        Chlamydia-specific hypothetical protein
CPn0835    40.84         39           136           255        SNF2 Helicase
CPn0836    40.31         93           229           235        branched-chain amino acid transport protein
CPn0837    42.22        122           331           364        endonuclease III
CPn0838    43.49        109           292           348        thiophene and furan oxidation protein (GTPase)
CPn0839    39.96        103           261           295        phosphatidylserine decarboxylase
CPn0840    42.76        162           260           278        Chlamydia-specific hypothetical protein
CPn0841    41.74        102           185           239        preprotein translocase subunit A protein
CPn0842    41.81        155           703 ***       704 ***    Chlamydia-specific hypothetical protein
CPn0843    38.31        238 **        618 **        593 **     Chlamydia-specific hypothetical protein
CPn0844    39.07         71           222           278        THDF/YPHC-related GTPase
CPn0845    42.01         85           296           358        poly(A) polymerase
CPn0846    40.28         59           269           285        ATP-dependent protease, ClpX
CPn0847    45.10        101           448           494        ATP-dependent ClpP endopeptidase subunit
CPn0848    39.20        137           358           325        trigger factor -- peptidyl prolyl cis-trans
                                                               isomerase
CPn0849    40.62         76           336           344        SNF2 family helicase
CPn0850    43.14         91           447           414        Rod shape determining protein MREB/HSP70 sugar
                                                               kinase
CPn0851    43.76         71           335           303        phosphoenolpyruvate carboxykinase
CPn0852    40.42         75           266           309        Chlamydia-specific conserved hypothetical protein
CPn0853    40.77        111           302           360        Chlamydia-specific conserved hypothetical protein
CPn0854    43.19         79           323           397        major outer membrane protein (MOMP)
CPn0855    45.27         87           345           436        glycerol-3-phosphate dehydrogenase
CPn0856    42.06         61           239           314        UDP-glucose phosphorylase
CPn0857    31.98 ***    157           420           449        Chlamydia-specific hypothetical protein
CPn0858    44.55         85           267           383        probable flagellar-type ATP synthase (beta subunit)
CPn0859    43.39        159           395           459        Chlamydia-specific hypothetical protein
CPn0860    38.79         84           318           358        probable flagellar M-ring protein
CPn0861    42.95         89           293           330        conserved hypothetical nifU-like protein (acidic)
CPn0862    43.98         88           250           346        NifS-related protein (aminotransferase?) G
CPn0863    39.45         86           354           313        phosphoglycerate mutase
CPn0864    42.51        117           357           407        yjbC, predicted pseudouridine synthase
CPn0865    42.42        131           418           495        Chlamydia-specific hypothetical protein
CPn0866    41.62         81           325           413        biotin synthetase (bifunctional synthetase and
                                                               repressor)
CPn0867    41.35        121           257           370        rod-shape determining protein
CPn0868    42.08         56           223           262        cation-transporting ATPase
CPn0869    39.22         81           296           340        Chlamydia-specific hypothetical protein
CPn0870    42.37         41           218           287        seryl-tRNA synthetase
CPn0871    45.62 *       97           262           346        riboflavin-specific deaminase
CPn0872    42.80         60           207           205        GTP cyclohydrolase II /3,4-dihydroxy-2-butanone-4-
                                                               phoshate synthase
CPn0873    41.94         61           373           351        riboflavin synthase subunit beta
CPn0874    42.22         83           269           304        Chlamydia-specific hypothetical protein
CPn0875    42.35        126           355           333        Chlamydia-specific hypothetical protein
CPn0876    43.86        110           294           366        D-alanine/glycine permease
CPn0877    44.59        121           351           365        conserved hypothetical protein, YbcL family (acidic)
CPn0878    41.89        158           415           413        conserved hypothetical protein (basic)
CPn0879    39.47        104           307           330        conserved hypothetical protein (possible metal-
                                                               dependent hydrolase)
CPn0880    39.07         70           260           237        cell division protein (ATPase)
