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Chlamydia trachomatis




Three different base composition analyses were performed on the coding regions in the Chlamydia trachomatis genome: G+C content (%), genome signature, and codon bias. The genome signature and codon bias were determined according to methods established by Samuel Karlin (Trends Microbiol. 2001 Jul;9(7):335-43.). The codon bias of each gene was calculated against both the whole genome and the set of ribosomal proteins. Ribosomal proteins in microbial genomes are typically encoded by genes that have a codon usage distinct from the genome mean values. Ribosomal proteins and genes with codon usage patterns similar to them have been linked to gene expression (Karlin S, Mrazek J. J Bacteriol. 2000 Sep;182(18):5238-50.).Genes that deviate from the genome, but not the set of ribosomal proteins are considered putative highly expressed, whereas genes that deviate from both the genome mean and the ribosomal proteins are considered putative alien genes. Each of these analyses is displayed as well as a measure of deviation from the genome mean value. The table is ordered by gene ID numbers, which reflect genome position. Thus, gene clusters with deviant base composition can be identified. These clusters may have been the result of a lateral gene transfer event and are catalogued in the Genomic Island Table. Genes that are 3 or more standard deviations from the mean in any of the base composition metrics are catalogued the Deviant Gene Table.




Metric Mean Value Standard Deviation
 G+C Content (%) 41.69   2.39  
 Genome Signature 112   47  
 Codon Bias (Genome) 328   101  
 Codon Bias (Ribosomal) 360  94  

Standard deviations are indicated by a number of stars:
*       difference from mean is greater than 1.5  standard deviations
**      difference from mean is greater than 2    standard deviations
***     difference from mean is greater than 3    standard deviations
****    difference from mean is greater than 4    standard deviations
*****   difference from mean is greater than 5    standard deviations





 Gene       G+C        Genome      Codon Bias   Codon Bias     Database
  ID 	  Content(%)  Signature     (Genome)    (Ribosomal)    Definition
-------   -------    -----------   ----------   -----------    --------------------
CT001      42.22        226 **        486 *         502 *      Chlamydia-specific hypothetical protein
CT002      39.33        193 *         375           405        Glu-tRNA Gln amidotransferase C subunit
CT003      43.31         60           272           332        amidase/ Glu-tRNA Gln amidotransferase subunit A
CT004      43.24         73           220           246        Glu-tRNA Gln amidotransferase subunit B
CT005      46.56 **     110           281           348        Chlamydia-specific conserved hypothetical protein
CT006      45.33 *      162           402           444        Chlamydia-specific hypothetical protein (basic)
CT007      40.51         53           257           284        Chlamydia-specific hypothetical protein
CT008      42.33         70           263           329        ribonuclease HII
CT009      40.79         99           323           359        conserved hypothetical protein (YfgA-related)
CT010      41.32         86           225           305        lipid A biosynthesis, lauroyl acyltransferase (htrB)
CT011      37.48 *       64           296           349        Chlamydia-specific hypothetical protein
CT012      42.55        106           279           368        conserved hypothetical protein (basic)
CT013      40.66         94           215           233        cytochrome oxidase D subunit I
CT014      40.42        121           234           293        cytochrome oxidase d subunit II
CT015      40.40         71           284           343        probable PhoH-like protein (ATPase)
CT016      40.63         86           350           338        Chlamydia-specific hypothetical protein (acidic)
CT017      41.11        122           266           214        Chlamydia-specific hypothetical protein (basic)
CT018      44.37         90           398           447        Chlamydia-specific hypothetical protein
CT019      41.96         53           177           205        isoleucyl-tRNA synthetase
CT020      40.45         98           226           277        signal peptidase I
CT021      39.68        173           352           447        Chlamydia-specific hypothetical protein
CT022      41.98        183           473           410        50S ribosomal protein L31
CT023      45.13        102           292           358        peptide chain release factor I
CT024      43.22         92           327           362        hypothetical adenine-specific methylase
CT025      43.45         82           279           315        signal recognition particle GTPase protein (SRP) (54
                                                               kDa)
CT026      42.82        185 *         437           403        30S ribosomal S16 protein
CT027      44.13        113           312           340        tRNA (guanine-N-1)-methyltransferase
CT028      46.01 *      126           407           338        50S ribosomal protein L19
CT029      44.24         68           422           367        ribonuclease HII
CT030      42.11        121           396           413        guanylate kinase
CT031      40.67        171           502 *         447        Chlamydia-specific hypothetical protein (basic)
CT032      41.45         59           280           274        methionyl-tRNA synthetase
CT033      40.35         63           208           302        exodeoxyribonuclease V alpha subunit
CT034      42.91        108           352           407        conserved hypothetical protein (possible integral
                                                               membrane protein)
CT035      45.14        121           357           372        biotin-protein ligase
CT036      41.19         61           259           336        Chlamydia-specific hypothetical protein
CT037      39.27        118           616 **        660 ***    hypothetical protein (basic)
CT038      39.37        128           429           479        Chlamydia-specific hypothetical protein (basic)
CT039      41.58        110           419           475        deoxycytidine triphosphate deaminase
CT039.1    36.00 **     163           636 ***       687 ***    hypothetical protein
CT040      43.31         93           298           326        Holliday Junction DNA helicase (RuvB)
CT041      42.42         81           248           301        Chlamydia-specific hypothetical protein (acidic)
CT042      42.19        109           215           285        glycogen debranching protein
CT043      46.11 *      101           359           373        Chlamydia-specific hypothetical protein (acidic)
CT044      40.34        116           416           381        single strand DNA-binding protein (SSB)
CT045      41.82         68           196           257        Leucyl aminopeptidase
CT046      41.38        471 *******   474           380        histone homolog 2
CT047      38.96        132           327           336        Chlamydia-specific conserved hypothetical protein
                                                               (possible outer membrane protein I)
CT048      42.48         89           301           322        conserved hypothetical protein (possible SAM-
                                                               dependent methyltransferase)
CT049      45.65 *       92           237           289        hypothetical protein (acidic)
CT050      42.04        127           246           316        Chlamydia trachomatis-specific hypothetical protein
                                                               (acidic)
CT051      41.09        110           242           330        conserved hypothetical protein (acidic)
CT052      41.45         94           251           319        oxygen-independent coproporphyrinogen III oxidase
CT053      45.05        174           431           432        Chlamydia-specific hypothetical protein (acidic)
CT054      42.03         82           200           231        alpha-ketoglutarate dehydrogenase (2-oxoglutarate
                                                               dehydrogenase; pyruvate dehydrogenase component E1)
CT055      42.47        124           320           350        dihydrolipoamide succinyltransferase (pyruvate
                                                               dehydrogenase component E2)
CT056      43.90         81           306           319        conserved hypothetical protein
CT057      42.91         72           241           324        conserved hypothetical protein (GCPE family protein)
CT058      44.60        111           304           337        Chlamydia-specific hypothetical protein (basic)
CT059      45.79 *      136           546 **        488        Ferredoxin
CT060      41.43         77           260           318        flagellar biosynthesis and secretion protein
CT061      41.63         99           257           276        RNA polymerase alternative sigma factor, WhiG-like
                                                               (sigma 28-like)
CT062      41.34         62           270           291        tyrosyl-tRNA synthetase
CT063      43.26         89           215           244        6-phosphogluconate dehydrogenase
CT064      40.42         57           199           247        GTP-binding protein (possible membrane protein)
CT065      43.31        121           379           329        ADP/ATP translocase I (carrier protein I)(NPT1)
CT066      40.93        107           313           345        Chlamydia-specific hypothetical protein (basic)
CT067      41.31        100           252           255        ABC transporter, probable solute binding protein;
                                                               adhesin
CT068      41.57        110           289           285        ABC transport system component;  ATP-binding protein
CT069      38.65         68           259           303        ABC transporter membrane protein (MSD)
CT070      37.42 *      119           274           303        membrane protein (ABC transport system component?)