CPn0881    42.67        151           452           477        Chlamydia pneumoniae-specific hypothetical protein
CPn0882    41.93         99           224           291        Chlamydia pneumoniae-specific hypothetical protein
CPn0883    40.35         67           264           286        Na+-translocating NADH-quinone reductase (possible
                                                               phenolhydroxylase component)
CPn0884    38.42        143           395           421        conserved hypothetical protein
CPn0885    40.80         71           268           340        probable RNA methyltransferase
CPn0886    38.17        296 ***       528 *         501        Hc1 histone analog
CPn0887    41.96         80           157           250        Chlamydia-specific hypothetical protein (possible
                                                               phosphoprotein)
CPn0888    43.81         78           205           303        protoporphryninogen oxidase (PPO)
CPn0889    40.38         78           185           255        coproporphryninogen III oxidase
CPn0890    40.30         90           226           285        uroporphyrinogen decarboxylase
CPn0891    41.31         58           152           236        transcription repair coupling factor (TCRF)helicase
CPn0892    42.42         42           169           219        alanyl-tRNA synthetase
CPn0893    42.64         64           191           202        transketolase
CPn0894    41.61         59           249           301        AMP nucleosidase
CPn0895    42.58        111           282           338        elongation factor P (EF-P)
CPn0896    38.53        320 ***       511 *         566 *      Chlamydia-specific hypothetical protein
CPn0897    41.89        100           276           337        predicted Icc-related protein
CPn0898    40.32         57           194           220        heat shock protein-60, GroEL
CPn0899    41.82         86           241           290        N-acetylymuramoylalanyl-D-glutamate-2,6,-
                                                               diaminopimelate-D-alanine-D-alanine ligase
CPn0900    42.48        101           262           319        phospho-N-acetylmuramoyl pentapeptide transferase
CPn0901    41.95         88           239           306        N-acetylymuramoyl-L-alanine-D-glutamate ligase
CPn0902    43.87        155           328           367        conserved hypothetical protein (probable cell wall-
                                                               binding protein) (basic)
CPn0903    43.26         72           264           376        FTSW family protein (sporulation/cell division)
CPn0904    42.74        101           292           357        GLCNAC transferase (UDP-N-acetylglucosamine-N-
                                                               acetylmuramyl-(pentapeptide)-pyrophosphoryl-
                                                               undecaprenol N acetylglucosamine transferase)
CPn0905    40.95         65           152           249        MUR-NAc-L-alanine and D-alanine-D-alanine ligase
                                                               (fusion protein)
CPn0906    37.06 *      162           391           328        conserved hypothetical protein
CPn0907    42.48        135           512 *         586 **     periplasmic divalent cation tolerance protein
CPn0908    37.15         91           274           277        Chlamydia-specific hypothetical protein
CPn0909    37.54        164           436           431        anti-sigma factor/ sporulation-related protein
CPn0910    38.78         69           224           262        miaA, tRNA pyrophosphate transferase
CPn0911    42.00         62           281           322        probable biotin synthesis protein (ThiM-related)
CPn0912    37.92        164           226           205        conserved hypothetical protein
CPn0913    35.98 *      272 **        618 **        600 **     hypothetical protein
CPn0914    39.30        106           409           436        hypothetical protein
CPn0915    35.56 **      98           342           386        conserved hypothetical protein (acidic)(possible
                                                               ybeB protein)
CPn0916    44.36        118           221           229        beta-ketoacyl-ACP synthase
CPn0917    36.87 *      103           371           321        conserved hypothetical protein (acidic)(possible
                                                               Mut-family pyrophosphorylase)
CPn0918    39.20        103           281           278        inorganic pyrophosphatase (PPASE)
CPn0919    42.71         76           220           224        leucine dehydrogenase (glutamate dehydrogenase?)
CPn0920    41.72         57           250           240        3'(2'),5'-bisphosphate nucleotidase
CPn0921    39.90        124           341           326        Chlamydia-specific hypothetical protein (possible
                                                               snGlycerol-3-P Acyltransferase?)
CPn0922    41.25         69           219           276        2-acylglycerophosphoethanolamine acyltransferase
CPn0923    40.79         98           262           295        8-amino-7-oxononanoate synthase
CPn0924    42.89         51           162           295        primosomal protein N'
CPn0925    38.35        139           281           364        Chlamydia-specific hypothetical protein
CPn0926    41.92        211 *         392           373        protein disulfide isomerase
CPn0927    42.17         80           213           300        CHLPS 43 kDa protein homolog_2
CPn0928    41.40         67           227           326        CHLPS 43 kDa protein homolog_3
CPn0929    41.26         63           216           307        CHLPS 43 kDa protein homolog_4
CPn0930    45.07        147           453           543 *      hypothetical protein
CPn0931    41.04        100           269           312        lysyl-tRNA synthetase
CPn0932    42.25         59           265           310        cysteinyl-tRNA synthetase
CPn0933    42.02         96           325           376        conserved hypothetical protein (possible disulfide
                                                               isomerase) (acidic)
CPn0934    44.29        240 **        389           447        ribonuclease P protein component
CPn0935    46.38 *      248 **        666 ***       695 ***    50S ribosomal protein L34
CPn0936    39.86        229 **        534 *         532 *      50S ribosomal protein L36
CPn0937    39.54        200 *         534 *         459        30S ribosomal protein S14
CPn0938    35.85 *      148           358           403        conserved hypothetical protein
CPn0939    38.00        170           297           306        Chlamydia-specific hypothetical protein
CPn0940    41.50         68           243           324        excinuclease ABC subunit C
CPn0941    41.90         62           189           252        DNA mismatch repair protein
CPn0942    40.33         71           202           255        DNA primase
CPn0943    40.15         91           525 *         530 *      Chlamydia-specific hypothetical protein
CPn0944    43.35         91           399           469        hypothetical protein
CPn0945    43.27        170           384           465        Chlamydia-specific hypothetical protein
CPn0946    41.15         40           237           247        glycyl-tRNA synthetase
CPn0947    39.45         88           377           420        phosphatidylglycerophosphate synthase
CPn0948    40.95         90           226           271        glycogen synthase
CPn0949    38.53        143           361           384        general stress protein
CPn0950    41.80        123           317           352        peptidyl-tRNA hydrolase
CPn0951    37.46        153           459           414        30S ribosomal protein S6
CPn0952    36.14 *      246 **        580 **        517        30S ribsomal protein S18
CPn0953    38.82        143           420           317        50S ribosomal protein L9
CPn0956    40.95         91           375           447        Chlamydia-specific hypothetical protein
CPn0957    40.72         50           232           291        insulinase family/protease III
CPn0958    37.75        111           213           253        glycerol-3-phosphate-O-acyltransferase
CPn0959    38.31         94           231           224        probable cytoplasmic axial filament
                                                               protein/ribonuclease E
CPn0960    42.69        111           389           460        Chlamydia-specific hypothetical protein
CPn0961    40.98        222 *         600 **        584 **     50S ribosomal protein L32
CPn0962    42.89         74           292           320        PLSX-related fatty acid/phospholipid biosynthesis
                                                               protein
CPn0963    39.61         54           201           173        outer membrane protein D
CPn0964    40.73         53           186           293        hypothetical protein
CPn0965    41.10         55           194           314        lipid A disaccharide synthase
CPn0966    37.59         63           199           278        poly(A) polymerase
CPn0967    42.41         91           184           189        phosphoglucomutase or phosphomannomutase
CPn0968    41.48         69           266           270        glucosamine-fructose-6-phosphate aminotransferase
CPn0969    40.22        130           203           205        tyrosine/tryptophan-specific transport protein
CPn0969    41.12        153           398           452        Chlamydia-specific conserved hypothetical protein
CPn0970    40.13        128           208           210        tyrosine/tryptophan-specific transport protein
CPn0971    41.14        157           283           304        conserved hypothetical protein (integral membrane
                                                               protein, possible permease)
CPn0972    42.27         99           332           369        cell division protein
CPn0973    43.93         73           228           317        succinyl-CoA synthetase beta subuni
CPn0974    48.41 **     108           375           463        succinyl CoA synthetase alpha chain
CPn0975    42.64         86           349           444        hypothetical protein