CT071      41.69         89           236           283        conserved hypothetical protein
CT072      42.81         81           199           244        metalloprotease
CT073      39.90         74           275           306        hypothetical protein (basic)
CT074      40.46         83           255           311        RecF protein
CT075      40.71         90           264           312        DNA polymerase III beta chain
CT076      41.94        161           404           411        small protein B (SMPB)
CT077      44.20         78           303           375        conserved hypothetical protein (inner membrane
                                                               lipoprotein)
CT078      44.13        128           340           397        methylenetetrahydrofolate dehydrogenase
CT079      44.22        125           477           510 *      conserved hypothetical protein (basic)
CT080      39.52        137           416           455        Chlamydia-specific hypothetical protein (basic)
                                                               (identical to L40838 sequence)
CT081      37.41 *      224 **        499 *         525 *      chlamydial T2 protein (basic)
CT082      43.27         63           200           245        conserved hypothetical protein (acidic)
CT083      41.46        151           370           428        Chlamydia-specific hypothetical protein (basic)
CT084      38.60         68           244           315        conserved hypothetical protein (possible
                                                               phospholipase D HKD-related)
CT085      42.83         85           224           266        conserved hypothetical protein (with ACR)
CT086      40.45        167           484 *         469        50S ribosomal protein L28
CT087      41.87        107           259           321        4-alpha-glucanotransferase (amylomaltase)
CT088      38.58        147           410           434        probable chaperone for type III pathway
CT089      43.23         93           257           345        putative regulatory molecule for type III pathway
                                                               (low calcium response E)
CT090      42.47         82           230           266        cds2 membrane component of type III pathway (low
                                                               calcium response protein D)
CT091      39.26         56           222           263        cds1 or FlhB-like flagellar protein
CT092      41.71         73           263           342        conserved GTP-binding protein
CT093      41.64         99           314           306        riboflavin kinase/FAD synthase
CT094      41.77        117           324           353        tRNA pseudouridine 55 synthase
CT095      38.21        107           415           430        ribosome binding factor A
CT096      42.75         75           167           183        translation initiation factor IF-2
CT097      40.32         77           229           243        NusA transcription antitermination factor
CT098      40.42        104           319           299        30S ribosomal protein S1
CT099      42.92         88           213           226        NADPH thioredoxin reductase
CT100      43.98        109           489 *         539 *      holo-[acyl-carrier protein] synthase
CT101      38.34        202 *         433           489        Chlamydia-specific hypothetical protein (basic)
CT102      40.96        115           349           392        Chlamydia-specific hypothetical protein (basic)
CT103      38.59         84           304           340        conserved hypothetical protein (acidic) (possible
                                                               HAD-related hydrolase)
CT104      44.52        113           341           402        enoyl-acp reductase
CT105      44.51         98           234           251        conserved hypothetical protein
CT106      42.02         61           245           332        ribosomal large subunit pseudouridine synthase C
                                                               (pseudouridylate synthase) (uracil hydrolyase)
CT107      41.37        102           324           340        A/G-specific adenine glycosylase
CT108      41.97        128           312           305        conserved hypothetical protein; ACR family
CT109      39.44         89           271           304        Chlamydia-specific hypothetical protein
CT110      41.36        131           376           329        60 kD chaperonin (protein cpn60) (GroEL protein) (57
                                                               KD chlamydial hypersensitivity antigen) (Hsp60)
CT111      39.54        147           472           460        10kD chaperonin (protein cpn10)(protein GroES)(11.2
                                                               kD stress response protein) (HSP10)
CT112      40.79         86           244           276        oligoendopeptidase (a metalloprotease)
CT113      40.87         94           216           235        ClpB-related ATP-dependent protease
CT114      42.80         72           338           364        Chlamydia-specific hypothetical protein
CT115      45.86 *      159           499 *         464        hypothetical protein (basic)
CT116      41.41        151           486 *         487        hypothetical protein
CT117      48.08 **     209 **        475           455        hypothetical protein
CT118      43.51        132           351           323        hypothetical protein
CT119      39.19         98           327           410        inclusion membrane protein A
CT120      39.58        151           585 **        612 **     conserved hypothetical protein
CT121      40.34         90           316           343        D-ribulose-phosphate-3 epimerase
CT122      39.82        128           309           380        elongation factor P
CT123      41.67        136           423           401        biotin carrier protein of acetyl-COA carboxylase
                                                               (BCCP)
CT124      41.14         76           250           274        biotin carboxylase
CT125      41.11        141           344           312        50S ribosomal protein L13
CT126      42.64        191 *         467           361        30S ribosomal protein S9
CT127      40.52         95           320           334        P60-related protein
CT128      41.22         96           325           323        adenylate kinase
CT129      40.50        109           331           391        probable amino-acid ABC transporter permease protein
CT130      42.20        129           320           353        glutamine ABC transporter, ATP-binding protein
CT131      40.30        109           225           315        Chlamydia-specific hypothetical protein
CT132      38.20        132           329           332        conserved hypothetical protein (basic)
CT133      42.70        108           292           393        Chlamydia-specific conserved hypothetical protein
                                                               (basic)
CT134      45.50 *      170           454           486        hypothetical protein
CT135      45.19        126           217           285        hypothetical protein
CT136      43.38         91           317           336        probable serine esterase
CT137      39.50        112           277           293        conserved hypothetical protein (possible SuA5 family
                                                               protein)
CT138      40.74         97           267           298        conserved hypothetical protein (probable
                                                               dipeptidase) (acidic)
CT139      42.80         52           256           330        periplasmic oligopeptide ABC transporter
CT140      40.79        112           264           308        conserved hypothetical protein (possible membrane
                                                               protein)
CT141      42.34         85           483 *         511 *      Chlamydia-specific hypothetical protein (possible
                                                               secA fragment)
CT142      41.64         93           268           301        Chlamydia-specific hypothetical protein
CT143      39.17        152           314           371        Chlamydia-specific conserved hypothetical protein
CT144      42.81        120           331           414        Chlamydia-specific hypothetical protein
CT145      44.73         54           230           276        probable serine/threonine kinase
CT146      43.44         56           216           279        DNA ligase (NAD dependent)
CT147      41.98        107           168           193        conserved hypothetical protein
CT148      40.17         66           235           317        monooxygenase
CT149      45.50 *      107           326           351        conserved hypothetical protein (possible a/b
                                                               hydrolase fold member)
CT150      34.62 **     283 ***       564 **        554 **     50S ribosomal protein L33
CT151      41.09         82           210           253        ABC transporter, probable MSD component
CT152      43.26         50           340           436        ABC transporter ATPase
CT153      40.70         48           215           280        Chlamydia-specific hypothetical protein
CT154      42.65        113           326           335        conserved hypothetical protein (possible
                                                               phospholipase D HKD-related)
CT155      42.49        126           321           373        conserved hypothetical protein (basic)(possible
                                                               phospholipase D HKD-related protein)
CT156      49.85 ***    290 ***       660 ***       735 ***    hypothetical protein (basic)
CT157      39.44         70           271           328        conserved hypothetical protein (basic)(possible
                                                               phospholipase D HKD-related protein)
CT158      44.82        133           448           506 *      conserved hypothetical protein (possible
                                                               phospholipase D protein)
CT159      43.01         95           305           284        Chlamydia trachomatis-specific hypothetical protein
CT160      40.52        168           388           463        hypothetical protein
CT161      38.08 *       69           336           380        Chlamydia trachomatis-specific hypothetical protein
                                                               (basic)
CT162      43.46        154           571 **        599 **     Chlamydia trachomatis-specific hypothetical protein
CT163      38.87         66           245           339        Chlamydia trachomatis-specific hypothetical protein
CT164      40.70        176           639 ***       641 **     hypothetical protein
CT165      41.67        195 *         375           397        hypothetical protein (basic)
CT166      40.38         70           186           212        toxin B-related protein
CT167      39.58         84           237           316        hypothetical protein
CT168      43.00        181           512 *         542 *      hypothetical protein
CT169      37.23 *      206 *         524 *         549 **     Trp operon repressor
CT170      41.92         78           270           343        tryptophan synthase beta subunit
CT171      38.60         56           355           410        tryptophan synthase alpha chain
CT172      33.13 ***    161           322           347        hypothetical protein
CT172.1    36.31 **     216 **        562 **        628 **     hypothetical protein
CT173      35.56 **     105           555 **        566 **     hypothetical protein (basic)
CT174      35.76 **     113           347           404        Chlamydia trachomatis-specific hypothetical protein
                                                               (basic)
CT175      36.67 **      69           281           307        oligopeptide binding protein
CT176      37.78 *      216 **        381           415        conserved hypothetical protein (possible disulfide
                                                               bond formation protein B) (possible disulfide
                                                               oxidoreductase)
CT177      38.30         80           327           327        conserved hypothetical protein; possible disulfide
                                                               bond chaperone
CT178      37.38 *      107           265           312        Chlamydia-specific hypothetical protein
CT179      38.63         93           365           424        Chlamydia-specific hypothetical protein
CT180      40.14         81           330           372        ABC transporter (exact function unknown)
CT181      39.41         83           278           300        Chlamydia-specific hypothetical protein (acidic)
CT182      42.13         80           326           381        CMP-2-keto-3-deoxyoctulosonic acid synthetase (CMP-
                                                               KDO synthetase)
CT183      41.37         43           226           278        CTP synthetase (UTP ammonia ligase)
CT184      42.34        134           385           441        conserved hypothetical protein (basic)(YqgF family)
CT185      39.10         59           235           276        glucose-6-phosphate dehydrogenase
CT186      41.28         77           287           368        DevB protein (putative oxidoreductase)
CT187      40.92         62           273           302        DNA polymerase III subunits gamma and tau
CT188      42.04        104           362           348        thymidylate kinase (DTMP)
CT189      41.35         71           155           224        DNA gyrase subunit A (topoisomerase)
CT190      40.30         64           198           218        DNA gyrase subunit B (topoisomerase)
CT191      39.08        148           403           453        Chlamydia-specific hypothetical protein (basic)
CT192      40.86        113           329           317        hypothetical protein (acidic)
CT193      42.47        106           254           324        tRNA-guanine transglycosylase (queuine tRNA
                                                               ribosyltransferase))
CT194      40.78         82           250           310        Mg2+ transport protein (CBS Domain)
CT195      43.16        133           282           346        Chlamydia-specific hypothetical protein (basic)
CT196      39.31        170           480 *         487        Chlamydia trachomatis-specific hypothetical protein
CT197      43.20         99           281           326        O-sialoglycoprotein endopeptidase (glycoprotease)
CT198      40.35         67           209           279        periplasmic oligopeptide-binding protein precursor
                                                               or ABC-type dipeptide transport protein
CT199      38.34        124           318           364        oligopeptide ABC transporter (permease)
CT200      39.03         80           320           376        dipeptide ABC transporter
CT201      42.12         71           307           365        oligopeptide ABC transporter
CT202      37.79 *       78           288           328        oligopeptide ABC transporter protein
CT203      39.95         97           366           380        Chlamydia-specific hypothetical protein (acidic)
CT204      39.99        124           269           347        oxoglutarate/malate translocator protein
CT205      38.70         61           207           279        pyrophosphate-fructose 6-phosphate 1-
                                                               phosphotransferase (alpha or beta subunit)
CT206      40.78         88           308           345        conserved hypothetical protein (possible a/b
                                                               hydrolase family protein)
CT207      38.69         73           216           247        pyrophosphate-fructose 6-phosphate 1-
                                                               phosphotransferase (alpha or beta subunit?)
CT208      38.28         72           256           298        3-deoxy-D-manno-2-octulosonic acid (KDO) transferase
CT209      42.69         38           179           222        leucyl-tRNA synthetase
CT210      42.26         88           266           293        glutamate-1-semialdehyde 2,1-aminomutase
CT211      40.04        110           328           349        conserved hypothetical protein (acidic)
CT212      38.74        154           353           415        conserved hypothetical protein (acidic)
CT213      43.25         82           295           346        ribose 5-phosphate isomerase
CT214      39.61         91           278           265        Chlamydia trachomatis-specific hypothetical protein
                                                               (basic)
CT215      42.62         51           294           320        fructose-bisphosphate aldolase class I (FBP
                                                               aldolase)
CT216      40.56         78           204           269        putative amino acid antiporter protein
CT217      43.87        105           339           391        conserved hypothetical protein (probable PPloop
                                                               ATPase member)
CT218      42.21        110           296           361        SURE-related acid phosphatase
CT219      38.19        127           322           357        4-hydroxybenzoate octaprenyltransferase
CT220      40.10        128           358           425        phenylacrylic acid decarboxylase (PAD), 3-
                                                               octaprenyl-4-hydroxybenzoate carboxy-lyase
CT221      40.72         87           300           300        conserved hypothetical protein (related to YqfU-
                                                               BACSU)
CT221.1    40.58        291 ***       589 **        590 **     hypothetical protein-possible frameshift with CT222;
                                                               possible C. trachomatis-specific
CT222      38.50        141           458           464        Chlamydia trachomatis-specific hypothetical protein
                                                               (possible endonuclease)
CT223      41.73        164           269           305        Chlamydia-specific conserved hypothetical protein
CT224      40.59        145           388           374        hypothetical protein (acidic)
CT225      38.80        169           392           436        hypothetical protein
CT226      39.96        130           403           398        hypothetical protein (acidic)
CT227      39.85         98           410           445        hypothetical protein
CT228      40.48        166           415           358        Chlamydia-specific conserved hypothetical protein
                                                               (acidic)
CT229      42.95        150           317           323        hypothetical protein
CT230      42.41        124           311           363        glutamate/aspartate transport carrier permease
CT231      40.41        136           245           323        sodium-dependent transporter
CT232      42.03        167           480 *         557 **     inclusion membrane protein B/incB
CT233      45.51 *      105           338           349        inclusion membrane protein C/incC
CT234      39.80         65           196           263        Chlamydia-specific hypothetical protein
CT235      36.74 **      87           423           498        cAMP or cGMP-dependent regulatory subunit type II
CT236      38.53        173           425           430        acyl carrier protein (acp)
CT237      42.07         99           330           271        3-oxyacyl [acyl-carrier protein] reductase
CT238      41.34         87           308           300        malonyl CoA-acyl carrier protein transacetylase
CT239      43.43         71           331           356        3-oxyacyl-[acyl-carrier protein] synthase (KAS III
                                                               or FABH
CT240      35.33 **     172           372           384        Recombination/repair protein
CT241      38.59         83           204           256        probable outer membrane protein (Omp85 analog)
CT242      37.38 *      130           355           352        probable outer membrane protein
CT243      41.81        113           234           269        UDP-3-O-(R-3-hydoxymyristoyl)-glucosamine-N-
                                                               acyltransferase
CT244      36.68 **      97           269           342        Chlamydia-specific hypothetical protein
CT245      41.76         76           306           373        pyruvate dehydrogenase E1 alpha subunit
CT246      40.75         93           337           354        pyruvate dehydrogenase E1 beta subunit
CT247      39.78        101           293           321        pyruvate dehydrogenase E2 component
                                                               (dihydrolipoamide acetyltransferase)
CT248      38.49         66           189           255        alpha glycan phosphorylase
CT249      44.83        129           404           433        hypothetical protein
CT250      39.77         73           254           282        DNAA replication protein
CT251      39.73         57           200           188        60 kDa inner membrane protein
CT252      41.30        110           338           366        prolipoprotein diacylglyceryl transferase
CT253      42.33        129           329           308        Chlamydia-specific hypothetical protein (basic)
CT254      40.49        139           241           318        conserved hypothetical protein (basic)
CT255      40.16        134           494 *         470        conserved hypothetical protein (acidic)
CT256      39.53         82           274           347        conserved hypothetical protein (hemolysin with CBS
                                                               domains)
CT257      38.37         80           228           273        conserved hypothetical protein (CBS domain)
CT258      40.82         84           242           275        NIFS-like aminotransferase
CT259      39.78         82           309           331        probable protein phosphatase
CT260      40.08         90           405           403        Chlamydia-specific hypothetical protein (acidic)
CT261      40.52         98           286           310        DNA polymerase III alpha/epsilon chain
CT262      38.93         92           341           342        conserved hypothetical protein
CT263      39.80        103           337           408        Chlamydia-specific hypothetical protein
CT264      38.80         92           196           260        ABC transporter protein, MSD-NBD fusion protein
CT265      41.46         78           234           295        acetyl-CoA carboxylase transferase (alpha subunit)
CT266      40.20        106           281           254        Chlamydia-specific hypothetical protein
CT267      37.00 *      166           465           410        histone-like DNA binding protein, IHFA, IHFB, or DBH
CT268      40.41        108           340           343        probable N-acetylmuramoyl-l-alanine amidase
CT269      39.61        115           322           308        N-acetylymuramoylalanyl-D-glutamate-2,6-
                                                               diaminopimelate ligase
CT270      40.19         72           245           289        penicillin binding protein 2
CT271      35.79 **     150           563 **        622 **     Chlamydia-specific hypothetical protein (acidic)
CT272      41.11         96           328           353        conserved hypothetical protein
CT273      39.18         94           305           355        Chlamydia-specific hypothetical protein (basic)
CT274      41.73        105           399           465        Chlamydia-specific hypothetical protein (acidic)
CT275      37.88 *       81           222           247        DNAA replication protein
CT276      41.24        141           409           446        conserved hypothetical protein (acidic)
CT277      36.38 **     132           406           428        Chlamydia-specific hypothetical protein (basic)
CT278      42.08         62           227           273        NADH dehydrogenase (ubiquinone)
CT279      40.61         98           326           352        Na+-translocating NADH-quinone reductase, chain
                                                               gamma (possible nqr3)
CT280      40.53         96           369           349        Na+-translocating NADH-quinone reductase
CT281      40.57        167           351           415        Na+-translocating NADH-quinone reductase
CT282      37.04 *      128           402           446        glycine cleavage H protein (glycine decarboxylase
                                                               component)
CT283      38.49        102           214           226        Chlamydia-specific hypothetical protein
CT284      38.61         82           263           304        conserved hypothetical protein (possible
                                                               phospholipase D HKD-related protein
CT285      39.75        114           247           247        lipoate-protein ligase
CT286      41.30         65           170           209        CLP protease ATP-binding subunit (CLPA/CLPB/CLPC)
CT287      42.09        107           286           324        probable tRNA-(5-methylaminomethyl-2-thiouridylate)
                                                               methyltransferase, TrmU.