CPn0976    40.38         88           231           334        Chlamydia pneumoniae-specific hypothetical protein
CPn0977    39.90         96           334           355        Chlamydia pneumoniae-specific hypothetical protein
CPn0978    39.15        116           302           314        Chlamydia pneumoniae-specific hypothetical protein
CPn0979    42.13         59           209           216        periplasmic serine protease
CPn0980    41.63         98           213           295        conserved hypothetical protein
CPn0981    41.68         55           165           270        zinc metalloprotease (insulinase family)
CPn0982    40.13         87           256           304        conserved hypothetical protein
CPn0983    40.98         73           263           296        CDP-diacylglycerol-serine-O-phosphatidyltransferase
CPn0984    40.89         41           137           211        ribonucleoside diphosphate reductase alpha chain
                                                               (large chain)
CPn0985    37.85         62           305           296        ribonucleoside diphosphate reductase beta subunit
                                                               (small chain)
CPn0986    39.56        135           348           363        rRNA methylase
CPn0987    42.45        122           373           436        ytgB-like rRNA methylase
CPn0988    44.37         93           290           378        UDP-N-acetylenolpyruvoylglucosamine reductase
CPn0989    37.27        107           389           357        Chlamydia-specific conserved hypothetical protein
CPn0990    37.97        162           339           309        translation initiation factor 3 (IF-3)
CPn0991    38.46        188           500 *         501        50S ribosomal protein L35
CPn0992    41.80        191           463           400        50S ribosomal protein L20
CPn0993    39.71         69           240           241        phenylalanyl-tRNA synthetase alpha chain
CPn0994    37.88         98           179           208        Chlamydia-specific hypothetical protein
CPn0995    39.69         95           289           358        Chlamydia-specific hypothetical protein
CPn0996    38.45         80           234           262        conserved hypothetical protein
CPn0997    38.54        123           336           308        conserved hypothetical protein (possible PP-loop
                                                               ATPase)
CPn0998    43.18         60           190           265        FtsH-related ATPase protease
CPn0999    40.48         49           210           174        polyribonucleotide nucleotidyltransferase
CPn1000    35.93 *       82           561 **        560 *      30S ribosomal protein S15
CPn1001    43.16        159           401           427        cytosine deaminase
CPn1002    42.42        127           637 **        641 **     Chlamydia-specific hypothetical protein
CPn1003    41.53        145           461           544 *      Chlamydia-specific hypothetical protein
CPn1004    40.80        143           473           549 *      Chlamydia-specific hypothetical protein
CPn1005    40.04        135           472           497        Chlamydia-specific conserved hypothetical protein
CPn1006    37.04 *      134           469           523 *      Chlamydia-specific conserved hypothetical protein
CPn1007    40.09        173           657 **        649 **     Chlamydia-specific hypothetical protein
CPn1008    40.49        127           351           390        conserved hypothetical protein
CPn1009    43.26        139           406           475        methionine aminopeptidase
CPn1010    40.89        137           385           458        membrane protein (YHGN-related)
CPn1011    43.63        112           544 *         590 **     membrane protein (YHGN-related)
CPn1012    42.34         68           356           418        ABC transporter permease fused to pyrimidine
                                                               biosynthesis enzyme
CPn1013    40.27         85           352           361        fumarate hydratase class II
CPn1014    43.76         69           285           380        sulfate transporter
CPn1015    40.62         89           272           253        hypothetical protein (possible IM protein) (possible
                                                               Na+/H+ antiporter)
CPn1016    41.45         65           219           230        Chlamydia-specific conserved hypothetical protein
CPn1017    41.48         95           319           307        penicillin tolerance (LytB) protein; metalloprotease
CPn1018    39.32         89           348           374        hypothetical protein
CPn1019    43.04        145           257           315        Chlamydia-specific conserved hypothetical protein
CPn1020    39.14        104           218           251        Chlamydia-specific hypothetical protein
CPn1021    36.80 *       66           355           355        low calcium response locus H protein
CPn1022    41.75        162           292           313        Chlamydia-specific conserved hypothetical protein
CPn1023    39.33        144           432           481        hypothetical protein
CPn1024    46.14 *       90           334           436        integrase/recombinase (XerD-related)