CT288      40.85         82           219           305        Chlamydia-specific hypothetical protein
CT289      42.92        150           295           257        conserved hypothetical protein (basic)
CT290      39.85        109           322           328        nitrogen regulatory IIa protein
CT291      41.35        116           408           406        nitrogen regulatory IIa domain protein (PTS
                                                               IIA)(phosphotransferase)
CT292      45.98 *       55           396           395        deoxyuridine 5'-triphosphate nucleotidohydrolase
                                                               (dUTPase)
CT293      41.34         65           283           278        acetyl-CoA carboxylase subunit beta
CT294      40.61        140           348           381        superoxide dismutase precursor
CT295      41.32         62           256           307        phosphomannomutase
CT296      45.59 *      109           436           447        divalent cation-dependent regulator A
CT297      39.68        126           401           433        ribonuclease III
CT298      40.38         67           298           381        RadA-related DNA repair protein (sms)
CT299      43.98         75           283           358        porphobilinogen deaminase (pre-uroporphyrinogen
                                                               synthase or hydroxymethylbilane synthase)
CT300      44.64        226 **        502 *         517 *      hypothetical protein (basic)
CT301      40.22         66           156           185        probable serine/threonine kinase
CT302      40.26         38           182           188        valyl-tRNA synthetase
CT303      40.94        149           335           344        Chlamydia-specific hypothetical protein
CT304      43.02        212 **        344           353        vacuolar ATP synthase K subunit
CT305      38.57         67           262           353        probable vacuolar ATPase subunit I
CT306      37.93 *      106           325           354        probable ATP synthase subunit D
CT307      39.88         84           237           253        ATP synthase beta chain
CT308      42.75         37           230           249        ATP synthase alpha chain
CT309      37.09 *      114           286           309        Chlamydia-specific hypothetical protein (possibly
                                                               related to V-ATP synthase)
CT310      42.95        219 **        331           289        possible ATP synthase subunit E
CT311      41.10        104           315           370        Chlamydia-specific hypothetical protein (basic)
CT312      40.65        187 *         447           448        Chlamydia-specific hypothetical protein (possible
                                                               ferredoxin)
CT313      40.98         83           317           292        transaldolase
CT314      42.53         75           244           179        DNA-directed RNA polymerase beta prime chain
CT315      41.91         65           205           189        DNA-dependent RNA polymerase beta subunit
CT316      43.08        308 ****      503 *         391        50S ribosomal protein L7/L12
CT317      39.92        177           413           330        50S ribosomal protein L10
CT318      43.39        151           324           281        50S ribosomal protein L1
CT319      40.66        134           412           355        50S ribosomal protein L11
CT320      40.84        146           331           341        transcription antiterminator
CT321      33.74 ***    149           540 **        497        Chlamydia-specific conserved hypothetical protein
                                                               (basic) (possible preprotein translocase secE
                                                               sequence)
CT322      43.57        108           385           270        elongation factor Tu
CT323      45.66 *      187 *         515 *         534 *      translation initiation factor IF-1
CT324      43.23         90           315           384        Chlamydia-specific hypothetical protein (basic)
CT325      39.86         85           313           338        conserved hypothetical protein
CT326      44.64        108           269           326        Chlamydia-specific hypothetical protein
CT326.1    43.01        187 *         597 **        620 **     hypothetical protein
CT326.2    43.89        226 **        650 ***       609 **     hypothetical protein
CT327      42.15        103           283           309        phosphoribosylanthranilate isomerase
CT328      41.48        112           367           391        triosephosphate isomerase
CT329      41.34         94           231           307        exodeoxyribonuclease VII large subunit
CT330      44.44         76           544 **        598 **     Chlamydia-specific hypothetical protein (acidic)
CT331      41.41         65           211           270        transketolase B or a DXP synthase
CT332      42.82         80           231           327        pyruvate kinase
CT333      41.81         69           177           267        excinuclease ABC subunit A
CT334      41.63         57           255           339        DNA polymerase III subunits gamma and tau
CT335      42.71        160           371           404        conserved hypothetical protein (acidic); YbaB family
                                                               hypothetical protein
CT336      41.04         88           328           332        PEP protein phosphotransferase
CT337      45.57 *      136           464           475        phosphocarrier protein HPR
CT338      34.42 ***    145           396           441        Chlamydia-specific hypothetical protein
CT339      40.28        111           320           413        conserved hypothetical protein (basic)
CT340      43.51         68           239           220        2-oxoisovalerate dehydrogenase alpha and beta
                                                               subunits
CT341      45.58 *       64           301           246        DnaJ protein
CT342      37.36 *      201 *         467           460        30S ribosomal protein S21
CT343      41.43        126           326           312        probable sialoglycoprotease
CT344      41.23         46           237           317        ATP-dependent protease LA
CT345      40.77        153           464           523 *      Chlamydia-specific hypothetical protein (basic)
CT346      41.78         89           287           335        conserved hypothetical protein (probable hydrolase)
CT347      40.63        102           287           350        integrase/recombinase XerC-related
CT348      41.79         46           216           251        ABC transporter protein, NBD-NBD fusion protein
CT349      41.33         72           235           278        MAF protein (MAF/YMDE/YCEF related)
CT350      40.11        116           245           316        Chlamydia-specific hypothetical protein
CT351      39.26         77           192           255        Chlamydia-specific hypothetical protein (basic)
CT352      39.93        133           532 **        610 **     hypothetical protein (basic)
CT353      38.31         75           413           423        polypeptide deformylase (formylmethionine
                                                               deformylase)
CT354      41.64        110           311           339        dimethyladenosine transferase
CT355      43.15         65           324           329        Chlamydia-specifc hypothetical protein
CT356      40.81         67           205           249        conserved hypothetical protein (YYAL_BACSU related)
CT357      43.64         90           408           470        hypothetical protein (basic)
CT357R     39.30        155           557 **        611 **     hypothetical protein (basic)
CT358      44.94        145           360           428        hypothetical protein (acidic)
CT359      40.82        136           314           347        probable biotin synthase
CT360      38.14        181           301           284        Chlamydia-specific hypothetical protein (acidic)
CT361      43.24         95           363           347        dihydrodipicolinate synthase
CT362      41.38        105           284           290        aspartokinase-I
CT363      40.42         94           388           382        aspartate semialdehyde dehydrogenase
CT364      40.97         94           333           294        dihydropicolinate reductase
CT365      41.74         89           248           265        Chlamydia-specific hypothetical protein (basic)
CT366      44.09         82           299           351        3-phosphoshikimate-1-carboxyvinyltransferase (EpsP
                                                               synthase)
CT367      42.21        118           294           324        shikimate kinase
CT368      45.85 *       69           259           330        chorismate synthase
CT369      40.39        118           358           404        3-dehydroquinate synthase
CT370      42.47         52           260           342        dehydroquinate dehydratase/shikimate dehydrogenase
CT371      39.72         65           305           357        Chlamydia-specific conserved hypothetical protein
CT372      43.44         93           290           328        Chlamydia-specific hypothetical protein (basic)
CT373      41.20        121           456           472        Chlamydia-specific hypothetical protein
CT374      41.06        121           246           330        arginine/ornithine antiporter
CT375      46.31 *      139           291           360        conserved hypothetical; probable D-amino acid
                                                               dehydrogenase
CT376      44.58        106           248           325        malate dehydrogenase
CT377      39.86        342 ****      600 **        608 **     Chlamydia-specific hypothetical protein (basic)
CT378      41.40        103           261           260        glucose-6-phosphate isomerase
CT379      40.12         78           322           348        HFLX-related GTP-binding protein
CT380      40.60        139           347           395        probable PhnP-like protein
CT381      41.63         68           258           282        ABC transporter, probable solute binding protein;
                                                               possible arginine-binding periplasmic protein 2
CT382      42.45         61           305           374        phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP
                                                               synthase)
CT382.1    33.86 ***    266 ***       579 **        630 **     Chlamydia-specific hypothetical protein
CT383      44.72        170           461           487        Chlamydia-specific hypothetical protein
CT384      42.30        116           246           291        Chlamydia-specific hypothetical protein
CT385      41.14        127           453           464        protein kinase C inhibitor (HIT family protein)
CT386      42.15        126           322           313        conserved hypothetical protein (YEY6-like)
CT387      43.22         51           284           361        Chlamydia-specific hypothetical protein
CT388      38.84        186 *         455           432        conserved hypothetical protein (basic)
CT389      42.32         68           306           322        Chlamydia-specific hypothetical protein
CT390      41.92         87           278           343        aspartate aminotransferase
CT391      40.10         98           271           313        Chlamydia-specific hypothetical protein
CT392      47.13 **     126           295           328        Chlamydia-specific hypothetical protein
CT393      43.03         89           280           329        prolyl-tRNA synthetase
CT394      41.07         84           298           341        heat inducible transcription regulator HrcA
CT395      40.70        131           378           438        GrpE-related chaperonin; HSP-70 cofactor
CT396      42.78        117           279           251        DnaK protein (Hsp70)
CT397      42.17         51           149           214        ribonuclease II (VacB-related)
CT398      40.16        161           314           342        conserved hypothetical protein
CT399      40.45        110           256           299        conserved hypothetical protein (possible sugar
                                                               phosphate isomerase)
CT400      43.21         77           267           283        dihydrolipoamide 5-succinyltransferase
CT401      42.39         96           270           306        proton/sodium:glutamate symporter protein
CT402      44.23         74           277           319        probable tetraacyldisaccharide 4'kinase
CT403      39.41        105           308           332        23S rRNA methyltransferase
CT404      42.55         52           293           311        conserved hypothetical protein (probable methylase)
CT405      42.21        126           352           404        riboflavin synthase alpha subunit
CT406      38.74        114           435           491        conserved hypothetical protein (basic)
CT407      38.98         81           352           381        probable DNAK suppressor protein
CT408      42.12        175           433           463        prolipoprotein signal peptidase (LSPA-related)
CT409      42.31         78           256           309        alanine glycine carrier permease/ sodium-dependent
CT410      39.14         81           293           308        poly(A) polymerase (PAP)/tRNA nucleotidyltransferase
CT411      40.80         73           224           307        lipid A disaccharide synthase
CT412      40.72         94           272           331        outer membrane protein A (approx. 98 kDa)
CT413      42.34        111           232           288        outer membrane protein B
CT414      41.83        130           246           274        outer membrane protein C (Chlamydia-specific)
CT415      40.22         75           281           302        ABC transporter, probable solute binding protein;
                                                               adhesin
CT416      43.64        142           353           435        ABC transporter, ATP-binding protein (zinc uptake?)
CT417      42.09        159           313           381        ABC transporter, probable MSD element; chelated
                                                               metal transport system membrane protein
CT418      43.28         80           230           266        GTP-binding protein (OBG related)
CT419      45.38 *      196 *         501 *         463        50S ribosomal protein L27
CT420      40.50        175           420           356        50S ribosomal protein L21
CT421      41.77        118           326           387        Chlamydia-specific hypothetical protein (basic)
CT421.1    44.03        303 ****      669 ***       624 **     Chlamydia-specific hypothetical protein
CT421.2    45.91 *      219 **        721 ***       707 ***    Chlamydia-specific hypothetical protein
CT422      40.37        110           319           343        conserved hypothetical protein (acidic)(possible
                                                               metalloenzyme)
CT423      41.28         78           333           371        conserved hypothetical protein (acidic) (hemolysin
                                                               C) (tlyC)
CT424      39.66        178           458           492        anti-sigma factor/sporulation-related protein
CT425      41.28         97           207           242        Chlamydia-specific hypothetical protein (acidic)
CT426      41.64         61           230           250        probable biotin synthetase/lipoic acid synthetase
CT427      40.90        104           258           327        conserved hypothetical protein
CT428      43.52        109           349           431        probable ubiquinone/menaquinone methyltransferase
CT429      40.02        180           297           302        Chlamydia-specific hypothetical protein (acidic)
CT430      41.33         48           325           308        diaminopimelate epimerase
CT431      42.36        100           287           309        ATP-dependent ClpP endopeptidase
CT432      42.92         97           264           308        serine hydroxymethyltransferase
CT433      42.30        122           399           464        Chlamydia-specific hypothetical protein (basic)
CT434      42.51         80           306           342        conserved hypothetical protein (YGBB family)
CT435      40.48        120           325           356        probable sulfite reductase
CT436      40.00        115           444           397        30S ribosomal protein S10
CT437      43.32         84           266           200        elongation factor G protein
CT438      43.74        119           458           374        30S ribosomal protein S7
CT439      45.80 *      179           556 **        478        30S ribosomal protein S12
CT440      38.10 *      159           524 *         587 **     hypothetical protein (basic)
CT441      40.94         55           236           311        probable tail-specific protease
CT442      40.67        142           493 *         553 **     Chlamydia-specific hypothetical cysteine-rich 15 kD
                                                               outer membrane protein
CT443      41.95        171           245           226        Chlamydia-specific cysteine-rich hypothetical outer
                                                               membrane protein 60 kDa
CT444      44.70        178           562 **        496        Chlamydia-specific hypothetical cysteine-rich outer
                                                               membrane protein 9 kDa (small Crp)
CT444.1    42.79        224 **        523 *         581 **     Chlamydia-specific hypothetical protein
CT445      43.35         47           228           253        glutamyl-tRNA synthetase
CT446      43.35        132           312           278        Chlamydia-specific hypothetical protein (Ygt2-
                                                               related)
CT447      41.10         78           247           330        single-strand DNA-specific exonuclease
CT448      41.31         64           172           214        protein translocation membrane protein SecF
CT449      41.52        158           545 **        523 *      hypothetical protein
CT450      42.82        104           326           384        undecaprenyl phosphate synthetase
CT451      42.19         76           267           321        phosphatidate cytidylytransferase (CDP diglyceride
                                                               synthetase)
CT452      44.44        110           274           342        cytidylate kinase
CT453      44.29        114           435           460        1-acyl-sn-glycerol-3-phosphate acyltransferase
CT454      42.69         81           299           374        arginyl-tRNA synthetase
CT455      44.14         64           264           317        UDP-N-acetylglucosamine-1-carboxyvinyltransferase
CT456      45.90 *      109           269           327        conserved hypothetical protein (acidic) (related to
                                                               outer membrane proteins)
CT457      42.02         90           364           389        conserved hypothetical protein (YEBC-related)
CT458      40.12         91           391           434        conserved hypothetical protein(YhhY related
                                                               acetyltransferase?)
CT459      40.63         66           371           429        peptide chain release factor RF-2
CT460      37.98 *      150           445           392        conserved hypothetical protein (basic)
CT461      41.03         68           202           263        conserved hypothetical protein (basic)
CT462      45.36 *       88           322           390        probable sugar phosphorylase (YgbP-like, YacM-like)
CT463      42.82         97           361           427        pseudouridylate synthetase
CT464      41.22        118           373           432        conserved hypothetical protein (acidic)(possible
                                                               phosphoglycolate phosphatase)
CT465      43.19        143           353           407        Chlamydia-specific hypothetical protein
CT466      35.17 **     244 **        377           441        Chlamydia-specific hypothetical protein (basic)
CT467      41.95         86           329           399        two-component sensor histidine kinase (ATOS-related)
CT468      41.62         92           306           376        two-component sensor system regulatory subunit
                                                               (ATOC-like, NTRC-like)
CT469      44.01        125           453           512 *      Chlamydia-specific hypothetical protein
CT470      40.74        137           434           488        Chlamydia-specific hypothetical protein
CT471      40.50         97           365           368        Chlamydia-specific hypothetical protein
CT472      42.17        135           539 **        579 **     conserved hypothetical protein
CT473      49.68 ***     90           494 *         513 *      conserved hypothetical protein (basic)
CT474      41.07         46           283           332        conserved hypothetical protein
CT475      43.08         39           177           273        phenylalanyl-tRNA synthetase beta subunit
CT476      42.99         88           280           308        Chlamydia-specific hypothetical protein
CT477      47.45 **     121           453           525 *      methylated DNA-protein-cysteine S-methyltransferase
CT478      41.46         63           267           275        oligopeptide transport system permease
CT479      40.72         85           231           282        oligopeptide transport system permease (dipeptide
                                                               permease?)
CT480      41.81        112           233           287        ABC transporter solute binding protein; oligopeptide
                                                               transport system
CT480.1    40.12        249 **        716 ***       690 ***    hypothetical protein
CT481      40.05        121           327           356        conserved hypothetical protein (YcdR-related)
CT482      40.25        117           402           404        Chlamydia-specific hypothetical protein (basic)
CT483      48.76 **     174           520 *         570 **     Chlamydia-specific hypothetical protein (basic)
CT484      38.65         81           304           335        Chlamydia-specific hypothetical protein  (basic)
CT485      42.04        116           308           363        ferrochelatase
CT486      39.97        110           344           359        probable periplasmic glutamine transport protein
CT487      40.70         82           338           318        probable YhhF-related methylase
CT488      44.67        111           312           321        Chlamydia-specific hypothetical protein
CT489      40.29        134           178           277        ADP-glucose pyrophosphorylase
CT490      40.56        153           522 *         581 **     hypothetical protein
CT491      44.18         77           285           268        transcription termination factor rho
CT492      38.28         93           363           378        conserved hypothetical protein (ATPase or kinase)
CT493      42.03         77           261           292        DNA polymerase I
CT494      42.57         89           186           249        protein protease IV/endopeptidase IV
CT495      44.38         74           232           281        ribonucleoside triphosphate translocase (Npt2)
CT496      41.47        135           408           412        phosphatidylglycerophosphate synthase
CT496.1    44.22        353 *****     640 ***       688 ***    hypothetical protein
CT497      41.60         97           307           321        replicative DNA helicase
CT498      42.95         60           194           223        glucose inhibited division protein A
                                                               (oxidoreductase)
CT499      39.77         93           330           375        lipoate protein ligase
CT500      40.43         93           360           395        nucleoside diphosphate kinase
CT501      39.67        125           364           387        Holliday junction DNA helicase RuvA
CT502      40.78        131           423           382        Holliday junction endodeoxyribonuclease
CT503      38.22        211 **        333           341        conserved hypothetical protein
CT504      41.32        179           333           307        Chlamydia-specific hypothetical protein (acidic)
CT505      41.52         68           282           281        glyceraldehyde 3-phosphate dehydrogenase
CT506      38.53        166           527 *         440        50S ribosomal protein L17
CT507      40.94         78           257           193        RNA polymerase alpha subunit
CT508      43.69        200 *         390           368        30S ribosomal protein S11
CT509      40.98        105           426           372        30S ribosomal protein S13
CT510      41.79         75           273           302        protein translocase SecY subunit
CT511      41.67        157           374           345        50S ribosomal protein L15
CT512      42.63        117           431           425        30S ribosomal protein S5
CT513      38.75        133           497 *         473        50S ribosomal protein L18
CT514      42.81        143           322           312        50S ribosomal protein L6
CT515      41.10        141           405           361        30S ribosomal protein S8
CT516      40.37         57           370           351        50S ribosomal protein L5
CT517      39.94        147           439           413        50S ribosomal protein L24
CT518      42.90        182           439           425        50S ribosomal protein L14
CT519      42.97        232 **        390           420        30S ribosomal protein S17
CT520      37.50 *      287 ***       466           439        50S ribosomal protein L29
CT521      43.48        155           421           370        50S ribosomal protein L16
CT522      43.45        131           307           238        30S ribosomal protein S3
CT523      45.35 *      165           466           434        50S ribosomal protein L22
CT524      41.29        199 *         410           330        30S ribosomal protein S19
CT525      44.01         96           310           291        50S ribosomal protein L2
CT526      40.54        167           484 *         428        50S ribosomal protein L23
CT527      42.34        110           345           334        50S ribosomal protein L4
CT528      44.04        164           315           301        50S ribosomal protein L3
CT529      48.66 **     126           328           344        Chlamydia-specific hypothetical protein
CT530      46.52 **      81           261           279        methionyl-tRNA formyltransferase
CT531      45.00        108           264           319        UDP-N-acetylglucosamine acyltransferase
CT532      40.74        131           396           404        (3R)-hydroxymyristoyl-acp-dehydratase
CT533      45.22        111           351           375        UDP-3-O-acyl-GlcNAc deacetylase
CT534      42.99         99           230           272        apolipoprotein N-acyltransferase
CT535      41.46        136           406           469        acyl CoA thioester hydrolase
CT536      38.53         97           298           357        DNA polymerase III alpha chain
CT537      45.01        142           445           404        conserved hypothetical protein (acidic) (possible
                                                               ATPase or kinase)
CT538      39.64        121           397           344        Chlamydia-specific hypothetical protein
CT539      43.46        130           429           471        thioredoxin
CT540      41.28        123           398           482        ribosomal RNA methylase
CT541      39.51         65           265           268        FkbP-type peptidyl-prolyl cis-trans isomerase (MIP-
                                                               like protein)
CT542      41.81         85           273           289        aspartyl-tRNA synthetase
CT543      41.74        103           293           309        histidyl-tRNA synthetase
CT544      43.27         84           277           284        hexose phosphate transport system regulatory protein
                                                               (UHPC-related)
CT545      41.50         47           199           262        DNA polymerase III alpha chain
CT546      38.75         98           333           342        Chlamydia-specific hypothetical protein
CT547      40.04        118           259           318        Chlamydia-specific hypothetical protein
CT548      40.55         97           382           464        Chlamydia-specific hypothetical protein
CT549      42.24         85           393           438        conserved hypothetical protein
CT550      39.24        102           434           455        Chlamydia-specific hypothetical protein (acidic)
CT551      43.34         72           233           278        D-alanyl-D-alanine carboxypeptidase (penicillin
                                                               binding protein 6)
CT552      40.74        120           503 *         577 **     hypothetical protein (basic)
CT553      44.51        103           319           385        FMU/SUN-related methyltransferase
CT554      42.17         86           293           327        branched-chain amino acid transport protein
CT555      40.31         55           222           316        SNF2 Helicase
CT556      49.27 ***    102           367           424        Chlamydia-specific hypothetical protein (acidic)
CT557      45.52 *       81           317           394        pyruvate dehydrogenase E3 component
                                                               (dihydrolipoamide dehydrogenase)
CT558      44.27         83           261           337        lipoic acid synthetase
CT559      44.38         81           310           393        flagellar M-ring protein (YopJ translocation
                                                               protein)
CT560      42.33         74           299           373        Chlamydia-specific hypothetical protein
CT561      42.45        101           408           458        flagellar assembly protein fliH (YopL translocation
                                                               protein)
CT562      42.92         82           324           357        flagellar biosynthetic protein (FliP) (YopR
                                                               translocation protein)
CT563      37.59 *      235 **        416           414        flagellar biosynthesis protein (YopS translocation
                                                               protein/ FLIQ))
CT564      43.48        104           281           362        flagellar biosynthesis- YopT translocation protein
                                                               (FLIR or YSCT-related)
CT565      43.54        124           391           454        Chlamydia-specific hypothetical protein
CT566      41.21         74           262           270        Chlamydia-specific hypothetical protein (basic)
CT567      41.95        120           420           456        Chlamydia-specific hypothetical protein (basic)
CT568      45.70 *       92           464           533 *      Chlamydia-specific hypothetical protein (acidic)
CT569      40.67        131           436           440        Chlamydia-specific hypothetical protein
CT570      43.05         55           301           344        type II secretion pathway protein (protein F).