CPn1025    44.21        125           271           354        glucose-6-phosphate isomerase
CPn1026    45.83 *      286 ***       706 ***       685 ***    Chlamydia-specific hypothetical protein
CPn1027    43.50        101           182           294        Chlamydia pneumoniae-specific hypothetical protein
CPn1028    46.00 *      134           329           354        malate dehydrogenase
CPn1029    38.21        106           264           277        hypothetical protein
CPn1030    45.37        111           337           426        conserved hypothetical; probable D-amino acid
                                                               dehydrogenase
CPn1031    43.42        129           322           435        arginine/ornithine antiporter
CPn1032    42.01        170           458           454        Chlamydia-specific hypothetical protein
CPn1033    42.75         68           247           330        Chlamydia-specific hypothetical protein
CPn1034    42.46        109           405           460        Chlamydia-specific conserved hypothetical protein
CPn1035    43.58         82           351           451        shikimate-5-dehydrogenase
CPn1036    40.09        125           304           384        3-dehydroquinate synthase
CPn1037    46.39 *       74           319           433        chorismate synthase
CPn1038    40.87        102           344           379        shikimate kinase II
CPn1039    43.50         45           249           297        3-phosphoshikimate-1-carboxyvinyltransferase (EpsP
                                                               synthase)
CPn1040    40.33         88           313           381        hypothetical protein
CPn1041    44.65         83           257           341        adenosylmethionine-8-amino-7-oxononanoate
                                                               aminotransferase
CPn1042    42.42        124           322           407        dethiobiotin synthetase (DTB synthetase 2)
CPn1043    41.95        102           261           298        8-amino-7-oxononanoate synthase
CPn1044    43.78        117           303           316        biotin synthase (BIOB)
CPn1045    38.10        112           302           330        conserved hypothetical protein
CPn1046    38.57         78           325           330        conserved hypothetical protein (probable aromatic
                                                               amino acid hydroxylase)
CPn1047    42.39         91           300           367        dihydrodipicolinate reductase
CPn1048    42.42         63           202           260        aspartate semialdehyde dehydrogenase
CPn1049    41.04         63           222           275        aspartokinase-I
CPn1050    42.12         61           223           260        dihydrodipicolinate synthase
CPn1051    32.37 ***    141           440           437        hypothetical protein
CPn1052    36.24 *      101           435           421        hypothetical protein
CPn1053    36.59 *      130           359           380        hypothetical protein
CPn1054    44.75        135           361           454        hypothetical protein
CPn1055    43.08        126           411           497        hypothetical protein
CPn1056    40.99        188           415           480        hypothetical protein
CPn1057    41.42         82           140           232        conserved hypothetical protein
CPn1058    41.85        106           270           332        Chlamydia-specific hypothetical protein
CPn1059    41.73         72           239           287        dimethyladenosine transferase
CPn1060    43.15         66           210           329        transketolase B or a DXP synthase
CPn1061    34.11 **     142           507 *         478        Chlamydia-specific hypothetical protein (acidic)
CPn1062    43.60         95           267           319        exodeoxyribonuclease VII large subunit
CPn1063    43.14         91           293           346        triosephosphate isomerase
CPn1064    41.11        240 **        615 **        651 **     hypothetical protein
CPn1065    36.84 *      209 *         614 **        653 **     hypothetical protein
CPn1066    39.78        134           380           381        hypothetical protein
CPn1067    40.11        154           351           358        polypeptide deformylase (formylmethionine
                                                               deformylase)
CPn1068    39.58         82           327           383        ribonuclease HII
CPn1069    38.66        149           306           366        Chlamydia-specific hypothetical protein (YFGA-
                                                               related)
CPn1070    45.73 *      114           296           309        hypothetical protein
CPn1071    41.03         80           266           265        hypothetical protein
CPn1072    42.76         88           277           363        Chlamydia-specific conserved hypothetical protein
                                                               (possible outer membrane protein)
CPn1073    42.30         62           334           358        Chlamydia-specific conserved hypothetical protein
                                                               (possible outer membrane protein)


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