CT571      45.04         73           190           264        general secretion pathway protein type E-related
                                                               (GSPE)
CT572      42.68         77           179           266        type II secretion pathway protein (protein D)
CT573      46.86 **      72           327           362        Chlamydia-specific hypothetical protein
CT574      44.10         75           279           336        Probable XAA-PRO aminopeptidase
CT575      44.39         55           251           264        DNA mismatch repair protein
CT576      40.80        126           368           391        low calcium response locus H protein
CT577      38.66        117           413           438        Chlamydia-specific hypothetical protein
CT578      44.97        149           228           323        Chlamydia-specific hypothetical protein (basic)
CT579      49.35 ***    123           281           388        conserved hypothetical protein (basic)
CT580      43.43         94           284           316        conserved hypothetical protein
CT581      43.03         59           192           248        threonyl-tRNA synthetase
CT582      42.61         88           370           454        SpoOJ regulator (chromosome partitioning ATPase)
CT583      39.04        153           303           366        Chlamydia-specific hypothetical protein (basic)
CT584      40.44        147           378           447        Chlamydia-specific hypothetical protein
CT585      41.33         79           333           406        tryptophanyl t-RNA synthetase
CT586      42.76         91           305           376        excinuclease ABC subunit B
CT587      42.85         82           239           318        enolase (phosphopyruvate hydratase) (2-
                                                               phosphoglycerate dehydratase)
CT588      40.62         56           215           279        probable sensory transduction regulatory component
CT589      40.14         85           283           340        Chlamydia-specific hypothetical protein
CT590      39.94         88           268           332        Chlamydia-specific hypothetical protein
CT591      42.53        124           295           310        succinate dehydrogenase iron-sulfur subunit
CT592      43.34        109           254           306        fumarate reductase/succinate dehydrogenase
                                                               flavoprotein subunit
CT593      40.39        127           356           400        Succinate dehydrogenase cytochrome component
CT593.1    35.45 **     173           478           496        Chlamydia-specific conserved hypothetical / possible
                                                               frameshift with CT593
CT594      41.70        141           273           306        conserved hypothetical protein (acidic) (possible
                                                               PHP hydrolase)
CT595      42.68         67           220           244        probable thiol:disulfide interchange protein, DsbD-
                                                               related.
CT596      39.51         87           259           370        probable biopolymer transport (tolQ) protein
CT597      40.99        133           393           423        probable biopolymer transfer (tolR) protein
CT598      42.13        146           339           365        Chlamydia-specific hypothetical protein (basic)
CT599      41.69         94           269           363        tolB protein precursor
CT600      40.25        111           336           333        peptidoglycan-associated lipoprotein
CT601      40.17        146           321           376        conserved hypothetical protein (basic) (probable
                                                               invasin repeat phosphatase)
CT602      41.54        158           514 *         525 *      Chlamydia-specific hypothetical protein (acidic)
CT603      42.56         94           355           336        thiol specific antioxidant (tsa) peroxidase
CT604      43.59         90           261           307        60 kD chaperonin (protein cpn60)(GroEL protein)
                                                               (Hsp60)
CT605      42.05         96           266           348        conserved hypothetical protein
CT606      41.63         93           309           359        conserved hypothetical protein
CT606.1    45.99 *      258 ***       513 *         529 *      Chlamydia-specific hypothetical protein
CT607      44.10        116           343           355        Uracil-DNA N-glycosylase
CT608      41.01         61           233           317        ATP dependent DNA helicase
CT609      43.88         53           284           351        RNA polymerase sigma-54 factor (major sigma factor)
CT610      38.53        139           376           383        Chlamydia-specific hypothetical protein
CT611      41.98         90           296           391        conserved hypothetical protein
CT612      41.09        174           370           433        dihydrofolate reductase
CT613      42.44         74           318           311        dihydropterin pyrophosphokinase/dihydropteroate
                                                               synthase
CT614      41.13        161           371           358        probable dihydroneopterin aldolase (DHNA)
CT615      42.62        104           233           223        RNA polymerase sigma factor RpoD [sigma-66]
CT616      42.04         92           270           294        Chlamydia-specific hypothetical protein
CT617      43.20        191 *         483 *         535 *      30S ribosomal protein S20
CT618      45.86 *      158           353           390        hypothetical protein
CT619      39.19        106           186           225        Chlamydia-specific conserved hypothetical protein
                                                               (acidic)
CT620      40.21         71           236           281        Chlamydia-specific conserved hypothetical protein
                                                               (acidic)
CT621      41.15         95           206           217        Chlamydia-specific hypothetical protein
CT622      43.07        134           196           223        conserved hypothetical protein (acidic)
CT623      41.48         91           236           228        Chlamydia-specific hypothetical protein
CT624      40.80         82           224           312        MviN virulence factor
CT625      43.98         40           346           405        endonuclease IV
CT626      40.51        112           405           352        30S ribosomal protein S4
CT627      41.28         99           297           280        conserved hypothetical protein
CT628      41.70        120           271           306        geranylgeranyl pyrophosphate synthase
CT629      39.67        101           288           330        UDP-N-acetylglucosamine pyrophosphorylase
CT630      35.68 **     104           360           396        DNA-binding response regulator; possible signal
                                                               transduction regulatory protein
CT631      35.32 **     136           452           475        hypothetical protein
CT632      41.97         74           257           259        Chlamydia-specific hypothetical protein
CT633      40.53         93           295           357        delta-Aminolevulinic acid dehydratase
CT634      40.50        117           230           240        Na+-translocating NADH-ubiquinone oxidoreductase
                                                               alpha chain
CT635      35.65 **     196 *         412           450        Chlamydia-specific hypothetical protein
CT636      38.65        105           239           214        transcription elongation factor (GreA)
CT637      41.08         68           274           295        aromatic amino acid aminotransferase
CT638      42.22        140           350           356        Chlamydia-specific hypothetical protein
CT638.1    40.10        231 **        521 *         520 *      Chlamydia-specific hypothetical protein / possible
                                                               frameshift with CT638
CT639      40.12        102           176           248        exodeoxyribonuclease V beta chain
CT640      39.58         95           228           303        exodeoxyribonuclease V gamma chain
CT641      39.24        108           221           288        conserved hypothetical protein (basic)(possible
                                                               integral membrane protein)
CT642      39.48        133           354           417        conserved hypothetical protein (basic)
CT643      41.50         64           150           250        DNA topoisomerase I
CT644      45.51 *       73           262           345        conserved hypothetical protein (probable NIFR3-like
                                                               protein)
CT645      38.10 *      205 *         466           465        Chlamydia-specific hypothetical protein
                                                               (basic)(probable membrane protein)
CT646      43.65         68           229           273        Chlamydia-specific hypothetical protein
CT647      46.53 **      70           407           458        Chlamydia-specific hypothetical protein (basic)
CT648      41.51         86           199           271        Chlamydia-specific hypothetical protein
CT649      44.19        151           455           498        5-formyltetrahydrofolate cyclo-ligase (5,10-
                                                               methenyltetrahydrofolate synthetase)
CT650      44.13        114           305           347        RecA protein
CT651      40.84         87           210           291        Chlamydia-specific hypothetical protein
CT652      42.14         49           236           318        exonuclease V alpha subunit protein
CT652.1    42.94        181           694 ***       730 ***    Chlamydia-specific hypothetical protein
CT653      41.14        154           395           451        Probable ABC transporter ATP-binding protein (basic)
CT654      40.53         97           356           455        Chlamydia-specific hypothetical protein
CT655      43.37         99           320           363        2-dehydro-3-deoxyphosphooctonate aldolase
CT656      42.96        214 **        480 *         497        Chlamydia-specific hypothetical protein (basic)
CT657      40.32        136           489 *         486        hypothetical protein
CT658      45.01        102           274           348        ribosomal large subunit pseudouridine synthase D
                                                               (pseudouridylate synthase) (uracil hydrolyase)
CT659      39.32        142           441           439        conserved hypothetical protein (basic)
CT660      43.06         79           296           359        DNA gyrase subunit A (topoisomerase)
CT661      40.11        121           316           363        DNA gyrase subunit B (topoisomerase)
CT662      44.35        119           264           331        glutamyl-tRNA reductase
CT663      45.36 *      190 *         449           520 *      Chlamydia-specific hypothetical protein (acidic)
CT664      42.46         59           223           234        conserved hypothetical protein (acidic)
CT665      41.77        172           485 *         539 *      Chlamydia-specific hypothetical protein (basic)
CT666      39.76        166           424           447        Chlamydia-specific hypothetical protein (acidic)
CT667      40.04        227 **        462           431        Chlamydia-specific hypothetical protein (acidic)
CT668      42.45         92           385           393        Chlamydia-specific hypothetical protein (acidic)
CT669      45.02        103           293           337        flagellar type ATPase (probable beta subunit)
CT670      41.87        142           262           298        Chlamydia-specific hypothetical protein (possible
                                                               ribosome protein)
CT671      42.64        150           307           304        Chlamydia-specific hypothetical protein (acidic)
CT672      40.75        104           232           249        conserved hypothetical protein (acidic)(possible
                                                               FliN flagellar motor switch domain)
CT673      42.99         77           251           291        possible serine/threonine kinase
CT674      42.24         64           216           246        General secretion pathway precursor D protein (YopC
                                                               translocation protein)
CT675      41.67         76           273           320        arginine kinase
CT676      43.35        124           434           483        Chlamydia-specific hypothetical protein
CT677      44.88        148           388           436        ribosome recycling factor
CT678      45.31 *       90           320           363        uridylate kinase
CT679      43.97        135           332           309        elongation factor TS (EF-TS)
CT680      42.08        128           322           302        30S Ribosomal protein S2
CT681      43.51        117           250           236        major outer membrane protein (MOMP)
CT682      42.44         79           223           263        probable penicillin binding protein 2
                                                               (transglycosylase/transpeptidase)
CT683      39.40        180           392           408        O-linked GlcNAc transferase
CT684      42.31         91           261           331        conserved hypothetical protein (possible ABC
                                                               transporter associated protein)
CT685      42.22         86           312           366        ABC transporter ATPAse
CT686      44.05         63           221           298        conserved hypothetical protein (possible ABC
                                                               transporter related membrane protein)
CT687      43.89         90           254           300        NifS-related protein (aminotransferase)
CT688      41.28         94           275           307        Possible involvement in plasmid partitioning
CT689      42.51         87           303           369        oligopeptide transport ATP-binding protein
CT690      41.12         85           300           340        dipeptide transport ATP-binding protein
CT691      41.07        110           278           287        conserved hypothetical protein (acidic)
CT692      44.52        125           215           284        phosphate permease/transporter
CT693      45.41 *       83           302           364        phosphoglycerate kinase
CT694      42.11        126           304           325        hypothetical protein
CT695      44.72         89           281           292        Chlamydia-specific hypothetical protein
CT696      41.11         75           249           318        Chlamydia-specific hypothetical protein
CT697      41.86        115           350           385        endonuclease III
CT698      42.19         79           235           294        thiophene and furan oxidation protein (GTPase)
CT699      42.41        120           278           360        phosphatidylserine decarboxylase
CT700      44.75        171           262           297        conserved hypothetical protein (basic)
CT701      43.48        100           248           293        preprotein translocase subunit A protein
CT702      40.76        180           420           470        Chlamydia-specific hypothetical protein (acidic)
CT703      41.56        103           251           292        THDF/YPHC-related GTPase
CT704      43.25         83           227           303        poly(A) polymerase
CT705      42.08         66           247           304        ATP-dependent ClpX-related protease
CT706      43.02        103           353           406        ATP-dependent ClpP endopeptidase subunit
CT707      39.14        138           200           253        trigger factor -- peptidyl prolyl cis-trans
                                                               isomerase
CT708      40.44         80           172           161        probable helicase
CT709      45.26        100           311           368        Rod shape determining protein MREB/HSP70 sugar
                                                               kinase
CT710      46.13 *       90           288           285        phosphoenolpyruvate carboxykinase
CT711      39.16         79           253           275        Chlamydia-specific conserved hypothetical protein
                                                               (acidic)
CT712      41.45        121           337           348        Chlamydia-specific conserved hypothetical protein
CT713      44.41        115           321           383        outer membrane protein
CT714      46.51 **      76           319           401        glycerol-3-phosphate dehydrogenase
CT715      41.54         68           252           330        UDP-glucose phosphorylase
CT716      36.09 **     112           421           519 *      conserved hypothetical protein (basic)
CT717      44.85        102           304           399        probable flagellar-type ATP synthase (beta subunit)
CT718      41.00        174           385           454        Chlamydia-specific hypothetical protein
CT719      41.82        124           317           405        probable flagellar M-ring protein
CT720      44.36         89           442           506 *      conserved hypothetical nifU-like protein (acidic)
CT721      45.92 *       80           286           350        NIFS-related protein (aminotransferase?)
CT722      43.51         76           386           407        phosphoglycerate mutase
CT723      45.37 *       76           444           473        Conserved hypothetical protein (basic) (possible
                                                               pseudouridylate synthetase)
CT724      41.95        173           411           443        Chlamydia-specific hypothetical protein
CT725      45.11        113           450           480        biotin [acetyl-CoA-carboxylase] ligase (bifunctional
                                                               repressor/synthetase)
CT726      42.39        113           351           406        rod-shape determining protein
CT727      44.92         88           228           299        cation-transporting ATPase
CT728      42.34         67           241           339        Chlamydia-specific hypothetical protein
CT729      42.99         71           308           373        seryl-tRNA synthetase
CT730      45.78 *      102           280           343        riboflavin-specific deaminase
CT731      45.83 *      114           292           360        GTP cyclohydrolase II /3,4-dihydroxy-2-butanone-4-
                                                               phoshate synthase
CT732      45.86 *       60           390           432        riboflavin synthase beta chain
CT733      43.08         69           251           297        Chlamydia-specific hypothetical protein (basic)
CT734      44.19        131           292           274        Chlamydia-specific hypothetical protein
CT735      44.76         89           237           256        D-alanine/glycine permease
CT736      45.78 *      105           309           375        conserved hypothetical protein (acidic)
CT737      45.21        111           409           486        Conserved hypothetical protein (basic)
CT738      42.88        107           337           415        conserved hypothetical protein (possible metal-
                                                               dependent hydrolase)
CT739      41.68         80           275           342        cell division protein (ATPase)
CT740      40.68         97           246           266        Na+-translocating NADH-quinone reductase (possible
                                                               phenolhydroxylase component)
CT741      40.35        139           455           462        conserved hypothetical protein (basic)
CT742      40.08        113           326           371        probable RNA methyltransferase
CT743      36.53 **     372 *****     378           435        Hc1 histone analog
CT744      41.29         74           236           291        Chlamydia-specific hypothetical protein
CT745      44.26         85           259           318        protoporphryninogen oxidase (PPO)
CT746      42.09         74           220           271        oxygen-independent coproporphryninogen III oxidase
CT747      42.46         81           214           301        uroporphyrinogen decarboxylase (UPD)
CT748      41.18         53           164           289        transcription repair coupling factor (TCRF) helicase
CT749      40.80         91           192           286        alanyl-tRNA synthetase
CT750      42.99         73           231           281        transketolase
CT751      44.18         56           362           428        AMP nucleosidase
CT752      42.28        138           321           375        elongation factor P (EF-P)
CT753      44.14        208 **        648 ***       714 ***    Chlamydia-specific hypothetical protein (basic)
CT754      41.26         71           316           415        Icc-related protein
CT755      43.55         86           233           336        60 kD chaperonin (GroEL-related) (Hsp60)
CT756      43.48         81           284           298        N-acetylymuramoylalanyl-D-glutamate-2,6,-
                                                               diaminopimelate-D-alanine-D-alanine ligase
CT757      39.19         99           259           343        phospho-N-acetylmuramoyl pentapeptide transferase
CT758      42.15         76           237           277        N-acetylymuramoyl-L-alanine-D-glutamate ligase
CT759      41.50        119           327           304        conserved hypothetical protein (probable cell wall-
                                                               binding protein) (basic)
CT760      40.35        109           245           258        FTSW family protein (sporulation/cell division)
CT761      40.91        111           267           332        GLCNAC transferase (UDP-N-acetylglucosamine -N-
                                                               acetylmuramyl-(pentapeptide)-pyrophosphoryl-
                                                               undecaprenol N acetylglucosamine transferase)
CT762      39.77         88           206           266        MUR-NAc-L-alanine and D-alanine-D-alanine ligase
                                                               (fusion protein)
CT763      43.41        119           389           379        conserved hypothetical protein (acidic)
CT764      41.17         98           317           378        Chlamydia-specific hypothetical protein
CT765      34.55 **     108           463           472        anti-sigma factor/ sporulation-related protein
CT766      42.18         95           311           383        tRNA isopentenylpyrophosphate transferase (IPP
                                                               transferase)
CT767      44.10         79           274           341        probable biotin synthesis protein (THIM-related)
CT768      42.23        167           262           243        conserved hypothetical protein
CT769      33.61 ***    188 *         484 *         475        conserved hypothetical protein (acidic)(possible
                                                               ybeB protein)
CT770      43.38         91           244           308        beta-ketoacyl-ACP synthase
CT771      37.56 *      146           348           370        conserved hypothetical protein (acidic)(possible
                                                               Mut-family pyrophosphorylase)
CT772      38.44         63           335           371        inorganic pyrophosphatase (PPASE)
CT773      43.55         91           244           282        leucine dehydrogenase (glutamate dehydrogenase?)
CT774      44.25         55           325           358        3'(2'),5'-bisphosphate nucleotidase
CT775      43.21        108           383           422        Chlamydia-specific hypothetical protein
                                                               (basic)(possible snGlycerol-3-P Acyltransferase?)
CT776      42.64         79           261           315        2-acylglycerophosphoethanolamine acyltransferase
CT777      43.15        117           266           300        8-amino-7-oxononanoate synthase
CT778      42.19         53           231           311        primosomal protein N'
CT779      41.19        113           352           434        Chlamydia-specific hypothetical protein
CT780      41.67        115           383           401        protein disulfide isomerase
CT781      40.43         66           202           248        lysyl tRNA synthetase
CT782      40.91         65           222           279        cysteinyl tRNA synthetase
CT783      43.17        108           316           337        conserved hypothetical protein (possible disulphide
                                                               isomerase) (acidic)
CT784      44.44        180           412           487        ribonuclease P protein component
CT785      42.22        176           726 ***       705 ***    50S ribosomal protein L34
CT786      45.93 *      273 ***       912 *****     869 *****  50S ribosomal protein L36
CT787      40.92        224 **        503 *         445        30S ribosomal protein S14
CT788      38.15        134           325           376        Chlamydia-specific hypothetical protein (acidic)
CT789      40.96        189 *         659 ***       686 ***    Chlamydia trachomatis-specific hypothetical protein
                                                               (basic)
CT790      39.43        147           337           330        Chlamydia-specific hypothetical protein (acidic)
CT791      41.42         79           270           346        excinuclease ABC subunit C
CT792      40.98         43           196           280        DNA mismatch repair protein
CT793      41.20        135           558 **        599 **     hypothetical protein (basic)
CT794      40.84         54           291           268        DNA primase
CT794.1    44.56        164           477           457        Chlamydia-specific hypothetical protein
CT795      43.56        130           384           403        Chlamydia-specific hypothetical protein (acidic)
CT796      42.80         52           168           241        glycyl tRNA synthetase
CT797      40.43         86           338           384        phosphatidylglycerophosphate synthase
CT798      40.37        115           282           348        glycogen synthase
CT799      39.46        123           332           306        general stress protein
CT800      41.71         92           388           437        peptidyl-tRNA hydrolase
CT801      39.58        137           397           388        30S ribosomal protein S6
CT802      43.62        142           668 ***       610 **     30S ribsomal protein S18
CT803      44.91        124           406           332        50S ribosomal protein L9
CT804      43.29         86           294           400        conserved hypothetical protein (YchB/YabH family)
CT805      38.07 *       88           264           322        Chlamydia-specific hypothetical protein (basic)
CT806      40.03         67           155           231        Insulinase family/Protease III
CT807      42.50        107           287           333        glycerol-3-phosphate-O-acyltransferase
CT808      40.10        121           197           258        probable cytoplasmic axial filament
                                                               protein/ribonuclease G
CT809      44.01        158           491 *         511 *      Chlamydia-specific hypothetical protein (acidic)
CT810      42.94        317 ****      491 *         429        50S ribosomal protein L32
CT811      44.55        117           243           263        PLSX-related fatty acid/phospholipid biosynthesis
                                                               protein
CT812      42.13         81           200           192        outer membrane protein D
CT813      40.28        142           359           359        conserved hypothetical protein (acidic)
CT814      43.11        140           420           464        Chlamydia-specific hypothetical protein (basic)
CT814.1    41.94        201 *         493 *         540 *      Chlamydia-specific hypothetical protein (basic)
CT815      43.16         84           258           345        phosphoglucomutase or phosphomannomutase
CT816      42.90         71           207           229        glucosamine-fructose-6-phosphate aminotransferase
CT817      41.12        105           239           277        tyrosine/tryptophan-specific transport protein
CT818      40.72        160           298           354        tyrosine/tryptophan specific transport protein
CT819      44.54        142           396           427        conserved hypothetical protein (integral membrane
                                                               protein, possible permease)
CT820      42.84        108           279           332        signal recognition particle
CT821      42.06         69           274           345        succinyl-CoA synthetase beta subunit
CT822      44.67        107           376           372        succinyl CoA synthetase alpha chain
CT823      43.19         70           237           274        periplasmic serine protease
CT824      41.99         73           199           243        probable metalloprotease
CT825      40.28         89           253           283        conserved hypothetical protein
CT826      44.74        115           323           395        CDP-diacylglycerol-serine-O-phosphatidyltransferase
CT827      41.63         84           185           202        ribonucleoside diphosphate reductase alpha chain
CT828      39.11        106           244           221        ribonucleoside diphosphate reductase beta subunit
CT829      39.22        126           300           340        rRNA methylase
CT830      41.24        138           372           391        predicted rRNA methylase
CT831      41.92        124           308           375        UDP-N-acetylmuramate dehydrogenase
CT832      45.83 *      166           346           397        Chlamydia-specific hypothetical protein
CT833      40.76        165           420           425        translation initiation factor 3 (IF-3)
CT834      43.23        227 **        515 *         505 *      50S ribosomal protein L35
CT835      43.36        112           435           384        50S ribosomal protein L20
CT836      43.27         99           278           264        phenylalanyl-tRNA synthetase alpha chain
CT837      36.32 **      62           175           218        conserved hypothetical protein
CT838      39.44         93           308           366        Chlamydia-specific hypothetical protein (basic)
CT839      37.66 *       78           232           313        conserved hypothetical protein (basic)
CT840      38.11        101           255           292        conserved hypothetical protein (possible PP-loop
                                                               ATPase)
CT841      42.35         58           192           179        FtsH-related ATPase protease
CT842      43.12         51           164           215        polynucleotide phosphorylase (PNPase)
CT843      34.52 **     128           394           384        30S ribosomal protein S15
CT844      39.26        121           438           412        cytosine deaminase
CT845      40.94        272 ***       559 **        570 **     Chlamydia-specific hypothetical protein (acidic)
CT846      41.60        101           378           442        Chlamydia-specific hypothetical protein (basic)
CT847      40.89        156           443           494        Chlamydia-specific hypothetical protein
CT848      40.28        172           417           407        Chlamydia-specific hypothetical protein
CT849      41.72        126           438           498        Chlamydia-specific conserved hypothetical protein
                                                               (acidic)
CT849.1    44.09        162           611 **        613 **     Chlamydia-specific hypothetical protein
CT850      41.56        123           282           308        conserved hypothetical protein
CT851      41.47        119           277           288        methionine aminopeptidase
CT852      38.89        143           339           353        membrane protein (YHGN-related)
CT853      44.89        143           337           419        membrane protein (YHGN-related)
CT854      41.88        103           215           265        ABC transporter permease fused to pyrimidine
                                                               biosynthesis enzyme
CT855      40.75         74           309           338        fumarate hydratase class II
CT856      40.74        101           251           313        sulfate transporter
CT857      41.73        106           249           304        Na+/H+ antiporter
CT858      41.65         46           191           227        conserved hypothetical protein
CT859      42.02         70           278           319        penicillin tolerance (LytB) protein
CT860      43.88        110           270           357        Chlamydia-specific hypothetical protein
CT861      42.49         95           280           330        Chlamydia-specific hypothetical protein
CT862      38.89        127           349           392        low calcium response locus H protein
CT863      44.95        125           243           295        Chlamydia-specific conserved hypothetical protein
CT864      40.78         94           344           402        integrase/recombinase (XerD-related)
CT865      40.83        111           293           322        Chlamydia-specific hypothetical protein (basic)
CT866      43.54        115           194           204        1,4-alpha-glucan branching enzyme
CT867      43.56        104           339           380        conserved hypothetical protein (acidic) (possible
                                                               thiol protease)
CT868      46.09 *      106           226           277        conserved hypothetical protein (possible thiol
                                                               protease)
CT869      41.18         99           226           290        outer membrane protein E
CT870      40.81        109           217           283        outer membrane protein F
CT871      42.25         86           192           265        outer membrane protein G
CT872      43.11         83           160           227        outer membrane protein H
CT873      42.54        116           417           439        hypothetical protein
CT874      43.55         76           246           305        outer membrane protein I
CT875      46.76 **     109           235           257        hypothetical protein
pCT01      37.40 *      133           288           281        plasmid factor PGP1-D: DNA helicase
pCT02      34.85 **      72           336           346        plasmid virulence factor pGP2-D
pCT03      37.63 *      131           293           315        plasmid virulence factor PGP3-D.
pCT04      31.37 ****   199 *         443           501        plasmid virulence factor PGP4-D
pCT05      36.63 **      57           351           406        plasmid virulence factor PGP5-D (SOJ related)
pCT06      35.63 **     115           369           426        plasmid virulence factor PGP6-D
pCT07      35.85 **      72           299           340        plasmid virulence factor PGP7-D
pCT08      40.81         73           313           375        plasmid virulence factor pGP8-D


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